atpsckmt (LOC106599314)


Basic Information

Item Value
gene id atpsckmt
gene name LOC106599314
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19359517 ~ 19361133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589402.2
AGTCGGACAAAAAGCTGCAGCACACCTTGGTCCAGAGCGAGGTTTCGATTctaataaagttttttttaaccttttctGACATTCAAATGTCATCTCAGTTTGCTATTTAGTTACGTCCCGCATGTTTAAGTGTACTTCTGTTGGCTAGTCTCGTAATTTCTATATGTTCTTGAATGACGTAACTATCAATAAATGTCCTTGGAtgagtagctagctaacagtgggAGGAGAGGTTTCCAGCAGCTCGCGCTCATTCATTGATTAAAAGTAATCATGGCAGAACAAAGCCTACTGGAAACTGAGGCGATACAATGTAACGTTAATGCTAAAGACACCGGCTTCAAAAAACGTTTAGGACTGATCGCAACTGGAATTGTCGGGGGGTCATTGGTTGCCCTTTACGCTGTTGCAGGTCCATTTGTTGCACCTGCTTTGAGAAAGGTGTGCCTACCTTACGTTCCCGCAACTACAGCACAGGTGGAAAATGTCCTGAAAGTGCTGCAGGCGAGATCTGGATCCCTCGTGGACATCGGAAGTGGGGATGGAAGAATAGTGATAGCAGCTGCAAAGAAAGGATTTCGAGCTGTTGGATTTGAGTTGAATCCATGGTTGGTGTGGTACTCCCGTTACAGAGCTTGGAAAGCGGGTGTTCATCATTCTACTTCCTTCCACATATCAGATTTATGGAAGGTCAGCTTTAATCAGTACTCGAATGTTGTCATATTTGGAGTACCTCAGATGATGGATAAGTTGGAGGGCAAACTGCAGACAGAACTACAGAGCACAGCTAAAGTGGTGGCCTGCCGTttcccttttcccacctgggcaCCTGATGGCACTGCTGGAGAAGGAATAGACACTGTGTGGGTATACGATGCAGAGTCGTTCAAAACAGAAAGAGGAACACATCAGAGACATTTTGTAACTCCACATCAGCCCCTGGGCAATGATGACACTACCACGTCATACTAATTGTGTTCATCCCTGAATGCCTCAGGGATGTGTTGCTTTGAAAATCATTCCCAGGATGTTATCAAATGTGTGAGAGTCAGTAATAAAAAATGGTGATAATTTAAACAAA

Function

NR:

description
protein FAM173B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589402.2 True 1081 mRNA 0.44 4 19359517 19361133

Neighbor

gene id symbol gene type direction distance location
LOC110508682 LOC106599592 coding downstream 17666 19333067 ~ 19341851 (-)
pkia NA coding downstream 103584 19209199 ~ 19255933 (-)
sc61g NA coding downstream 162473 19193808 ~ 19197058 (-)
LOC110508678 LOC105024244 coding downstream 174191 19116082 ~ 19185326 (-)
LOC110508677 LOC106599302 coding downstream 264452 19081538 ~ 19095065 (-)
socs6 socs6 coding upstream 30231 19391364 ~ 19394722 (-)
crispld1b LOC106599318 coding upstream 54571 19415704 ~ 19426343 (-)
tmem70 LOC106599322 coding upstream 108702 19469835 ~ 19472417 (-)
LOC110508691 LOC106599325 coding upstream 123817 19484950 ~ 19488548 (-)
LOC110508692 LOC106599326 coding upstream 129588 19490721 ~ 19517290 (-)
G2113954 NA non-coding downstream 32797 19326072 ~ 19326720 (-)
G2113953 LOC106599307 non-coding downstream 34782 19321641 ~ 19324735 (-)
G2113873 NA non-coding downstream 154117 19205189 ~ 19205400 (-)
G2113872 NA non-coding downstream 154409 19204844 ~ 19205108 (-)
G2113871 NA non-coding downstream 155261 19204057 ~ 19204256 (-)
G2113978 NA non-coding upstream 35580 19396713 ~ 19397180 (-)
G2113982 NA non-coding upstream 42315 19403448 ~ 19403721 (-)
G2113988 NA non-coding upstream 45988 19407121 ~ 19407379 (-)
G2114754 NA non-coding upstream 112734 19473867 ~ 19474185 (-)
G2114757 NA non-coding upstream 114698 19475831 ~ 19476031 (-)
G2113520 LOC106599295 other downstream 349852 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 393038 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 574195 18784897 ~ 18785322 (-)
G2113287 NA other downstream 617233 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1498007 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2509552 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2512083 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2581848 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3233400 22594533 ~ 22607806 (-)

Expression


Co-expression Network