LOC110508691 (LOC106599325)


Basic Information

Item Value
gene id LOC110508691
gene name LOC106599325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19484950 ~ 19488548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589411.2
TGCGCAGTGCCTTGTGCAAGTTGACCCTCGTGAACAAGCATGAGTACTCGCAACAAAGTAGCAACTAGCAATAATTAGCTGCACAATAGGCTATCAAAGTCAATTTTGTTGTCTCATCTTTCCTCGAAATTATCATGATCAGTAAATCTTTCTGAACGCATATTTCTTTTGTTGCTTACCATGAATATCTTTGTTGAATTCTGCTTGGTGTCGTGCAAAGTTCTCTGGACTTTTGTGTTGGCTGGAACGAGATGGCTCGTGCGTCCAAAAGAGAAGAATGTAATGGGTCAGGTTTGTGTGATCACTGGGGCAGGAAGCGGTCTTGGAAGACACTTTGCCAAGGAGTTTGCCCGAAGAGGTGCTACGGTTATTCTTTGGGACATCAATTGGGAAAGTAACGAAGAGACTGCTGAGATGGTGCGACAAATCTACAGCGACTTTACCAATAGGAACCCCGAAGGTTCAGTGGATGGTGAGGAGGGAGATGTATCTCAGATTCAGCCCCAGGTCTACACTTATCTGTGTGATGTAAGCAAGAGAGAGGAGGTGTACTTGACCGCAGATAAGGTGCAACGTGAAGTGGGCAACATTGATATCCTGATCAACAATGCCGGGGTGGTCTCAGGACGTCACCTGCTGGAGTGTCCAGATGAACTCCTAGAGCGCACCATGATGGTCAACTGCCATGCTCACTTTTGGACTACCAAGGCTTTTGTTCCCAAGATGCTCGAGCTGAACCATGGGCACATCGTGACGGTAGCCAGCTCCCTGGGTCTGTTCACCACTGCTGGTGTTGAGGACTACTGTGCCAGCAAGTTTGGTGCTATAGGTTTTCATGAGTCCCTCAGCCACGAGCTGAAAGCTGCTGAGAAAGACGGGATAAAAATGACGCTGGTCTGTCCTTTCTTAGTTGATACTGACATGTTCAAAGGGTGTAAAATCAGGAAAGAGATTGCCCCACTCTTCCCTCCGTTGAAGCCAGAGCAGTGTGTGCAACAGGCAATGAGGGCTATCCTAACAGACCAGCCCATGATCTGTACGCCTCGGATTATGTACATGGTTAGTTTCATGAAGACTGTCTTGCCCTTTGACGCCATCGTTTGCATGTACCAGTTTCTTGGAGCAGACAAATGCATGTACCCGTTCCTGGCTCACCGGAAGGAGTCCATGAACAACAATGAATCCAAGCTGCCTGCCATCATGCAGCTGCCACTGGAGAAAAAATAATGTTACATATACCCTTTGAAACTCAGATTTATCAGATGGAGAGGTTTCCCACATTGTCCCTCTGGAACAAACTACATATGCTGTGTACTTTATTAAGGGTTCACATTGGTTCTTTTGGTTTCTTTAAACcagtttttgtatttgttttaaacATAATAATTGATAGTAAATGCGTAAATGTCATTGTTTTGTAGACACTCACTGTGTATCCCTATCCCGCGCTTTGTTCCATGGTGGCCGGCTTGATCATTCCTCACGCAGTGCCTTATTCTGGTTGCCTTTGAGTCATTAAATTGTTTTTTGTATTTTGCATTGTATAAATGAGTTTTGTGTAGAATGTCTTCATTTAGAAAACAGATTTTGGGGAAAGAGTCCTTTCACTCGAAGTGCCACATGTTTTTGAATGTGGACACTCCCTAGAATGCTGCCCCTGTGTGCATAACTTGTGTGTTAATTTCTGGGGATCCTTCCAGGCTACGACATAGCTGAAAGCAATTTATCTGTTTGGGATACAAAAGAGAAAACAAAAGCTAAGCAATTAACAATGAGATACTCATCTGCAGACATGTGCAGTATGTGACAGCACTGTCACTAACCTGAACAGAATAACTATTTCTATAATTACCATTTCAAGACTTCACAAAACTATAGACAGAGGACTGGATCTACCGTGGCAGTCATTCACCTATTTTtcaagtcttttttttttttcagaactGGAGATGAGACCCTGTATTTGTTATTGTACTATGTCCTAACTGTACATGGAAATATCATGTGCAACTGATTCTGTACTTGGAACTCCAGTGAGATGAACCACTGCAGTTTTCTCATTTGGATTGTCCTAACAAGTCAACAAAAACAACTTGACTGAGGTTGTATTCATCAGAGAAAGCCTAAGGACATGTTGCAGCTCTGAGTATCAGTAGGAAGATTAAGTAACTGGGAACCAATTTTATAAGTGAGCTGTGCAATTGAATCAGATAACCTTTCAATATTAAACAATATAGTTAATCAAATATTGCAGCTTATAAATAGCCTGCATATTTGATGCTGAAGATTGAG

Function

NR:

description
retinol dehydrogenase 10-B-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function

KEGG:

id description
K11151 RDH10; retinol dehydrogenase 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589411.2 True 2292 mRNA 0.43 6 19484950 19488548

Neighbor

gene id symbol gene type direction distance location
tmem70 LOC106599322 coding downstream 12533 19469835 ~ 19472417 (-)
crispld1b LOC106599318 coding downstream 58607 19415704 ~ 19426343 (-)
socs6 socs6 coding downstream 90228 19391364 ~ 19394722 (-)
LOC110508684 LOC106599312 coding downstream 117100 19361060 ~ 19367850 (-)
atpsckmt LOC106599314 coding downstream 123817 19359517 ~ 19361133 (-)
LOC110508692 LOC106599326 coding upstream 2173 19490721 ~ 19517290 (-)
LOC110508693 dnjb6 coding upstream 53364 19541912 ~ 19558555 (-)
LOC110508694 LOC106599332 coding upstream 154425 19642973 ~ 19648077 (-)
LOC110508698 LOC106599334 coding upstream 183783 19672331 ~ 19724429 (-)
LOC118944854 NA coding upstream 267617 19756165 ~ 19787841 (-)
G2114757 NA non-coding downstream 8919 19475831 ~ 19476031 (-)
G2114754 NA non-coding downstream 10765 19473867 ~ 19474185 (-)
G2113988 NA non-coding downstream 77571 19407121 ~ 19407379 (-)
G2113982 NA non-coding downstream 81229 19403448 ~ 19403721 (-)
G2113978 NA non-coding downstream 87770 19396713 ~ 19397180 (-)
G2114741 NA non-coding upstream 1265 19489813 ~ 19490442 (-)
G2114795 NA non-coding upstream 47912 19536460 ~ 19536921 (-)
G2114796 NA non-coding upstream 48416 19536964 ~ 19537636 (-)
G2114788 NA non-coding upstream 51203 19539751 ~ 19540581 (-)
G2114785 LOC106599333 non-coding upstream 141557 19630105 ~ 19637488 (-)
LOC110508678 LOC105024244 other downstream 362894 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 475285 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 518471 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 699628 18784897 ~ 18785322 (-)
G2113287 NA other downstream 742666 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1370592 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2382137 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2384668 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2454433 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3105985 22594533 ~ 22607806 (-)

Expression


Co-expression Network