LOC110508697 (LOC106599330)


Basic Information

Item Value
gene id LOC110508697
gene name LOC106599330
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19657025 ~ 19667196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589419.2
TCCCTGTGCGCCCCTTTTGAATCAAGAATGTTATTCTGTCCCACTCCCCTCATCGTCACATCCTCCGGTCCATGGCGCGCGCACAGTGAGATTTGGCGCTAGTGTTGCCTTGAGATGAACATTTGCAGTGGAATAACTTTTTCATGTCCTTTAACTTGCTAGTTATCTTGTGTTACATATACCGATTAGCATTTTATGGATAGTAATGTCGGGCGAAGAACCGAAGGTCCCAGAAGAGCTCTTCAAAGATGTTAAATTCTACGTGGTCGGAGACATTGACCAAAAGGTTGTCCAGCTCCTAAAAGCGGGGAAAGGAAAAGAGGTCTCATACAATGCCTTGGCTACACACATCATAGCAGAGGATGGGGATAACCCAGAGGTTGGGGAGTCACGAGAAGTCTTTGACCTTCCAGTTGTCAAGCCGTCTTGGGTGACTTTGTCCGTAAGATGTGGAGACCTGCTACCAGTTACAGGATTCTCCCCAGAGTCGGGACAAATATTCTTCGGTGTCACGGCATGTCTGCCAAAGCTACCAGAAGATCTCAACACTCTTTGGGCCTTGGTCACTTTTTATGGCGGTGACTGTCAACTCAAcctaaacaagaaatgcactcacCTGATTGTTCCAGAGCCAAAAGGGGAAAAGTATGAGGTCGCCCTGAAGCACAGCAGCATCAAAATCGTCACGCCGGAGTGGATCACACACTCGGCGTTGGACAAGAGCCGGAAGGACGAGGCTCTGTACCACCCCCGGTTGACCTACCAGGAGgtggaagaggatgaggagagtgAGTATGAGTCGCTCTCGGAGGGCAGCTACAGCCCTCCAGGCCGCAGGCGCCCAGGCCCCAGGTCCCGGAGATCCAGCTCCTCCTCAAGAGACGACTCCCCTGCTAGTGGCCGAGGAGGGACCTCGCCCAAAGCCGAGCGACGAGACGAGCTCATGTTCGATGACTCGGATGACTCTTCCACGGAGAAGGAGGAACGGAACCTGAACTGGACCCCAGTAGAGATTACCGGGCCACCCCCGGGTCCCAAACGCAGACTGCAGCCAGGGAAGGACTCTGGCCTGATCAACCTCTGTGCCAGCGTGCCCCTTGTGCCGGGCAGTGCAGGGCCACCAGACACCCGGGCTGCCCTGGGACCCAGTGGTGCCCAGCTTGGGGCAGAGAGGCCAGAGGGCATGGCAGGCTGGAGCCCAGCGGCCAGGACGCTACGGAACATTACCAACAACTCTGACATCCAGCAGACCACCAGACCCTCCAACGTTGCACATAGTCTCTCTGCCTCAACGAAGacattggagcagcagcagcagcaaacgAACCAGGGCCAGCCCAACACCCAACCCAACCCACTCCTGTTCAACCAAGTGAAGCCCCAAGGTCAGCAGCAGCTCACAGCCGAAGCACAGCAGCAGTTACTGCAGCAGCAGTCTCATCAGGTCCCCCAACAGCCACAACAACACCCACCTCAGCAGCTGCCACAGCAACAGCACCCCATGCTGCAGCATATTCCACCACAGCAACTCATGCAGTTGCACCACCAGCAGCAACAGCAACCGCAGGTTCCTCAGCAAGGTTTCCCTCCTCAGTTGTCACAACAACCGGCCCATCAGTTCATCCAGCAGAAGCAGCCGCACCAACAGCAGATCCACCAACAACAGATCTTCccccagcaacaacaacagcaaccgcCACGTGCATTCTCGCAGCAACAACTGCGACCACAGCAGCTCCCCCGGCCGCCcatacagcagcagcagctccaacaacagcagcagcagcatgctTTACAACAGCAGTTACAGCAGTTCCAGCAGCACAGGCTCCAGTTACAGCTCCAACAGCAGCAGAACCAGCAGCAGCAACTCCATCAACAACACCTCCAACAGCAGCAGCATTTCCTGCAGCAACAGATGCAGCAGCAGCACATGCAGCAGcttcaacagcagcagcagcagcatctccAGAGCCAGCAGCAGTCGCTGCAGCAGCATCCGAGCCAGCAGCAGCAAGGGTCACTACAGCCTCAGCTTCCTCAAGTGCACCAGTTGTTTGGCCACGAGCCAGGCCAAGAGATTCCAGAAGATGGCTTCTTGGTGGGCTGTGTGTTTGCTATCGCTGACTACCCAGAGCAGATGGCAGACAAGCAGCTCCTAGCCACGtggaagagaATTATCCAGGCCTATGGTGGAATTGTGGACTCCTCTCTTAACAACcgctgcactcacctgctctgtgaAACTCAAGTCAGCAGCATGTATGTCCAGGCCCTACGAGAGGGGAGGCGCTGTGTCACTGCCCACTGGCTGAACACCATCCTGAAGAAAAAGAAGATGGTTCCTCCTCACAGAACCCTACACCTCCCCTTCGCCTTCCCACCAGGAGCCAAGCCCTGCTCACAACACATCATCTCCGTAACTGGCTTTGTGGACTCAGAACGCGACGACCTGAAGCTGATGGCCTACCTGGCAGGAGCCAGATACACAGGCTACCTCTGTCGTAGTAACACTGTGCTCATCTGTAAAGAGCCCAGTGGTCTGAAGTATGAGAAGGCCAAGGAGTGGAGGATCCCCTGCGTCAACGCCCAGTGGCTCTGTGACATTCTCCTGGGGAACTTTGAAGTCCTCCGGCAGGTCCAGCACAGCAAATACTCCAACTTCAACCTGCAGGAACCACTCATCCCCAACCAGCATCTGGTTCAGAACCTACTGGGTGCTTGGCGGGCTCCTGTGAAGGTTTCGCCTGACGCATTGGCGGCATTGCAGTTGCAACAAAAGCAGAAACAGTCTGAGTCGAACTCCCAGCATCCAAATAAGAAACCACGACTTGAGGAGATCGAAGCCCCAACCAAGAAGCTTCCACCAGAATCCACACCGTACATTTTCTTCACTGGCTTTGAGCCAACACAGGTCCAACAATTCATGAAGAGGCTGTACAACCTTGGAGGGGAGATCGCAAAGAGTGCTCAAAAGTGCACCCATCTGGTGGCCAACAAGGTGACGAGGACTGTGAAGTTCCTCACGGCGATTTCCATTGTCGAGCACATCGTCACCCCTGAGTGGTTAGAAGAGAGCTGGAAGAGCCAGAAGTTTGTTGATGAGCAGAACTACATGCTAAAAGATGCAGAGGCAGAGGTGCTGTTCGGCTTCAGTCTGGAAGAGTCACTGAAGAGGGCCCACGCTGCACCACTCTTCAAGGGCAAGTATTTCTATATTACCCCTGGGATCTGTCCCAGCCTTACCACTATGAAAGCCATCATAGAGAGCGCAGGAGGCAAGGTGCTCCCCAAGCAGCCCTCCTTCCGCAAAATAATGGAGCACAAGCAGAATAAGAACCTTCCTGAGATCATTCTGATATCCTGTGAGAATGATCTTCATCTATGTAGAGAGTACTTCTTGAAGAACATTGATGTTCACAATGCTGAGTTTATATTGACTGGAGTATTGACACAGAACCTGGATTATGAATCAAATAAATTCACATGATGGCAAAGACCAAGGAGGAGAAGACTAGAAGAAGTCCGGTGAAGATGAGGGTTTTAGTGAAGTGCATTTTTCCATTGACTGAGGTCCTGTACTGGAGGAAACAATGAAGACGACTGAAACAAGTTGCAATGTACAGTCACACTGCTGTACAGTCACACTGCTGTACAgtcacactgctcttgatatttTGCAAGATTTTGTACCCTGTGAATAGATAATCGTTGTTTTGTAGGTTTTTGTAACAATCGCTAATAATGCATACATAAATTGATGTTATTTTTGTGgactgaatgtttaaattatggattggttttaatttttttaaattgtattaagGTTTCTAGCAATTATTCAACACTTTTGGAATAAAATCAGAAGTTTGTTGTCAAAA
>XM_036966423.1
TCCCTGTGCGCCCCTTTTGAATCAAGAATGTTATTCTGTCCCACTCCCCTCATCGTCACATCCTCCGGTCCATGGCGCGCGCACAGTGAGATTTGGCGCTAGTGTTGCCTTGAGATGAACATTTGCAGTGGAATAACTTTTTCATGTCCTTTAACTTGCTAGTTATCTTGTGTTACATATACCGATTAGCATTTTATGGATAGTAATGTCGGGCGAAGAACCGAAGGTCCCAGAAGAGCTCTTCAAAGATGTTAAATTCTACGTGGTCGGAGACATTGACCAAAAGGTTGTCCAGCTCCTAAAAGCGGGGAAAGGAAAAGAGGTCTCATACAATGCCTTGGCTACACACATCATAGCAGAGGATGGGGATAACCCAGAGGTTGGGGAGTCACGAGAAGTCTTTGACCTTCCAGTTGTCAAGCCGTCTTGGGTGACTTTGTCCGTAAGATGTGGAGACCTGCTACCAGTTACAGGATTCTCCCCAGAGTCGGGACAAATATTCTTCGGTGTCACGGCATGTCTGCCAAAGCTACCAGAAGATCTCAACACTCTTTGGGCCTTGGTCACTTTTTATGGCGGTGACTGTCAACTCAAcctaaacaagaaatgcactcacCTGATTGTTCCAGAGCCAAAAGGGGAAAAGTATGAGGTCGCCCTGAAGCACAGCAGCATCAAAATCGTCACGCCGGAGTGGATCACACACTCGGCGTTGGACAAGAGCCGGAAGGACGAGGCTCTGTACCACCCCCGGTTGACCTACCAGGAGgtggaagaggatgaggagagtgAGTATGAGTCGCTCTCGGAGGGCAGCTACAGCCCTCCAGGCCGCAGGCGCCCAGGCCCCAGGTCCCGGAGATCCAGCTCCTCCTCAAGAGACGACTCCCCTGCTAGTGGCCGAGGAGGGACCTCGCCCAAAGCCGAGCGACGAGACGAGCTCATGTTCGATGACTCGGATGACTCTTCCACGGAGAAGGAGGAACGGAACCTGAACTGGACCCCAGTAGAGATTACCGGGCCACCCCCGGGTCCCAAACGCAGACTGCAGCCAGGGAAGGACTCTGGCCTGATCAACCTCTGTGCCAGCGTGCCCCTTGTGCCGGGCAGTGCAGGGCCACCAGACACCCGGGCTGCCCTGGGACCCAGTGGTGCCCAGCTTGGGGCAGAGAGGCCAGAGGGCATGGCAGGCTGGAGCCCAGCGGCCAGGACGCTACGGAACATTACCAACAACTCTGACATCCAGCAGACCACCAGACCCTCCAACGTTGCACATATCCTACAGAGTCTCTCTGCCTCAACGAAGacattggagcagcagcagcagcaaacgAACCAGGGCCAGCCCAACACCCAACCCAACCCACTCCTGTTCAACCAAGTGAAGCCCCAAGGTCAGCAGCAGCTCACAGCCGAAGCACAGCAGCAGTTACTGCAGCAGCAGTCTCATCAGGTCCCCCAACAGCCACAACAACACCCACCTCAGCAGCTGCCACAGCAACAGCACCCCATGCTGCAGCATATTCCACCACAGCAACTCATGCAGTTGCACCACCAGCAGCAACAGCAACCGCAGGTTCCTCAGCAAGGTTTCCCTCCTCAGTTGTCACAACAACCGGCCCATCAGTTCATCCAGCAGAAGCAGCCGCACCAACAGCAGATCCACCAACAACAGATCTTCccccagcaacaacaacagcaaccgcCACGTGCATTCTCGCAGCAACAACTGCGACCACAGCAGCTCCCCCGGCCGCCcatacagcagcagcagctccaacaacagcagcagcagcatgctTTACAACAGCAGTTACAGCAGTTCCAGCAGCACAGGCTCCAGTTACAGCTCCAACAGCAGCAGAACCAGCAGCAGCAACTCCATCAACAACACCTCCAACAGCAGCAGCATTTCCTGCAGCAACAGATGCAGCAGCAGCACATGCAGCAGcttcaacagcagcagcagcagcatctccAGAGCCAGCAGCAGTCGCTGCAGCAGCATCCGAGCCAGCAGCAGCAAGGGTCACTACAGCCTCAGCTTCCTCAAGTGCACCAGTTGTTTGGCCACGAGCCAGGCCAAGAGATTCCAGAAGATGGCTTCTTGGTGGGCTGTGTGTTTGCTATCGCTGACTACCCAGAGCAGATGGCAGACAAGCAGCTCCTAGCCACGtggaagagaATTATCCAGGCCTATGGTGGAATTGTGGACTCCTCTCTTAACAACcgctgcactcacctgctctgtgaAACTCAAGTCAGCAGCATGTATGTCCAGGCCCTACGAGAGGGGAGGCGCTGTGTCACTGCCCACTGGCTGAACACCATCCTGAAGAAAAAGAAGATGGTTCCTCCTCACAGAACCCTACACCTCCCCTTCGCCTTCCCACCAGGAGCCAAGCCCTGCTCACAACACATCATCTCCGTAACTGGCTTTGTGGACTCAGAACGCGACGACCTGAAGCTGATGGCCTACCTGGCAGGAGCCAGATACACAGGCTACCTCTGTCGTAGTAACACTGTGCTCATCTGTAAAGAGCCCAGTGGTCTGAAGTATGAGAAGGCCAAGGAGTGGAGGATCCCCTGCGTCAACGCCCAGTGGCTCTGTGACATTCTCCTGGGGAACTTTGAAGTCCTCCGGCAGGTCCAGCACAGCAAATACTCCAACTTCAACCTGCAGGAACCACTCATCCCCAACCAGCATCTGGTTCAGAACCTACTGGGTGCTTGGCGGGCTCCTGTGAAGGTTTCGCCTGACGCATTGGCGGCATTGCAGTTGCAACAAAAGCAGAAACAGTCTGAGTCGAACTCCCAGCATCCAAATAAGAAACCACGACTTGAGGAGATCGAAGCCCCAACCAAGAAGCTTCCACCAGAATCCACACCGTACATTTTCTTCACTGGCTTTGAGCCAACACAGGTCCAACAATTCATGAAGAGGCTGTACAACCTTGGAGGGGAGATCGCAAAGAGTGCTCAAAAGTGCACCCATCTGGTGGCCAACAAGGTGACGAGGACTGTGAAGTTCCTCACGGCGATTTCCATTGTCGAGCACATCGTCACCCCTGAGTGGTTAGAAGAGAGCTGGAAGAGCCAGAAGTTTGTTGATGAGCAGAACTACATGCTAAAAGATGCAGAGGCAGAGGTGCTGTTCGGCTTCAGTCTGGAAGAGTCACTGAAGAGGGCCCACGCTGCACCACTCTTCAAGGGCAAGTATTTCTATATTACCCCTGGGATCTGTCCCAGCCTTACCACTATGAAAGCCATCATAGAGAGCGCAGGAGGCAAGGTGCTCCCCAAGCAGCCCTCCTTCCGCAAAATAATGGAGCACAAGCAGAATAAGAACCTTCCTGAGATCATTCTGATATCCTGTGAGAATGATCTTCATCTATGTAGAGAGTACTTCTTGAAGAACATTGATGTTCACAATGCTGAGTTTATATTGACTGGAGTATTGACACAGAACCTGGATTATGAATCAAATAAATTCACATGATGGCAAAGACCAAGGAGGAGAAGACTAGAAGAAGTCCGGTGAAGATGAGGGTTTTAGTGAAGTGCATTTTTCCATTGACTGAGGTCCTGTACTGGAGGAAACAATGAAGACGACTGAAACAAGTTGCAATGTACAGTCACACTGCTGTACAGTCACACTGCTGTACAgtcacactgctcttgatatttTGCAAGATTTTGTACCCTGTGAATAGATAATCGTTGTTTTGTAGGTTTTTGTAACAATCGCTAATAATGCATACATAAATTGATGTTATTTTTGTGgactgaatgtttaaattatggattggttttaatttttttaaattgtattaagGTTTCTAGCAATTATTCAACACTTTTGGAATAAAATCAGAAGTTTGTTGTCAAAA

Function

NR:

description
PAX-interacting protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14972 PAXIP1, PTIP; PAX-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589419.2 False 3881 mRNA 0.52 20 19657025 19667196
XM_036966423.1 True 3890 mRNA 0.52 20 19657025 19667196
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508695 LOC106599333 coding upstream 20200 19623468 ~ 19636825 (+)
LOC110508279 LOC106599328 coding upstream 67511 19586093 ~ 19589514 (+)
LOC110508179 LOC106599327 coding upstream 114678 19531043 ~ 19542347 (+)
LOC110508689 LOC106599321 coding upstream 198405 19439625 ~ 19458620 (+)
LOC118944897 NA coding upstream 206115 19450858 ~ 19450910 (+)
LOC110508700 LOC106599341 coding downstream 257685 19924881 ~ 19933094 (+)
LOC110508704 LOC106599349 coding downstream 671027 20338223 ~ 20364502 (+)
LOC110508181 NA coding downstream 733317 20400513 ~ 20413035 (+)
LOC110508707 NA coding downstream 805837 20473033 ~ 20475279 (+)
LOC110508709 LOC106599357 coding downstream 841068 20508264 ~ 20518432 (+)
G2114128 NA non-coding upstream 14473 19641150 ~ 19642552 (+)
G2114076 NA non-coding upstream 110899 19543931 ~ 19546126 (+)
G2114079 NA non-coding upstream 118702 19537886 ~ 19538323 (+)
G2114074 NA non-coding upstream 126012 19530793 ~ 19531013 (+)
G2114039 NA non-coding upstream 183672 19472570 ~ 19473353 (+)
G2114160 LOC106599334 non-coding downstream 20821 19688017 ~ 19713654 (+)
G2114167 NA non-coding downstream 26443 19693639 ~ 19694314 (+)
G2114205 NA non-coding downstream 90643 19757839 ~ 19758134 (+)
G2114206 NA non-coding downstream 92505 19759701 ~ 19759902 (+)
G2114240 NA non-coding downstream 134857 19802053 ~ 19803977 (+)
G2113578 NA other upstream 580607 19076077 ~ 19076418 (+)
G2113059 NA other upstream 988529 18667115 ~ 18668496 (+)
G2112127 NA other upstream 1753101 17903198 ~ 17903924 (+)
G2111491 NA other upstream 1901444 17754937 ~ 17755581 (+)
G2115369 NA other downstream 774537 20441733 ~ 20442169 (+)
LOC110508722 LOC106569260 other downstream 1173374 20840508 ~ 20842019 (+)
G2116347 NA other downstream 1707299 21374495 ~ 21375078 (+)
smg7 smg7 other downstream 3413220 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 other downstream 3435213 23102409 ~ 23103987 (+)

Expression

LOC110508697(LOC106599330) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110508697(LOC106599330) Expression in each Bioproject

Bar chart with 21 bars.
LOC110508697(LOC106599330) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network