LOC118944854


Basic Information

Item Value
gene id LOC118944854
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19756165 ~ 19787841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040232.1
CAACTGGCTAAGAGCATTTCGGGTTAACACGTGCATTTCGGATGGGGGTAAAAGAAAGgcccaccACTCTCCCCCGTCTCATCGATGGACAACCAGCGTACACGGTGAGGCGTctcctggttgactgggagggttatggcctggaggagaggtgctgaGTCCCTGCTAGGGACATCCTGGACCAATGCCTCATCGCTGATTTCTAACACCGGCACCCCGTTCAACCAGCTCATCGAGTTGTTGGATCAACTCCTTCCCCCCTTCAACAACCTGGACGTAGAGAAAGAAATAAGTGATGAATCTATTCAGCGGTTTCCTTCTACTGTTTTGTTAATTTAAATCATGTCATGCATGTCCATGGATATTGAAGAGAACAAATCTTACCACAGGCTGTTTTACTGCTGCTTGACCTTTTAAAATGGCCTCCTGGGGAAGCATAACTCCTCTGTTTTGTTTCTACTTCTCTGCACTCAATTTCTCCTCCGCTTCTTTCAGAAATTAAAACATGGCTACTGAAACAGTTCTGGGAACTCACATTGTTAGCCAGTGGTGTTTTATCAATTTTCAAACTCTATTTAAATAGGGGGTCTTATGTTTTGTGCCATCCCACTAACTCAGGTCTAACAATGGTTACTTTTAAACAAACTAGTGACCATTATAATCAGAACCTaagccagcattgtgaatggcCATGTTAGCTGATTTAGTGCACATGGTCTGGGGCGTGTGAGGGTCAGGTCAACTCAGGTCACTGCTGGACATCCTCTTTTCTTAAGAGGACCTCCATCAAGTAAGAGACCTCAAAGGACAAATTCTGATTCTCAAGACAGATCTGGGTGTCTGTTGTATGAAAATGTCTTAAATGCATCTGTAACATCAATAGCCTAACCATGACACGTTGTTTGTTTGGTAAGaagagaggtggggctggggaAATGTATGCTCATGAAATCATAGATTTATTCTTAGTTATATTATTCAATAATCAATGAATACCCTATCATGAATTGAAATGCCCATTAAACAGCAGGAAATGTTACATATTGTATGTTCCCATAATCTGAGGGAGTAACGcaggtcttcattgtaaaggCTTGAGATGGAGAGCGAGTTGGTTCCTATGTGGAAATGAATGAATAGGGACAGACGAAGACTTGCCATGGTGAGTGGTGGGAATATTAAACAGTACCTGTGTTGTTAGTCTAGTTAAGCCAAGGATGTCAGGATGGGGTTTTGTTTCGTCTCAGTTTGAGAATAAAAGAAAGGATGGCTCATTGTCTTTAGAAAGGGAGAAAATGCATAGGTGTTTATCCGCATCAATAGGATGTAGCCTACAGCCAGTCTCATCAGCTTGGATAAAGCACCAGGCCATAACAAGAATATGTTACCCTATAAATACATACAATTTTCCAGTTTGAtcatcattgttttttttttctttttcttaacAATTTAGGTACcgagaaaatcaaatcaaatcaaatttattta

Function

NR:

description
PREDICTED: chromobox protein homolog 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040232.1 True 1491 mRNA 0.41 3 19756165 19787841

Neighbor

gene id symbol gene type direction distance location
LOC110508698 LOC106599334 coding downstream 31736 19672331 ~ 19724429 (-)
LOC110508694 LOC106599332 coding downstream 108088 19642973 ~ 19648077 (-)
LOC110508693 dnjb6 coding downstream 197610 19541912 ~ 19558555 (-)
LOC110508692 LOC106599326 coding downstream 238875 19490721 ~ 19517290 (-)
LOC110508691 LOC106599325 coding downstream 267617 19484950 ~ 19488548 (-)
LOC110508281 LOC106599594 coding upstream 605 19788446 ~ 19789753 (-)
LOC110508699 LOC106599337 coding upstream 14148 19801989 ~ 19919902 (-)
LOC110508701 LOC106599343 coding upstream 210196 19998037 ~ 20079911 (-)
LOC110508702 LOC106599345 coding upstream 298083 20085924 ~ 20119384 (-)
LOC118944858 NA coding upstream 495210 20283051 ~ 20285132 (-)
G2114910 NA non-coding downstream 10478 19745431 ~ 19745687 (-)
G2114851 LOC106569237 non-coding downstream 97455 19657101 ~ 19658710 (-)
G2114789 NA non-coding downstream 114221 19641491 ~ 19641944 (-)
G2114785 LOC106599333 non-coding downstream 118677 19630105 ~ 19637488 (-)
G2114788 NA non-coding downstream 215584 19539751 ~ 19540581 (-)
G2115032 NA non-coding upstream 161191 19949032 ~ 19951995 (-)
G2115086 NA non-coding upstream 240859 20028700 ~ 20028929 (-)
G2115087 NA non-coding upstream 241357 20029198 ~ 20029491 (-)
G2115095 NA non-coding upstream 252552 20040393 ~ 20040612 (-)
G2115097 NA non-coding upstream 255917 20043758 ~ 20044004 (-)
LOC110508678 LOC105024244 other downstream 634109 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 746500 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 789686 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 970843 18784897 ~ 18785322 (-)
G2113287 NA other downstream 1013881 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1071299 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2082844 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2085375 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2155140 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 2806692 22594533 ~ 22607806 (-)

Expression


Co-expression Network