LOC110508702 (LOC106599345)


Basic Information

Item Value
gene id LOC110508702
gene name LOC106599345
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20085924 ~ 20119384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589430.2
TCTACTAATGCAGGAAACTAGAGGTGGGAGGACGATTCCAGACCAGCATGGGGACCTTAGGGGATCGAGACTCTCTGACACCCACTTCAACTATATTCACAACACACGGAACAGGACCATATCAGAGTGCTGGGCTTGCAGCTTGGCTTGACGCTCTGTGCACTGCTGAGCACTCCTGAACACAATAGTACTACATACAGCTGATACTCAATCTCTAATTTTTCATCTCTCCTCCACACTCATCTGCTGCGAGATAGTgagaagaaagagtgagagagagagagagagaaatagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgttttgaagggCTGTAAGTCTGAATGTGTTCTTTGCTCGCAAGGGAGTTGCATTGCTTTTGCCATCAGACATTTGGATTAATCTGGTTTTAAAGCGCACCAGCCGGAGAGCCTGGGAGAGACAGTCAAGAGATCCTCCACTGCCCAGATTGCCAATGATCACAAGGAACGGTCTCCTGCTGGTCTTTTGGTTTCTCTTGGACAAAGGCTTCCTGGCTCCCCTTCACTCTCCACCCCAAAGCAGGATAGGAAGAGAGCACCACCTGAGGGGCATGGCAGGACTGGGACTGAGGAGACATGGGGCGTCAGGGGTTCAGAGGGTAAAGCGAGGATGGGTGTGGAACCAGTTCTTTGTACTGGAGGAATATATGGGATCTGAACCACAGTACGTTGGAAAGCTTCACACAGACCTGGACAGGGATGACAGTGAGGTGAAGTACACTCTCTCAGGAGAAGGAGCAGGCACCATCTTCACCATAGACCAGACGACGGGCGACATCCATGCCTTGATGGGTTTGGACAGAGAGGAGAAGTCTTACTACACATTACGAGCTCAGGCTATGGACATGCACACAGGCAGGCCTCTGGAGCCTGAGTCTGAATTCATCATAAAAGTTCAAGACATAAATGACAATGAACCAAAGTTTTTAGAGGGTCCATATACAGCCAGTGTCCCAGAGATGTCACCAGGAGGTACTTTTGTTATGCAGGTGACTGCCACCGATACTGACGACCCCACCTATGGGAATAGTGCACGGATCGTGTACAGTATCCTACATGGACAGCCTTACTTTTCAGTCGACTCCAAAACTGGGGTGATAAGGACTGCTTTACCCAACATGGACCGTGAAATGAAGGAGCTGTACCAGGTCCTTATTCAGGCCAAGGATATGGGCGGGCAGCTGGGGGGACTAGCCGGAACAACCACCATCAACGTCACCCTCAGCGACGTCAACGACAACCCCCCCAGGTTTTCAAAAAGTATTCTCCACCTCAGGGTCCCAGAATCATCGTCTGTGGGCTCAGCAGTAGGGAAGGTCAGAGCTCATGACCTGGACTCTGGGAAGAATGCAGAGGTGGAATATTCTATAGTTCCTGGTGATGAAGGCAACATGTTTGACATCACCTACAACGGGCACAGTCAGGAGGGAATCATAGTCCTTAGAAAAcATCTCGACTACGAAAACAAAAGGTCGTACACCTTTAAAGTGGAGGCCTCCAACGCTCACCTGGACCCCCGGTTCCTCCACCTGGGCCCTTTCAAAGACACCACCACAGTCAAGGTCAATGTGCTGGATGTGAACGAACCCCCTGTGTTCACTAAGACCTCTTACACCATAGATGTGTATGAGGATACTCCTGTGGGCACAATTATTGGATCAGTTACTGCACAGGACCTAGACGCAAGCAGCAGTGCAGTTAGGTACTCTATTGAGTGGAAGAGGCCTGTGGACAGCTGCTTTGACATTGATACTGTGGAAGGGACCATCTCCACCAACGAGATGTTGGACAGAGAGAGTAATAGGCAGCACAATATCTCTGTAGTGGCCACTAAAGTTAACAACCCTCTCCTATCCAACAAGGTCACAGTCACAGTCAATGTGCTGGATGTCAACGAGTTCCCTCCGGAGCTTGCCGTTCCCTTTGACACTTTTGTCTGTGAAAATGCAGAAGTAGGCCAGGTAATTCAGACCATCAGTGCTACGGACAAGGATCTTCCTGCTGTTGGACAGAGGTTCTTCTTCAAGTCCCCTAGGGAAATCAGAAACAGGAATTTCACCGTGCGAGACTTTGGAAACAACACGGCGGGGATAGTGACCAAGCGTGTAGGGTTCCAGAGGCGGGTCCAGGAGTACTACGTGATACCTGTGGTGGTGGAGGACAATGGGTATCCAGCCCAGAGCAGCACCGGCACCCTCACTGTccgagtgtgtgcctgtgtgactgAAGGGTCACTCCTGTCCTGCACGGCAGAGGCAGTCTTCCTACCAATGGGCCTCAGCACCTGGGCAGTGATGGCCATTTTACTGTGCATGGTCATACTCCTGGCGATCTTTGCACTCTATGTCGGCCTGAGACGGCAGAAGAAGAGGGAGACGTTGATGTCATCCAAGGAGGACATCCGGGACAACGTGATCCACTACGATGATGAGGGGGGCGGCGAGGAGGACACCCACGCCTTCGACATGGGCACTCTGAGGAACACCAAAGCCATCAAGGAAAAAATGCTCCGCAGGGGCACAGGGTCAGAGGTCACCGCCCAAACTGAGATCAATGAGTCAACCCCCACCACAGAGGGCAGCGCAGACATCATCAGGGACTACATCCACCAGCGTCTCCAGGAGAACCACCTGGGTTTCTCTGCTCCGCCGTATGACTCACTGGTCACGTATGCCTACGAGGGGGATGGGTCGGTGGGCGAGTCGCTAAGCTCCATCGAGTCGTGGATGGCAGACGGAGGAGAAGACTTCAAATACCTCAGCGAGTGGGGGCCACCCTTTAAAACTGTAGCAGGGATattagacaaagacaaaacagatCCTCCCGTGGCGGAAGTGGAGGAGAGCCGAGAGTACTTGTGAGGACAAGACAAGCAGAAAAGACTAATGTCTTACTTTTATGGTAGATTTGTTTTTAAAGACAATGGGAATAAAATCAAGCCTTTCCGTTCAGTTTTAATCATATTTTGTGGTGGCTGTTATTGTTGTTTATTTAGAAGACagaacatttgaaatgttttattaaaatgaACTTGATAACCCTC

Function

NR:

description
cadherin-12-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06804 CDH12; cadherin 12, type 2, N-cadherin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589430.2 True 3096 mRNA 0.50 12 20085924 20119384

Neighbor

gene id symbol gene type direction distance location
LOC110508701 LOC106599343 coding downstream 6013 19998037 ~ 20079911 (-)
LOC110508699 LOC106599337 coding downstream 166022 19801989 ~ 19919902 (-)
LOC110508281 LOC106599594 coding downstream 296171 19788446 ~ 19789753 (-)
LOC118944854 NA coding downstream 298083 19756165 ~ 19787841 (-)
LOC110508698 LOC106599334 coding downstream 361495 19672331 ~ 19724429 (-)
LOC118944858 NA coding upstream 163667 20283051 ~ 20285132 (-)
LOC110508705 LOC106599238 coding upstream 302999 20422383 ~ 20423841 (-)
LOC110508706 LOC106599351 coding upstream 342115 20461499 ~ 20475045 (-)
LOC110508708 LOC106599597 coding upstream 379101 20498485 ~ 20503690 (-)
LOC110508714 tmem68 coding upstream 509969 20629353 ~ 20637091 (-)
G2115097 NA non-coding downstream 41920 20043758 ~ 20044004 (-)
G2115095 NA non-coding downstream 45312 20040393 ~ 20040612 (-)
G2115087 NA non-coding downstream 56433 20029198 ~ 20029491 (-)
G2115086 NA non-coding downstream 56995 20028700 ~ 20028929 (-)
G2115032 NA non-coding downstream 133929 19949032 ~ 19951995 (-)
G2115154 NA non-coding upstream 37074 20156458 ~ 20157339 (-)
G2115310 LOC106599349 non-coding upstream 244343 20363727 ~ 20365966 (-)
G2115312 NA non-coding upstream 248955 20368339 ~ 20368596 (-)
G2115324 NA non-coding upstream 264548 20383932 ~ 20384155 (-)
G2115325 NA non-coding upstream 264820 20384204 ~ 20384456 (-)
LOC110508678 LOC105024244 other downstream 963868 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 1076259 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 1119445 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 1300602 18784897 ~ 18785322 (-)
G2113287 NA other downstream 1343640 18741918 ~ 18742284 (-)
G2115838 NA other upstream 739756 20859140 ~ 20859530 (-)
G2117313 NA other upstream 1751301 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 1753832 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 1823597 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 2475149 22594533 ~ 22607806 (-)

Expression


Co-expression Network