LOC110508704 (LOC106599349)


Basic Information

Item Value
gene id LOC110508704
gene name LOC106599349
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20338223 ~ 20364502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589431.2
gtgagagagagagagagaaagagagtgagagagagagagagagagagagggagagagatagagagagagagagaccactccGTGTTCAGTGTGTCGGTCGCATACAACGGATTCACACACGCACCTTGATTTAACTTTCTGCTACATCAAACCGTGGTTTCTACACAGCCATCAAGGAAGAGGACTATGAGGGTGAAGCCCAGCTCCCTTAAAGGACGTAAACACCAGTGCAGATAGAGGATTGGCGTTCTGTGCAAATACCACAATTCCACCATGAGGACTTGCTTGCTGACCATGATATGGGCGTGCTTGTCCCTTTATGTGAACTCCACATCTATTAGCAGAAAGACTGtgttagagatgggaggagaggaggacagagatggAACAAAGGGAGGGAAGATACTGAAACGTTTCAAACGAGGATGGATGTGGAACCAGTTCTTTCTACAGGAAGAGTACACTGGGAGTGATAAGCAGTACATTGGCAAGCTTCAATCTGACATGGACAAGGGGGATGGAACCCTGAAGTACATTCTAACCGGGGACGGGGCTGGAGACATATTTACTATTGATGAAAACAATGGTGACCTCCATGCCAATAAGAGactggacagagaggagaaggCCTTCTATACCCTCCGAGCCACCGTAGTCAACAAGAACACAGGCCTGAAACTGGAGCCTGAGACAGAGTTCATCGTTAAACTTCACGATATCAATGACAATGAGCCTAAATTCGCAAAAGAACTTTACATTGCCAGTGCACCTGAGAGGTCTAATATAGGTACTTCAGTCACCCAGGTAACAGCCACTGATGCAGATGACAGCATGTACGGGAACAGCGCTAAACTACGATACAGCATCAGCCAGGGGCACCCATACTTCTCTGTGGACCCAAacacagGTATCATCAGGACAGCCCTGGGGCCTGGAGAGATGGACCGGGAGAAGCGGGAGCACTACCAGGTGGTGATTGAGGCCAAGGACATGGCGGGCCAAAGGGGAGGCTTAACTGGAACCACCACAGTCAATATCACCCTGACCGACGTCAACGACAACCCCCCACGCTTCTCTCAGAGTATATATCAGTTCAGTGTTCCAGAGTCTATAAAAACTGGAATCCCAGTTGGGAGAATCAACGCAGTAGATAAAGACCTTGGGAAGAATGCGGAGATGTACTACAGTGTTGTCAGTGGGGATGGTTTGGACATGTTCGATGTCATCACGGACAAAGACTCACAGGAAGGCATCATTACTGTTTTAAAGCCGCTGGACTATGAAAAGACCCGATCCTACACACTGGAGATCCAGGTACAGAACACTCAGACCTTGGACACTCGCTTCCTGGGGTACCTACCCACCAAGGACATGGCCACAGTCAGGATCGGCATAGAAGATGTGGACGAGCCTCCTCTGTTTGAGAAAGCCAGCTACATGATGGAGGTGAAGGAGGATGCAGCCGTGGGTACTGCAGTAGGGTCTGTCAGGGCTATGGACCCAGATGGATACAACAGTCCAGTCAGGTACTCCATTGATCGTCGTACTGATCTAGACAGGCTTTTCAACGTGCATTCTGGGAATGGGTCCATATTTATCATAAGACCTCTTGACCGAGAAGAAGCTGCCTGGCACAACATTTCTGTTATCGCAACAGAGTTCAacaaacctcTGCAGACCAGTTGGGTGCCAGTCTATGTCCGTCTTCTAGATGTCAACGACAACGCACCCAAGTTCGCCTCTTTCTACGAGACATTTGTTTGTGAAAAGACTAAGGCTGGACAGAAGATCCAGACGGTGAGTGCTGTGGATGCAGATGACCCGGTGGGTGGACACAAGTTCTTTTTCAGTCTGGCTATGGAGGGGGCTTACAGAGGCAACTTCACAGTCAAAGACAATGGCGATAACACAGCTGGCGTCCTAACCCGGCGCTCCAGCTACAGCCAACTGCACAAGAGCATCTACCTGGTTCCTGTGGTGATCACGGACGGGGACTTCCCCATGCAGAGCAGCACGGGGACGCTGACGGTGCGCGTGTGCACCTGCGACCGCGAAGGCAACATGGAGCTGTGCAACGCCGAGGCCCAGACCAGCTCTGCTGGACTTAGCACCGGGGCCCTGGTGGCTATCCTGCTGTGTGtcatcatcctcctcaTGATCATAGTGCTGTTTGCTGCTCTGAAGAGGCAGAAGAAGAAGGAGCCTCTGATCATCTCTAAAGAGGACGTGCGAGACAACGTGGTCAGCTACAATGACGAGGGGGGCGGAGAGGAGGACACCCAGGCTTTCGACATCGGGGCTCTGCGTAACCCCGAGGCCATCGAGGAGAGCAAGCAGAGGCGGGACATCATCCCTTCGGGCACTCTGTACCCCCCTATCAGACGGACAGCCATCCCGTCGCGGGACAACGCAGACGTCCGGGACTTCATAAACCAGCGGGTGCAGGATAACGACAGTAACCCCACCGCCCCCCCTTATGACTCTCTGGCCACATATGCCTACGAGGGAACCAGCTCAGTGGCTGAGTCTCTGAGCTCCTTGGAGTCAGCATCCTCTGAGGGGGACCAGGACTACAACTACCTCAGTGACTGGGGGCCCCGCTTCAGGAAACTGGCTGACATGTACGGGGCTGAGGACAGCGACCGTGAATCCTAACACACCACCTGAACTGTTTGTGGGTGGGAGCTAGGAGGATGACTTATGACTGACTGTAATCTGTCTTCTCAGAAAAGAAGATACATGTTGCAGCCCAAGTTTTTTTACAAAGTGCCCTTTTATTCCTTCCAACTCAGTAGGCCATAGTTCCTTCTGACGGCCAGAACAGACAGAGACTGTGCAGCTGTGTGGATTTGTTTTACTGCAAGGCCGACCTTTGAAGAGAGGATGAACTTCAGTCCCCCAGTTGAAGTTAAGAGCCGGAGTTCAGtgtcaaaaaaaaaaa

Function

NR:

description
cadherin-6-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06798 CDH6; cadherin 6, type 2, K-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589431.2 True 2941 mRNA 0.52 12 20338223 20364502
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508700 LOC106599341 coding upstream 405129 19924881 ~ 19933094 (+)
LOC110508697 LOC106599330 coding upstream 671027 19657025 ~ 19667196 (+)
LOC110508695 LOC106599333 coding upstream 701398 19623468 ~ 19636825 (+)
LOC110508279 LOC106599328 coding upstream 748709 19586093 ~ 19589514 (+)
LOC110508179 LOC106599327 coding upstream 795876 19531043 ~ 19542347 (+)
LOC110508181 NA coding downstream 36011 20400513 ~ 20413035 (+)
LOC110508707 NA coding downstream 108531 20473033 ~ 20475279 (+)
LOC110508709 LOC106599357 coding downstream 143762 20508264 ~ 20518432 (+)
LOC110508710 xkr4 coding downstream 169283 20533785 ~ 20621097 (+)
LOC110508711 NA coding downstream 256673 20621175 ~ 20625876 (+)
G2114427 NA non-coding upstream 197147 20054350 ~ 20141076 (+)
G2114426 NA non-coding upstream 198898 20052636 ~ 20139325 (+)
G2114415 LOC106599343 non-coding upstream 296679 20041018 ~ 20041544 (+)
G2114411 NA non-coding upstream 300921 20037014 ~ 20037302 (+)
G2114407 NA non-coding upstream 304831 20033123 ~ 20033392 (+)
G2114686 NA non-coding downstream 52881 20417383 ~ 20417583 (+)
G2114689 NA non-coding downstream 56890 20421392 ~ 20421640 (+)
G2114690 NA non-coding downstream 57525 20422027 ~ 20422228 (+)
G2114693 NA non-coding downstream 61884 20426386 ~ 20426648 (+)
G2114698 NA non-coding downstream 66846 20431348 ~ 20431581 (+)
G2113578 NA other upstream 1261805 19076077 ~ 19076418 (+)
G2113059 NA other upstream 1669727 18667115 ~ 18668496 (+)
G2112127 NA other upstream 2434299 17903198 ~ 17903924 (+)
G2111491 NA other upstream 2582642 17754937 ~ 17755581 (+)
G2115369 NA other downstream 77231 20441733 ~ 20442169 (+)
LOC110508722 LOC106569260 other downstream 476068 20840508 ~ 20842019 (+)
G2116347 NA other downstream 1009993 21374495 ~ 21375078 (+)
smg7 smg7 other downstream 2715914 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 other downstream 2737907 23102409 ~ 23103987 (+)

Expression

LOC110508704(LOC106599349) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110508704(LOC106599349) Expression in each Bioproject

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LOC110508704(LOC106599349) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network