LOC110508716 (dcup)


Basic Information

Item Value
gene id LOC110508716
gene name dcup
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20674599 ~ 20681885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589460.2
GCTGGCCGCGCCCTGTAGGGGGCTCGCACAACATTCTGGATGACAGTCAAGGAAGAACCAGGCAGCAGTGTGCCACTGACGTATAGGACAAGTGAACAGCATCTCTGAACTTATTCTTCCATTATAACATCAGCCCCATCATGGACAAGGACGAtttaatactCCCTAAAGACTTCCCCAAGTTGAAGAATGATGCATTCCTTCTTGCATGCCGTGGCCAAGAAACCCCTCATGTGCCTGTGTGGTGTATGAGACAGGCTGGACGTTACCTACCAGAGTTCCGTGAGTCCAGAGCGGGAAAGGACTTCTTTGCAACATGTCGATCACCTGCAGCCTGCTGTGAACTCACTCTCCAGCCATTGAGACGTTTCCCATTTGATGCTGCCATCATCTTCTCAGACATCCTGGTTATCCCACAGGCCATGGGTATGGATGTCCAGATGGTGGCAGGAAAGGGCCCTACTTTCCCAGAGCCCTTAAAGGAGCCAGAGGACCTGCTGCTCCTGCAGTCCAAGGTGGATGTCAACAAGGAGCTGGATTACGTCTTCAAGGCCATTACACTGACGCGCCACAAACTGGAAGGCAAGGTCCCTCTCATCGGCTTCACTGGTGCCCCGTGGACCCTGATGGCCTATATGATTGAGGGGGGAGGCTCAACAACCCAATCTAAGGCTAAGCGCTGGCTGTACCGTCACCCTGAAGCCAGCCACCAGCTGTTAAAGATGCTGACTGACATCATAGTGGAGTACCTGCTGGGACAGGTGGCTGCTGGAGCACAGGCCTTGCAGGTGTTTGAGTCCCATGCTGGCTGTCTGGGCCCAGCGGAGTTCCAGGAGTTCTCCCTGCCCTACCTCCGAGACATCGCCCGTAAGGTCAAGGACCAACTGAAGGAGTCAGGCCAGGATGTCCCCATGATTGTGTTTGCCAAGGACGGCCACTATGGTCTGGAGGACCTCTCTCAGTCCCACTATGAGGTTGTTGGTTTGGATTGGACCATCGACCCTCGCTCAGCGCGGGAGCGAACTGGAGGAAAGGTTAGCCTCCAGGGGAACATGGACCCCTGTGCGCTATATGCCCCCAAAGAGCGTATATATGAGATAGTGAAAAAGATGCTGGAAGGCTTTGGCACCAGAGGGTACATTGCCAACCTGGGCCACGGGCTGTACCCTGACATGGACCCGGAGAACGTGGGTGCCTTCGTAGAAGCTGTCCACGCTCACTCTCGCCACCTCCTCAACCTCAAGTAACACCCCCGTCACCTGGCAACATTGACCGCAATCATCAAACTAGCAGCGAAGCAGCACCCAAAAACCAAAGCAACATTGGCTTGGATTGTAGAGACTATATCATGTATTCACAGTAATCCGATAAACCACCAGGTCTTATCAAGTATGGAATCCCAGGACAGATCAAGACAGATCTGGTCCAATTCTGGATGTTTTTCTCTTTCTGAAGAGAATACTACATGATGTTCTATAGATAATCCTAAAACAAACTAAACACATTGCCACAGCGCAATACCTTGTAATATTTCATATTATTCATGTGTACCACTGATCTGTTTTATTCAGATGTAGTGCACCTAAAATTGAAGAAACAAGTGTACCTTATCAAAACAACAGTAGTGAAGGAGATTCAATGTGATAGCCTCAGTCCAATTGTTGTTGTTTAGACTGTTGTACTGCAATTATGACTGTGACTGATGTACTAAAGCCTAAGCATTAGTGTGTGTATATTTTGCTCTTGGTTTTTTATtcagtcaaataaaaataaaaatatattttaattggaCCTGTATTTCAAATGAATCAAATAAATTATATTGGATTTCTA
>TU2419118
cagagcttgagcggatctgcagagaagaatgagagaaacccaaatacagGAGCGTATATATGAGATAGTGAAAAAGATGCTGGAAGGCTTTGGCACCAGAGGGTACATTGCCAACCTGGGCCACGGGCTGTACCCTGACATGGACCCGGAGAACGTGGGTGCCTTCGTAGAAGCTGTCCACGCTCACTCTCGCCACCTCCTCAACCTCAAGTAACACCCCCGTCACCTGGCAACATTGACCGCAATCATCAAACTAGCAGCGAAGCAGCACCCAAAAACCAAAGCAACATTGGCTTGGATTGTAGAGACTATATCATGTATTCACAGTAATCCGATAAACCACCAGGTCTTATCAAGTATGGAATCCCAGGACAGATCAAGACAGATCTGGTCCAATTCTGGATGTTTTTCTCTTTCTGAAGAGAATACTACATGATGTTCTATAGATAATCCTAAAACAAACTAAACACATTGCCACAGCGCAATACCTTGTAATATTTCATATTATTCATGTGTACCACTGATCTGTTTTATTCAGATGTAGTGCACCTAAAATTGAAGAAACAAGTGTACCTTATCAAAACAACAGTAGTGAAGGAGATTCAATGTGATAGCCTCAGTCCAATTGTTGTTGTTTAGACTGTTGTACTGCAATTATGACTGTGACTGATGTACTAAAGCCTAAGCATTAGTGTGTGTATATTTTGCTCTTGGTTTTTTATtcagtcaaataaaaataaaaatatattttaattggaC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0004853 uroporphyrinogen decarboxylase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589460.2 False 1833 mRNA 0.48 10 20674599 20681885
TU2419118 True 759 lncRNA 0.41 2 20680742 20681844
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508715 lyn coding upstream 5626 20654663 ~ 20668973 (+)
tgs1 tgs1 coding upstream 22865 20637091 ~ 20651734 (+)
LOC110508711 NA coding upstream 48723 20621175 ~ 20625876 (+)
LOC110508710 xkr4 coding upstream 53502 20533785 ~ 20621097 (+)
LOC110508709 LOC106599357 coding upstream 156167 20508264 ~ 20518432 (+)
LOC110508718 LOC106599369 coding downstream 126765 20808650 ~ 20813055 (+)
LOC110508722 LOC106569260 coding downstream 158623 20840508 ~ 20842019 (+)
LOC110508723 LOC106599374 coding downstream 279279 20961164 ~ 21152939 (+)
LOC110508725 klf4 coding downstream 555279 21204573 ~ 21239672 (+)
LOC110508726 LOC106599379 coding downstream 579238 21261123 ~ 21348624 (+)
G2115513 NA non-coding upstream 9585 20664232 ~ 20665014 (+)
G2115408 NA non-coding upstream 195792 20478561 ~ 20478807 (+)
G2114702 NA non-coding upstream 239677 20434594 ~ 20434922 (+)
G2114701 NA non-coding upstream 240332 20434064 ~ 20434267 (+)
G2115529 NA non-coding downstream 15298 20697183 ~ 20699375 (+)
G2115703 NA non-coding downstream 67228 20749113 ~ 20795656 (+)
G2115730 NA non-coding downstream 104753 20786638 ~ 20793347 (+)
G2115748 NA non-coding downstream 139692 20821577 ~ 20822238 (+)
G2115857 NA non-coding downstream 196470 20878355 ~ 20878591 (+)
G2115369 NA other upstream 232430 20441733 ~ 20442169 (+)
LOC110508695 LOC106599333 other upstream 1037846 19623468 ~ 19636825 (+)
G2113578 NA other upstream 1598181 19076077 ~ 19076418 (+)
G2113059 NA other upstream 2006103 18667115 ~ 18668496 (+)
G2112127 NA other upstream 2770675 17903198 ~ 17903924 (+)
G2116347 NA other downstream 692610 21374495 ~ 21375078 (+)
smg7 smg7 other downstream 2398531 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 other downstream 2420524 23102409 ~ 23103987 (+)
G2118574 NA other downstream 2481981 23163866 ~ 23164323 (+)

Expression

LOC110508716(dcup) Expression in all Baseline Samples

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LOC110508716(dcup) Expression in each Bioproject

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LOC110508716(dcup) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network