LOC110508722 (LOC106569260)


Basic Information

Item Value
gene id LOC110508722
gene name LOC106569260
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20840508 ~ 20842019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508722
TTTCGGGAAGGAAACACGAACCAATGAACGGACTGCAACCCGTTGACTTACGTAGCGATTGGCGGCGAGTAAACCTGTCAACACGTTAAATTCCAGCTAACACTTGTGCCAAATGAATCGTATAGCAAAACTGAAAGAGAGGTTGTAACCGGCTATAAAATGGCAAATGATGGCGTGGACTACACCATTGTGTTTCCAGATGCATTGGTCTCGGATGGACACTGGCATGGAACAAAATAACCAGTTGTCATACTGCTGGGATGGGCTGGATGCAGAGACGAACATCTTGCCAAGTACAGGGTTGTGTCACTATTTGCTACACACTGAAGACAGTATTCTTCTCTGAATCTTTTGGCTACAAGGAGCTGAGTAACACTGCCCTCAAACTGCTTGAGATACTCTATGATTACGAGGTGGAAAACAGTCCCATATTTTTCCATGTGTTCGGCACCGGGGGATTCATGCTTTACCGCTACATTGTTGAGCTCTTGCACAGTCATAAACAGTTCAGCACCCTCTGTATAGTTGGAGCTGTGGTGGACAGTGCCCCAGGCACTTGAAATGTGAGGGGGGCATTACAGGCTTTTACAGCCACTCTGTGACCCAAACTCAATGTGATGTTGATGTATGTTCTCTTGGCACTGTTTTCTGTAACAGTTTTCCTGCCTAGGGTGGTTCTATACCCTGTGACCAAGTACATCCACAAGAACCACTACGATGCCACCCGGGAGAGCCCTCCTACCTGGCCACAGCTGTACCTGTACTCCAGAGCTGATCGAGTGATTCGGTACAGTGACGTTGACCTCATGGTCAAAACCCCTGCCCATGTGAGCCACTTCCGTGACTTTCCAGAGGAGTACTCCAAGCGATGCCTGGCTTTCCTGACCAACTGCATGAAGGATTCAGAAGGGACCCACCAAAAAAGTGATACTTGATCCAGCATTGAAAGCACACTACTGTAACATTTCTCATAAGTCTATGGCACTTCTGTTTTTGTGATTATACTGTAATGTTACacatgtacactactgttcaaaagtttggggtcacgtagaaatgtccttgtttttgaaagaaaatacatttttgggggggccattaaaataacataaaattgatctgaaa
>TU2419398
CGGCGAGTAAACCTGTCAACACGTTAAATTCCAGCTAACACTTGTGCCAAATGAATCGTATAGCAAAACTGAAAGAGAGGTTGTAACCGGCTATAAAATGGCAAATGATGGCGTGGACTACACCATTGTGTTTCCAGATGCATTGGTCTCGGATGGACACTGGCATGGAACAAAATAACCAGTTGTCATACTGCTGGGATGGGCTGGATGCAGAGACGAACATCTTGCCAAGTACAGGGTTGTGTCACTATTTGCTACACACTGAAGACAGTATTCTTCTCTGAATCTTTTGGCTACAAGGAGCTGAGTAACACTGCCCTCAAACTGCTTGAGATACTCTATGATTACGAGGTGGAAAACAGTCCCATATTTTTCCATGTGTTCGGCACCGGGGGATTCATGCTTTACCGCTACATTGTTGAGCTCTTGCACAGTCATAAACAGTTCAGCACCCTCTGTATAGTTGGAGCTGTGGTGGACAGTGCCCCAGGCACTTGAAATGTGAGGGGGGCATTACAGGCTTTTACAGCCACTCTGTGACCCAAACTCAATGTGATGTTGATGTATGTTCTCTTGGCACTGTTTTCTGTAACAGTTTTCCTGCCTAGGGTGGTTCTATACCCTGTGACCAAGTACATCCACAAGAACCACTACGATGCCACCCGGGAGAGCCCTCCTACCTGGCCACAGCTGTACCTGTACTCCAGAGCTGATCGAGTGATTCGGTACAGTGACGTTGACCTCATGGTCAAAACCCCTGCCCATGTGAGCCACTTCCGTGACTTTCCAGAGGAGTACTCCAAGCGATGCCTGGCTTTCCTGACCAACTGCATGAAGGATTCAGAAGGGACCCACCAAAAAAGTGATACTTGATCCAGCATTGAAAGCACACTACTGTAACATTTCTCATAAGTCTATGGCACTTCTGTTTTTGTGATTATACTGTAATGTTACacatgtacactactgttcaaaagtttggggtcacgtagaaatgtccttgtttttgaaagaaaatacatttttgggggggccattaaaataaca

Function

NR:

description
PREDICTED: transmembrane protein 53-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508722 False 1125 mRNA 0.46 3 20840508 20842019
TU2419398 True 1047 TUCP 0.46 3 20840570 20842003

Neighbor

gene id symbol gene type direction distance location
LOC110508718 LOC106599369 coding upstream 27453 20808650 ~ 20813055 (+)
LOC110508716 dcup coding upstream 158623 20674599 ~ 20681885 (+)
LOC110508715 lyn coding upstream 171535 20654663 ~ 20668973 (+)
tgs1 tgs1 coding upstream 188774 20637091 ~ 20651734 (+)
LOC110508711 NA coding upstream 214632 20621175 ~ 20625876 (+)
LOC110508723 LOC106599374 coding downstream 119145 20961164 ~ 21152939 (+)
LOC110508725 klf4 coding downstream 395145 21204573 ~ 21239672 (+)
LOC110508726 LOC106599379 coding downstream 419104 21261123 ~ 21348624 (+)
LOC110508728 LOC106599384 coding downstream 526109 21368128 ~ 21373297 (+)
LOC110508183 LOC106599611 coding downstream 729891 21571910 ~ 21579065 (+)
G2115748 NA non-coding upstream 18270 20821577 ~ 20822238 (+)
G2115703 NA non-coding upstream 44852 20749113 ~ 20795656 (+)
G2115730 NA non-coding upstream 47161 20786638 ~ 20793347 (+)
G2115529 NA non-coding upstream 141133 20697183 ~ 20699375 (+)
G2115857 NA non-coding downstream 36336 20878355 ~ 20878591 (+)
G2115875 NA non-coding downstream 57598 20899617 ~ 20899817 (+)
G2115881 NA non-coding downstream 63927 20905946 ~ 20906145 (+)
G2115993 NA non-coding downstream 229243 21071262 ~ 21071924 (+)
G2115995 NA non-coding downstream 231845 21073864 ~ 21074314 (+)
G2115369 NA other upstream 398339 20441733 ~ 20442169 (+)
LOC110508695 LOC106599333 other upstream 1203755 19623468 ~ 19636825 (+)
G2113578 NA other upstream 1764090 19076077 ~ 19076418 (+)
G2113059 NA other upstream 2172012 18667115 ~ 18668496 (+)
G2112127 NA other upstream 2936584 17903198 ~ 17903924 (+)
G2116347 NA other downstream 532476 21374495 ~ 21375078 (+)
smg7 smg7 other downstream 2238397 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 other downstream 2260390 23102409 ~ 23103987 (+)
G2118574 NA other downstream 2321847 23163866 ~ 23164323 (+)
LOC110508774 LOC106599485 other downstream 3259138 24101070 ~ 24137027 (+)

Expression


Co-expression Network