LOC110508727 (LOC106599380)


Basic Information

Item Value
gene id LOC110508727
gene name LOC106599380
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21351652 ~ 21368101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040291.1
ATAACCTCCTACTCACTATAGTCAAAATTATGAGAAGGGGTTTTCCCCTATATAAATAACTATGGCTACGGATATTCGTTAGCTAGACACAATATTTTAACTGCCTTTGAGATAAGATTAACTAACATTGCTCTCTTTTTGTTATCGTTCCTTTGTATGAAATAAGATATTAATGTGTGGTTATTATAGACAATACATCTGGTTTGACTTTGTATTCAACCGGGTTAATGCACTAATAATAGTACAACAATAAAACTGTAGACTATAATATGAAGCTGAAATAATGTTCCCATGGATTTTCCAGGCGACAAAATTAAACTATTCAACATTTTATTTACACCAGAAATAGTTTATTCTAagcagagatggagggatacTGATCTCGCGATATGTCTTCATTGGATACAATAATGTTTACACTGGATACAGGAAGCAACAACGAGTTAGACCGTTTAAACTCCTAGGTGTCTTCATGGAAGAATCCGAATGTCCACTCTCGGTGTGGAATGTTATCGTGGAGCAAGTCCCGGCGCCAGAGCTCCCAGACATCCGGGGCTTGTTTGGAGATGCTTTGATTGACATGTACACAGAGATTCATACTGAGGTCACTATGTGGCAGCAGATTTGGCAGACGGTGCGCCATAAACTGGGTAACAGGCTGAAGACACCTCACTCCCCCCTGGCTGACCCCCTGCCATCAAGGAGCTGCTGAAAGCTGAGATCCAACTGCTGCTGGCGACCGTGAGGGAGAGAGCAGCCTTGGAGGGCAGATCAGTTCTGACTGAAGAATGCGAGGTGCTGAAAAGCCAAGTGGACTTTCTGCAGGAGAGTGTAGAACAGGAACACCGGACATGGTGTGATGTCACTGAGGCTCCAGAGCCAACTGTAACAGAgctgaaggaagagaggagagccaTCCAGTTGGATCTGAAGAAGCAGAGCTGAAAAAAACTGATGTTTTGGTGGTGTCGGAGGTAACTGCGTTGGGAGTCGTCAAATTGGTGAGCAGCTCCTCTTGCAGTCATTGTCTTGAAGCCACACCCTTCCCACTCGCGTTAAAAGTTTAGAATGAGAAagtgtagtctatatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactccatttttcacaattcctgacatttaatcctcgtaaaaattccctaccttaggtca
>TU2420373
CGTCAAATTGGTGAGCAGCTCCTCTTGCAGTCATTGTCTTGAAGCCACACCCTTCCCACTCGCGTTAAAAGTTTAGAATGAGAAagtgtagtctatatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactccatttttcacaattcctgacatttaatcctcgtaaaaattccctaccttaggtcagttaggatcaccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040291.1 False 1195 mRNA 0.43 6 21351666 21368101
TU2420373 True 218 lncRNA 0.40 1 21351652 21351869

Neighbor

gene id symbol gene type direction distance location
LOC110508720 LOC106599373 coding downstream 511472 20815693 ~ 20840194 (-)
LOC110508719 LOC106599371 coding downstream 543093 20803211 ~ 20809150 (-)
LOC118936610 NA coding downstream 551979 20792140 ~ 20799687 (-)
LOC110508717 LOC106569256 coding downstream 621010 20685926 ~ 20730656 (-)
LOC110508714 tmem68 coding downstream 714575 20629353 ~ 20637091 (-)
LOC110508729 LOC106599387 coding upstream 8597 21376698 ~ 21521909 (-)
LOC110508730 vato coding upstream 154758 21522859 ~ 21531316 (-)
LOC110508732 NA coding upstream 177139 21545240 ~ 21547961 (-)
LOC110508734 LOC106599390 coding upstream 297307 21665408 ~ 21700959 (-)
eif2b3 ei2bg coding upstream 339281 21707382 ~ 21785903 (-)
G2116648 LOC106599380 non-coding downstream 1861 21349402 ~ 21349805 (-)
G2116646 NA non-coding downstream 3042 21347615 ~ 21348624 (-)
G2116617 NA non-coding downstream 55784 21295475 ~ 21295882 (-)
G2116616 NA non-coding downstream 61506 21289736 ~ 21290160 (-)
G2116615 NA non-coding downstream 61986 21289101 ~ 21289680 (-)
G2116739 NA non-coding upstream 99295 21467396 ~ 21485315 (-)
G2116760 NA non-coding upstream 121824 21489925 ~ 21507634 (-)
G2116818 NA non-coding upstream 214253 21582354 ~ 21616449 (-)
G2116849 LOC106599389 non-coding upstream 262765 21630866 ~ 21640332 (-)
G2115838 NA other downstream 492136 20859140 ~ 20859530 (-)
LOC110508678 LOC105024244 other downstream 2229610 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 2342001 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 2385187 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 2566344 18784897 ~ 18785322 (-)
G2117313 NA other upstream 502584 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 505115 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 574880 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 1226432 22594533 ~ 22607806 (-)
LOC110508185 LOC106569033 other upstream 1956900 23317575 ~ 23353162 (-)
G2116668 NA non-coding upstream 5621 21357490 ~ 21357771 (-)
G2116669 NA non-coding upstream 8200 21360069 ~ 21360276 (-)

Expression


Co-expression Network