LOC110508729 (LOC106599387)


Basic Information

Item Value
gene id LOC110508729
gene name LOC106599387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21376698 ~ 21521909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589482.2
gagcggccAGTCGaccatcttgtcaatataatgATAATCTTCGGCGAGAGAAAACTGCTATAGACTCCTTTTTTGTCTTCATAGCCACATTAAAACGTAACGGACTGTCGGAATTAGGAAGGTAGAAGATTTACTACCCTATATTTGCCCTCCGTAAATAATCAAACAATGAGGCATTCAGATCTCCCATGTCTGTTATATGGCAAAACGTTTTGATCAATGTGTCTGCACGAAAAATGAAATGACCGATTTATATAATCAGAAATAAATGAAACGCACTCCAGGCTTTATTAAGTGGATATTACGTGCCTTTTAACGAAAGAGAGCAGGTTTTCGTGAGGACtttttgttatttcattttttaaaatgacaTTTACAGATTTCATGTAAAAAGGTTGCTGCAACAACAAAGACCATGCATTCATAGGAGAGGAGGATTGCTTGCTACCTTAAGGTGATAGAGTGAGGCAGCGTGCAGCATTTGTCCAGGCCAGCCCAGGCCCAGGGGTGTGACCAACCGAGCGGATGCCCTAGACTGTGCGGCAGGGGCGGCAGGCTCAACCATGACTCGGCTGATGTTAGGCCGGACCCTGGAGCGCATCTGCAAGGCTGTCCTGCTGCTCTGCCTGGTGCACTTTGTCATCATGATGATCCTCTACTTCGACGTCTACAGCCAGCGCTTTGACCAGATCTTCAGCCGCTTCAACAACGGCCGCAACGCCAGCCGCAACggacaccactactactacaacctcaGCCGGCCCAACGCCACCTTCGCCAGCTACCTGGCCACTGCAGACCAGCTGCTGCCCAGTGGACGACCTGAGGGAAATCACACGCCACCAACTACCAAACCTATACCACCATGCCCGGAGATACCACCTGGTCTGGTGGGCCGCCTCCTCATCGAGTTTGCCTCCCAGATGACAATGGAACGAGTGCAGAAAGAGAACCCAAACGTGACGGAGGGGGGCAAGTACACCCCACCGGACTGCCGTGCCAAACAGAAGGTGGCTATCATTATCCCgttcagacacagagacaaccaCCTCAAGTACTGGTTGCACTACCTGCATCCCATCCTACGACGGCAGAAGATCGACTACGCCATCTATATCATCACCCAGCTTGGCGAGGACACCTTCAACAGAGCCAAGCTCCTGAATGTGGGCTACACCGAGGCCCTGAAGGATGCAGAGTATGACTGCTTCATCTTCAGCGACGTGGACCTCATCCCTATGGACGACCGTAACCTCTACCACTGTTACGACCAGCCACGACACTTTGCCATCGCTATGGACAAGTTTGGCTTCAGGCTTCCTTATGCGGGGTACTTTGGCGGGGTTTCCGGGCTGAGCAAAAAACAGTTTCTCAAGATCAATGGCTTCCCCAACGAGTACTGGGGCTGGGGAGGAGAAGATGACGACATCTATAACAGGATCACCCTTAACGGGATGAAGGTGGTTCGACCGGACGTCCGGATCGGCCGCTACAGGATGATCAAACACGAAAGAGACAAGCACAATGAACCCAACCCACAAAGATTCAACAAGATCCAGAACACCAAGAACACTATGAAGAGAGACGGGATCAGCACGTTAACATACCGCGTGCTCCAGTTTAAGAAGTACCCTCTCTACACCAACATCTCTGTGGAGATCGGCAAGCCCCCGCCCCGGCCTTTCAGGGGCTAGACAGATAGAGCCCCGGCCTTGACatggagagggaaggatggaggaggaggaagggagatgggggagagaactATAATACACAGCAGAGAgccttcatctcctcctctacctccctcagCCTGACTCAGATACCCCCCACCGACCTGCGCTAGGAGTCTGCCCTGGCCTCTCACAGCCCAGTCTGTGTGGGGATACTGGTACACACTCGTTGCCCTCCCACCCTGCCAACAGGCTCGACGGTTACGGAAGGCCTACAGCATGGCTGGgaccctgactgactgactagctctAAGGAATAGATGAGGACAGAGGATATATCAGATTCGATTCAGATTCATTCCCCTGGCGACAGTGCTGCTCTGGAaatgcacacactgtacatgaaACACACAGCAATAAGTCCAGTGCTACTGGTGTCTCGGTCCTGATAACACAAAGCAACGGGGGTTCAAGAGCAGTCATATTATATTGGGTTGTTGATATACTGGGGGTTGGGTTTGGGATTCTGAGCAGAACCAAGAAGAACTGCCCTGATCTCTCTGTGAGAATCTGTCAATCAGAACACTATATCGGCGCAAAATGAATGTGTACTGTCTGTGCCTGCATCCAATGCAGGCTTTCCCCATTTCCCATGACGTTGACAAACGGTGCTGGAGGAGAGCAACAATGTGCACCAACACGTTTTATTAAGACAAAGAAGTGTGACTTTCTGTGGAGAGAATCAAGGTTGAGTGAACAAAGACCTGGTAGTGGATGGATATGGCTATTCAAGGAACTAGTTTTGACCTGTTTGTGGAGGAGAAAGGTCCAGCAAATAGAAGAGAAGATGGACTTCTGGCATGGTTCTGACAGGTGATTATTAGAGACTATTTTGTTGACGTGTTCTCACGCACAGAGAAGGTTACATTAGATACTGATGAAAGTGTAAACGTTTGCTGTATGACAATGTGTcccagacagttttagaagaggATCCTCTATTGCTCAAATACAAGACTCTTTGCTCCacttttttctttaatttctattTCAAAATGCCATCCACGTTTTTGGAAAAGAAAATGATAAGGCATTGATAACCTAGTGGTTTAAATTGTGAATACTGTAAGGACGGTCTAGTATGGTGAATATTTGCATTGTAGCATTCATTTCATCCATTCAAAATCAGAGGCACTGAAGCACTGAGGTGATAAGAACAGAACTGAAGTTAGTTATTTATTGAGTCCCCTCGAATAAATGGAAAACCAGCCCacatataataaaaaaaatatgaaatatataatTCGCTATTAACACCACCAATATATAAAAGCCTTTTAACGTCAGTAAGCTTTTTCTTCTGTCATTTTCTTCTCCTTTTCCTTTGTGTACTGCCTAAACACCAAATTGATGCCTTCAGAATTGTTATGAGGGGCAATGATAAGGAATGCTGCATTCTGTTGTGTGAAGTGATGTGGAAATCTCTCTTTTGTAATATCAATGGTTTTCTTGGCCTGGCTTGAGACAGTGAGTATTTAGAGATGCCCCAACCAACCCGTTTCCCCTCTGTTTATTTTAAAGAGCCTTTTCAAGTGCATTGACTGCATTTCccttctttttttgtttttttacaacaCCCTCCATTTCCTTTCATTTCACTCCCTGGCTCTACCATCcctctctccgtgtgtgtctgtgtgaacacCACAGTGTGTTTCTGTACTTGACCATCTGATGAATACACAGACAGCTGTGTCTGAAGCACACTGCTCCTCTATCGAAATATCAGGAGGACTTAAAAAATCATtactcttctctcgctctctcttgctctctctctctctctctctctctatctcattctGCTGCCTTTTCATTTTTGAGTGCACTACTACTGGTGTGAGAGCACCTCGCAAAGAGAATACTCTACTCCTCATTCTACACTGGAGACCAATGTACTTTTACGCTACTGCATTCTGGATGTCATTACTTCTGTCAAATGGGTGAATGCTGTGTATGTACTGCTTTCTGATGGCTGTGGACCATAAGAGTTTGACATATTACTGCCTATGGTCCCAGTACAGTATGATTCATCATCCTGCCAAGCTCCTGCTTTTATGTTCCATGTTGAGGGAATCATTTTCCTAAAGGCTAAATATACTACTTGGAACTGTGAGAAGAAGCTTTTATATATAGCTAGCATCATTACCTAAAATCTGCTTAGCAGAATGAGCTTACTACTGATGCAGTAGCACACAACCCTGAAAATATTTGGTACTGAAGTTTTAGTCAATGGTTTCATTAAATGAAATGCTTTgataaaaacaatgtttttgcCAGTGATTGTCAAATCGGCTGGTTAGGTCTACAGACTGGGCTTTTTATCAGAACTCCAGTCAAAGATCTTACTGTACAATTGGTGGATATTtggtttactgtagagtagactacagGATGTGATTTCTGTACATATCAGACTTGTATCAGACATCAAGTGCTAGCTATCATGTATTACAGGTGCATGAACAGGCATTACCATATCATTTGTGTTGTGAACAGAGAAAACGTCCAATAGAACTCAGTCTGTTCTGTTAACTTGATATCTATATGGAGATCATTCCCAAGTATGCTAGTACAGGAATAATCCATCCTATTGGTACTATTATATCCATTTAGTCATACATCATATTGGTATATCCATCGTATTATCTTGTTTGGCCTATTGGCTATATTCTGCCCCACTACCCCACTTATAGTGACTGTGGTGTCACATTGTAGGTACTGTATAATACAGATTTGATATGATGGTATTGACAGGGGGACCTTTCAGCACAAGCTTAGAGGCATCCTGCCCAGGACTGTGTCTCTCCCACACAGCTCGCCAGCTATAAACCAGTGATAAAGCACCGCTCCtcgtttgcgtcccaaatggcaccctattccctatctagtgcactacttttgaccagggcccttataGGAAAGTGGGTGCCATATGGGATGCATCCCTCTGcaccctccctccccacagtCAACTATTATTGTGTTCAATTTTGTCCTGGAAATTGATAATTGCTGGGCATCAGCTTTCTTTAttgaccatgtgtttgatgcatcCTTGAATAAGAAAAGCAGACAGGTGGCATACTAAGGTACTGTCCACCCTTTGGAGTGTGTCTGAAGTTCTCTTCATCCATCTGTTGGCAGACACTGCATGGCTTCCCCCTTCTACTTATACGTTTCAACCTAATGCCCATTAAGCAATATTTTCCCTCACTGTCAGAGCAGTCATTTCAAGGAAGTGGTGGGTAACTGAAAGAGAAACAGGATAGGATGAGGGCATTGGAGAACATCACCTACTGACTGCCTCGGGCCTTCAAGCTGGAGTGCATTTTTAAAGATGTACTGTATCTAGGTTTTGTACATTGAATGTTGAAAATGTTATATCTTATATAGAATGCATAATGTTATATCAAACCAACCTTTTCTATACAATCAATAAATCTAATGGTAAATGAGATACACTCACGTGATTGGTTTGTTTT

Function

NR:

description
beta-1,4-galactosyltransferase 2-like

GO: NA

KEGG:

id description
K07967 B4GALT2; beta-1,4-galactosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589482.2 True 5218 mRNA 0.45 7 21376698 21521909

Neighbor

gene id symbol gene type direction distance location
LOC110508727 LOC106599380 coding downstream 8597 21351652 ~ 21368101 (-)
LOC110508720 LOC106599373 coding downstream 536504 20815693 ~ 20840194 (-)
LOC110508719 LOC106599371 coding downstream 568125 20803211 ~ 20809150 (-)
LOC118936610 NA coding downstream 577011 20792140 ~ 20799687 (-)
LOC110508717 LOC106569256 coding downstream 646042 20685926 ~ 20730656 (-)
LOC110508730 vato coding upstream 950 21522859 ~ 21531316 (-)
LOC110508732 NA coding upstream 23331 21545240 ~ 21547961 (-)
LOC110508734 LOC106599390 coding upstream 143499 21665408 ~ 21700959 (-)
eif2b3 ei2bg coding upstream 185473 21707382 ~ 21785903 (-)
plk3 LOC106599391 coding upstream 331003 21852912 ~ 21862431 (-)
G2116669 NA non-coding downstream 16422 21360069 ~ 21360276 (-)
G2116668 NA non-coding downstream 18927 21357490 ~ 21357771 (-)
G2116648 LOC106599380 non-coding downstream 26893 21349402 ~ 21349805 (-)
G2116646 NA non-coding downstream 28074 21347615 ~ 21348624 (-)
G2116818 NA non-coding upstream 60445 21582354 ~ 21616449 (-)
G2116849 LOC106599389 non-coding upstream 108957 21630866 ~ 21640332 (-)
G2116873 NA non-coding upstream 160942 21682851 ~ 21683143 (-)
G2115838 NA other downstream 517168 20859140 ~ 20859530 (-)
LOC110508678 LOC105024244 other downstream 2254642 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 2367033 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 2410219 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 2591376 18784897 ~ 18785322 (-)
G2117313 NA other upstream 348776 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 351307 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 421072 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 1072624 22594533 ~ 22607806 (-)
LOC110508185 LOC106569033 other upstream 1803092 23317575 ~ 23353162 (-)

Expression


Co-expression Network