cop1 (rfwd2)


Basic Information

Item Value
gene id cop1
gene name rfwd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22202448 ~ 22212426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589508.2
AGGGTTCACCTTCGCAGCTTTAACGCACTACTCCTGCGTAGTAGGGGGCAGTAATGAATCTTTGCCAGGAATGTGGGTTCGTTTTGTGTCAGACATCTGAGTAACCGAGGAGATCCAGGAGATGGTTTCTAATTCCCTGAACGTAGACAGACAGCGGTGAAGATTGTATAATTCTTGTAACTTTGTTATGGTCGACTTGTTGACAAAAGCTTACAATTGAATCTAAAGAAGTTAGCTAACAGCGAGCCTGTGTGTATTCGTGCATTGTTATTTTATCTTAGCTCACTAGCACATTAGCTGgtaagctaacattagctagctagcaagctaactaactaaatagctgAGCCCGGATGCGGTGAACTACAACAAGACAAGTCTTTGGCCTTGGAAGAGTTGGGCATCAGGCTTGAATTATGTCAAGCAACCGTCAACAGCAAACTGGCGGTGGAACGGGGCCTGGGACAAGTAGCAGCAGTACCGGTGGCACTACCAATGCTAACGGTGCTACCAGCGTAGGCGGTAACGTCAGTACGAATGTGAACAATTCTTCAAATGTTGTGCCCTCACGGACTCTGGCTACAACTGGCGATGGGTTGCTCGTACCTGCAGCGGCTGTCCAGTCTCCAATAAGCTTAGCCACACTTAGCAGACCCAGTTCATCCTCTTCTGGCACCAGCAGAAAACGTCCTCTCCACCAAGCACCTCTCTACAATGGTCTCTTGAATTCCTACGAAGATAAAAGCAACGATTTTGTGTGCCCGATCTGTTTTGAAATGATTGAGGAGGCACACATGACAAAATGTGGACACAGTTTCTGCTACAAGTGCATTCGCCAGAGTTTGGAGGACAGCAATAGGTGCCCAAAATGTAACTACATCATTGACAACGTGGATCAGCTCTATCCAAACTTTCTTGTCAATGAACTCATTCTCAAACAAAAACAGAGATCAGATGAAAAACGTCTGAAGATGGACCATCCGAATGGGTCAAGATGGCAAGTGTTTCAAGACGTCCTGGGCACAGACCAAGAAAACCTAGATCTTGCTAATGTCAACTTGATGCTGGAACTCCTTGTACAGAAAAAGAAACAGCTGGAAGCGGAATCACAAGCTGCTCAACGTCAGATCTTAATGGAATTCCTCAAAGAAGCAAGAAGAAATAAAAGAGAGCAACTGGAGCAGTTGCAGAAGGAGCTAAACTTTTTGGAGGAGGATATCAAGCGTGTTGAGGAAATGAGTGGACTGTACTCACCAATGAGTGACATGGATCGTAACTTGGACAGCACTGTGCCCAATTTCGAGGCTCCCTCACCTGCACCtagTAGTCTTATGGATTCGACAGAGTATCCGAGTCAACCACCAGGTTTTGGTGGAACTTCCCAGGGTAAGAGGCAAACGTGGTACAACAGTACTCTGGCTTCACGTAGAAAGAGGCTCACAGCGCACTTTGAAGATCTGGAGCAATGCTACTTCTCTAACCGGATGACCCGATTAACAGATGACAGCAGGAACCTAAATCAACTGGATGATTTCATGGAGTGTCTCTCAAAGTTCACACGGTACAACTCTGTGCGGCCGTTGGCGACCCTGTCTTATGCTAGTGATCTCTACAACGGCTCCAGTATTGTCTCTAGCATTGAATTTGATCGTGACTGTGATTACTTTGCCATCGCTGGCGTCACCAAGAAAATCAAGGTGTTTGAGTATGGAACAGTGATCCAGGATGCTGTGGACATTCATTACCCTGTCAATGAAATGACGTGCAACTCCAAAATCAGCTGTATCAGCTGGAGCAGCTACCACAAGAATCTGTTGGCTAGCAGCGACTACGAGGGAACAGTCATCCTGTGGGATGGTTTCACTGGCCAAAGGTCAAAGGTCTATCAGGAGCATGAGAAAAGATGTTGGAGTGTCGATTTCAACCTCATGGATCCCAAGCTTCTAGCCTCTGGTTCTGATGATGCGAAAGTGAAGTTATGGTCTACCAACCTTGACAATTCAGTCGCCAGCATCGAGGCCAAAGCAAATGTGTGCTGTGTAAAGTTCAGTCCGACATCGAGGTATCACCTTGCTTTTGGATGTGCGGACCACTGTGTCCACTACTACGACCTCCGCAACACTAAACAGCCCATCATGGTGTTCAAAGGCCACAGGAAAGCTGTGTCCTATGCTAAGTTTGTCAACGGAGAGGAAATTGTATCTGCCTCAACAGACAGCCAGCTAAAGCTGTGGAATGTAAACAAGCCCCACTGCTTGCGCTCATTCAAGGGCCACATCAATGAGAAGAACTTTGTTGGCCTTGCCTCCAATGGGGACTATGTTGCGTGTGGAAGTGAGAACAACTCACTTTATCTCTACTACAAGGGGCTGTCCAAGACACTGCTGACATTCAAGTTTGACACTGTGAAGAGTGTGTTGGATAAAGACAAGAAAGAGGATGACACCAACGAGTTTGTCAGTGCCGTATGCTGGAGAGCTATGCCTGACGGGGAGTCCAATGTGCTGATTGCTGCAAACAGTCAAGGAACAATCAAGGTACTTGAGCTTGTTTAAGGTCCATCAGATCTCATCAAAGCCTCTGGAAATTACGGCTCCATTTCTTTCATGGCCAGTGGAGATTGGAGCGTATAGTTTCTTGGTCGAATAGAAACTTTGCAATTCTAGATCTGAGGAGCTGACCAGATTGGGAGAATGAATAAAACCAAAGTCCTTTGATTTTAATGAGCAAGAATACTTTGGAAAAGACTTTGTGTACATCATACACTAGGATTGTGGATGTATGTAATTCAGAATGAGATTGAGGGCTTTTCTGCACAAAAGTAGAAGATTACTCTTTTGAAAGCCTATTTGAATAAAGTTAATGACAAATAGAACATCTCTTAACATGATTTGAAATTGAATGGAAATGTTCTTTTTAATAAACTTGTTAAGTGTATTTCATAAGAGGTACATCCCGCAAGAAGGCCAAAgcacaagacaaaacaaaaataaaatgcaaAATGACTCATTGTATGAATGCATTTTCAACCCAATGTATACATCTGTCATCCTTTTCAATAGTCTTTGGTTTACCCCTATGTTTAGACTGTTTGTTTCAAGCAATGGCAACATCTTTTAACTGGACTTGTTTCCATTCTGCAATCAAGCTTTCAGTGGCATGGCTTAGAGTCAAGAATTTTGAGTTTAAAAATGCAACGGAAGATTGACTAATGACTCAAACATTTCACTCATGTTAcagtatatttttattttgtcaGTGAACATGTATTTGATAATACAAATCCTGTCTCCAAAATACTTTCATTTTGTATTAAATCATGATACATGTTGCAACCAGAACACGTCCAACACATGAGATCAAGTGGATTTGCTAGAATGCCAAGATGTACCTATTTTCTGAGAAACAACCAAGAGATGTTCTGTATTTGTATACCTAAATAAATTATTTGCAGAGAA
>XM_021589509.2
CAGGGTTCACCTTCGCAGCTTTAACGCACTACTCCTGCGTAGTAGGGGGCAGTAATGAATCTTTGCCAGGAATGTGGGTTCGTTTTGTGTCAGACATCTGAGTAACCGAGGAGATCCAGGAGATGGTTTCTAATTCCCTGAACGTAGACAGACAGCGGTGAAGATTGTATAATTCTTGTAACTTTGTTATGGTCGACTTGTTGACAAAAGCTTACAATTGAATCTAAAGAAGTTAGCTAACAGCGAGCCTGTGTGTATTCGTGCATTGTTATTTTATCTTAGCTCACTAGCACATTAGCTGgtaagctaacattagctagctagcaagctaactaactaaatagctgAGCCCGGATGCGGTGAACTACAACAAGACAAGTCTTTGGCCTTGGAAGAGTTGGGCATCAGGCTTGAATTATGTCAAGCAACCGTCAACAGCAAACTGGCGGTGGAACGGGGCCTGGGACAAGTAGCAGCAGTACCGGTGGCACTACCAATGCTAACGGTGCTACCAGCGTAGGCGGTAACGTCAGTACGAATGTGAACAATTCTTCAAATGTTGTGCCCTCACGGACTCTGGCTACAACTGGCGATGGGTTGCTCGTACCTGCAGCGGCTGTCCAGTCTCCAATAAGCTTAGCCACACTTAGCAGACCCAGTTCATCCTCTTCTGGCACCAGCAGAAAACGTCCTCTCCACCAAGCACCTCTCTACAATGGTCTCTTGAATTCCTACGAAGATAAAAGCAACGATTTTGTGTGCCCGATCTGTTTTGAAATGATTGAGGAGGCACACATGACAAAATGTGGACACAGTTTCTGCTACAAGTGCATTCGCCAGAGTTTGGAGGACAGCAATAGGTGCCCAAAATGTAACTACATCATTGACAACGTGGATCAGCTCTATCCAAACTTTCTTGTCAATGAACTCATTCTCAAACAAAAACAGAGATCAGATGAAAAACGTCTGAAGATGGACCATCCGAATGGGTCAAGATGGCAAGTGTTTCAAGACGTCCTGGGCACAGACCAAGAAAACCTAGATCTTGCTAATGTCAACTTGATGCTGGAACTCCTTGTACAGAAAAAGAAACAGCTGGAAGCGGAATCACAAGCTGCTCAACGTCAGATCTTAATGGAATTCCTCAAAGAAGCAAGAAGAAATAAAAGAGAGCAACTGGAGCAGTTGCAGAAGGAGCTAAACTTTTTGGAGGAGGATATCAAGCGTGTTGAGGAAATGAGTGGACTGTACTCACCAATGAGTGACATGGATCGTAACTTGGACAGCACTGTGCCCAATTTCGAGGCTCCCTCACCTGCACCtagTAGTCTTATGGATTCGACAGAGTATCCGAGTCAACCACCAGGTTTTGGTGGAACTTCCCAGGGTAAGAGGCAAACGTGGTACAACAGTACTCTGGCTTCACGTAGAAAGAGGCTCACAGCGCACTTTGAAGATCTGGAGCAATGCTACTTCTCTAACCGGATGACCCGATTAACAGATGACAGCAGGAACCTAAATCAACTGGATGATTTCATGGAGTGTCTCTCAAAGTTCACACGGTACAACTCTGTGCGGCCGTTGGCGACCCTGTCTTATGCTAGTGATCTCTACAACGGCTCCAGTATTGTCTCTAGCATTGAATTTGATCGTGACTGTGATTACTTTGCCATCGCTGGCGTCACCAAGAAAATCAAGGTGTTTGAGTATGGAACAGTGATCCAGGATGCTGTGGACATTCATTACCCTGTCAATGAAATGACGTGCAACTCCAAAATCAGCTGTATCAGCTGGAGCAGCTACCACAAGAATCTGTTGGCTAGCAGCGACTACGAGGGAACAGTCATCCTGTGGGATGGTTTCACTGGCCAAAGGTCAAAGGTCTATCAGCATGAGAAAAGATGTTGGAGTGTCGATTTCAACCTCATGGATCCCAAGCTTCTAGCCTCTGGTTCTGATGATGCGAAAGTGAAGTTATGGTCTACCAACCTTGACAATTCAGTCGCCAGCATCGAGGCCAAAGCAAATGTGTGCTGTGTAAAGTTCAGTCCGACATCGAGGTATCACCTTGCTTTTGGATGTGCGGACCACTGTGTCCACTACTACGACCTCCGCAACACTAAACAGCCCATCATGGTGTTCAAAGGCCACAGGAAAGCTGTGTCCTATGCTAAGTTTGTCAACGGAGAGGAAATTGTATCTGCCTCAACAGACAGCCAGCTAAAGCTGTGGAATGTAAACAAGCCCCACTGCTTGCGCTCATTCAAGGGCCACATCAATGAGAAGAACTTTGTTGGCCTTGCCTCCAATGGGGACTATGTTGCGTGTGGAAGTGAGAACAACTCACTTTATCTCTACTACAAGGGGCTGTCCAAGACACTGCTGACATTCAAGTTTGACACTGTGAAGAGTGTGTTGGATAAAGACAAGAAAGAGGATGACACCAACGAGTTTGTCAGTGCCGTATGCTGGAGAGCTATGCCTGACGGGGAGTCCAATGTGCTGATTGCTGCAAACAGTCAAGGAACAATCAAGGTACTTGAGCTTGTTTAAGGTCCATCAGATCTCATCAAAGCCTCTGGAAATTACGGCTCCATTTCTTTCATGGCCAGTGGAGATTGGAGCGTATAGTTTCTTGGTCGAATAGAAACTTTGCAATTCTAGATCTGAGGAGCTGACCAGATTGGGAGAATGAATAAAACCAAAGTCCTTTGATTTTAATGAGCAAGAATACTTTGGAAAAGACTTTGTGTACATCATACACTAGGATTGTGGATGTATGTAATTCAGAATGAGATTGAGGGCTTTTCTGCACAAAAGTAGAAGATTACTCTTTTGAAAGCCTATTTGAATAAAGTTAATGACAAATAGAACATCTCTTAACATGATTTGAAATTGAATGGAAATGTTCTTTTTAATAAACTTGTTAAGTGTATTTCATAAGAGGTACATCCCGCAAGAAGGCCAAAgcacaagacaaaacaaaaataaaatgcaaAATGACTCATTGTATGAATGCATTTTCAACCCAATGTATACATCTGTCATCCTTTTCAATAGTCTTTGGTTTACCCCTATGTTTAGACTGTTTGTTTCAAGCAATGGCAACATCTTTTAACTGGACTTGTTTCCATTCTGCAATCAAGCTTTCAGTGGCATGGCTTAGAGTCAAGAATTTTGAGTTTAAAAATGCAACGGAAGATTGACTAATGACTCAAACATTTCACTCATGTTAcagtatatttttattttgtcaGTGAACATGTATTTGATAATACAAATCCTGTCTCCAAAATACTTTCATTTTGTATTAAATCATGATACATGTTGCAACCAGAACACGTCCAACACATGAGATCAAGTGGATTTGCTAGAATGCCAAGATGTACCTATTTTCTGAGAAACAACCAAGAGATGTTCTGTATTTGTATACCTAAATAAATTATTTGCAGAGAA

Function

symbol description
rfwd2 E3 ubiquitin-protein ligase RFWD2

NR:

description
E3 ubiquitin-protein ligase RFWD2 isoform X2

GO: NA

KEGG:

id description
K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589508.2 False 3458 mRNA 0.43 20 22202448 22212425
XM_021589509.2 True 3456 mRNA 0.43 20 22202448 22212426

Neighbor

gene id symbol gene type direction distance location
tnr tnr coding downstream 77147 21966295 ~ 22125301 (-)
LOC110508740 kiaa0040 coding downstream 253891 21942981 ~ 21948557 (-)
mrps14 mrps14 coding downstream 325739 21873216 ~ 21876709 (-)
LOC110508737 cacybp coding downstream 335413 21864614 ~ 21867035 (-)
plk3 LOC106599391 coding downstream 340017 21852912 ~ 21862431 (-)
astn1 astn1 coding upstream 74240 22286666 ~ 22527081 (-)
dars2 dars2 coding upstream 583213 22795639 ~ 22816743 (-)
LOC110508750 LOC106569069 coding upstream 609646 22822072 ~ 22828641 (-)
LOC110508754 shcbp1l coding upstream 721834 22934260 ~ 22939565 (-)
nmnat2 nmnat2 coding upstream 830112 23042538 ~ 23055346 (-)
G2117557 NA non-coding downstream 1518 22200522 ~ 22200930 (-)
G2117553 NA non-coding downstream 4350 22197771 ~ 22198098 (-)
G2117551 NA non-coding downstream 5267 22196969 ~ 22197181 (-)
G2117536 NA non-coding downstream 16031 22179204 ~ 22186417 (-)
G2117523 NA non-coding downstream 28464 22173783 ~ 22173984 (-)
G2117567 NA non-coding upstream 1833 22214259 ~ 22214654 (-)
G2117790 NA non-coding upstream 9204 22221630 ~ 22221854 (-)
G2117792 NA non-coding upstream 10409 22222835 ~ 22223035 (-)
G2117793 pappa2 non-coding upstream 11134 22223560 ~ 22223853 (-)
G2117797 pappa2 non-coding upstream 15233 22227659 ~ 22228018 (-)
G2117313 NA other downstream 331395 21870685 ~ 21871053 (-)
G2115838 NA other downstream 1342918 20859140 ~ 20859530 (-)
LOC110508678 LOC105024244 other downstream 3080392 19116082 ~ 19185326 (-)
G2118200 brinp2 other upstream 382107 22594533 ~ 22607806 (-)
LOC110508185 LOC106569033 other upstream 1112575 23317575 ~ 23353162 (-)
LOC110508783 LOC106599501 other upstream 2452448 24664869 ~ 24677152 (-)
G2120836 NA other upstream 2518248 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 2931636 25144062 ~ 25148520 (-)

Expression


Co-expression Network