LOC110508750 (LOC106569069)


Basic Information

Item Value
gene id LOC110508750
gene name LOC106569069
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22822072 ~ 22828641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589528.2
CGCTGAAATACAcaacaattcacatttcctgtcgATTGTAATTTTATGGAATGTCTAAAGAAAGCGTAGCTTGTGATTCTGCAATGTAGCTTTTTAAATATTGGCGATCTGTCACTTTGCTAGACGTTCGAATGGAAATATAAGGTTGGCAAAAAGTTGTGGGACCAAAGGTTGTTTTTCTGTGCATGGACGGAAAGCCAATGCGCAGGGGTACAAGTGCACGCCCAGACAATACCGGAATGGACATCACCGCACGCTGCACACTGGGTGACCCCAACAAGCTCCCGGAGGGTGTGCCCCAGCCGGCACGCATGCCCTATGTGTCGGACAAGCACCCTCGCCAGACGTTAGAGGTCATCAATCTGCTACGCAAGCACAGGGAACTGTGTGATGTCGTGTTGGTGGTTGGCGCCAAAAAGATATATGCCCACCGGGTGATCCTGTCGGCCTGCAGCCCTTACTTCAGGGCCATGTTCACAGGCGAGCTGGCTGAGAGTCGGCAGACTGAGGTTGTGATCCGGGACATTGACGAGCGGGCCATGGAGCTTCTCATTGACTTTGCCTACACTTCACAGGTTACTGTAGAGGAGGGCAACGTGCAGACGCTGCTGCCCGCCGCTTGTCTGTTACAACTGGCCGAGATTCAGGAGGCTTGCTGTGAGTTTCTCAAGCGTCAGTTGGACCCCTCCAATTGCCTGGGTATCCGTGCATTTGCTGACACCCACTCCTGCCGCGAGCTGCTGAGGATAGCTGACAAGTTTACACAGCACAACTTTCAAGAGGTGATGGAGAGTGAGGAGTTCATGCTGCTTCCAGCCAACCAGCTGATAGACATTATCTCCAGCGATGAACTGAATGTGCGAAGTGAAGAGCAGGTTTTCAACGCAGTCATGGCCTGGGTCAAGTACAGCATTCAGGAGCGCCGGCCACAGCTGCCACAGGTCCTCCAGCATGTTCGTCTTCCTCTTCTGAGCCCTAAATTTCTGGTGGGAACGGTGGGATCAGACCCTCTCATCAAAAGTGATGAGGAGTGCAGAGACCTGGTTGATGAGGCAAAGAACTACCTCCTCTTGCCCCAAGAGCGACCTCTAATGCAAGGGCCAAGAACACGGCCCCGGAAGCCCATCCGGTGTGGAGAAGTGCTGTTTGCAGTTGGAGGGTGGTGCAGTGGGGATGCCATTTCCAGTGTGGAGCGATATGACCCACAGACCAACGAGTGGCGCATGGTGGCTTCCATGAGTAAGAGGCGCTGTGGAGTGGGGGTCagtgtccttgatgatcttctctATGCTGTCGGCGGCCATGACGGGTCCTCATATCTCAACAGTGTGGAAAGGTATGACCCCAAGACCAATCAGTGGAGTAGTGATGTGGCTCCCACCAGCACGTGCAGGACCAGTGTGGGTGTGGCTGTCCTGGGAGGGTATCTGTACGCAGTAGGGGGCCAAGATGGAGTATCGTGTCTCAACATTGTTGAAAGATATGACCCCAAGGAGAACAAATGGACACGCGTGGCCTCGATGAGCACCAGGCGCCTGGGTGTAGCCGTGGCTGTACTGGGGGGCTTCCTCTATGCAGTGGGAGGCTCTGATGGCACGTCCCCTCTCAATACAGTGGAGAGGTACAATCCGCAAGAGAACCGCTGGCACACCGTCTCTCCCATGGGCACCAGGAGGAAACACCTAGGCTGTGCAGTGTACCAGGACATGATCTACTCTGTAGGCGGTCGTGACGACACCACCGAGCTGAGCAGTGCCGAGCGCTACAACCCCAGGACCAACCAGTGGTCACCTGTTGTAGCCATGACTTCAAGACGTAGTGGGGTTGGACTAGCGGTGGTAAATGGTCAGTTAATGGCTGTGGGCGGATTTGATGGGACAACATATCTTAAAACAATAGAGGTCTATGATCCTGACGCTAACACATGGAGACTCTACGGTGGAATGAACTACAGGCGACTTGGAGGAGGGGTTGGTGTTATCAAAATGACTCACTGTGAATCCCACATATGGTAACGCCCCCAGTTTAAAGGACTCACCGTCGCTTGTGCCTCTGAAAGAAACATTGTTTATCGTGCAAGGAAGGAAGACTATATTAACTTTAACTCATCCACAGCCGTGTAATTGGCAAGCCAAGGAAATGTCTTGAGTGACTACAAGATGTGTCAAGTCTGGAAGGCTTCTCATCTAGTAGTCTATGGTTCATCTCTCTATTCTGTACTTCCTGTATTATGACTTGACACGCCAAGCCAGCCAAGGCCAAGAGGAACCAACTGAATAGGCCTGCATCAATCACATGAGGAACTATTATTTATGACATCACTGCGGCAAACACTTAATTTCCCCTTTTTCTGTTACTGAAATGGAATGATGCAGCTGCACTTTAGGATACAGTTCAGTCTTTTGCTGTGTGACCTGTTATATTATACCAACATTGAGTTTACATTTAAATATTAAATGGGGCATGACGAAGAATCGTCAAAGAGAACTGATGTTTAACTGAAAATGTAGGATGTGGTCGCATTGCTTCTCCTGATCTTCATTGTGAATAGTTTAACTTGTTAGGCAGTTGTTTGAATCTCCTCTAAATTGAATGCACTGTGATTATAATTATTTTAGAATATTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K10457 KLHL20, KLEIP; kelch-like protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589528.2 True 2625 mRNA 0.50 11 22822072 22828641

Neighbor

gene id symbol gene type direction distance location
dars2 dars2 coding downstream 5329 22795639 ~ 22816743 (-)
astn1 astn1 coding downstream 294991 22286666 ~ 22527081 (-)
cop1 rfwd2 coding downstream 609646 22202448 ~ 22212426 (-)
tnr tnr coding downstream 696771 21966295 ~ 22125301 (-)
LOC110508740 kiaa0040 coding downstream 873515 21942981 ~ 21948557 (-)
LOC110508754 shcbp1l coding upstream 105619 22934260 ~ 22939565 (-)
nmnat2 nmnat2 coding upstream 213897 23042538 ~ 23055346 (-)
LOC110508760 LOC106599438 coding upstream 275430 23104071 ~ 23118323 (-)
LOC110508762 LOC106599443 coding upstream 315578 23144219 ~ 23154829 (-)
LOC110508763 LOC106599445 coding upstream 331515 23160156 ~ 23190193 (-)
G2119243 NA non-coding downstream 18287 22801836 ~ 22803785 (-)
G2118394 NA non-coding downstream 27753 22794091 ~ 22794319 (-)
G2118359 NA non-coding downstream 29316 22792419 ~ 22792756 (-)
G2118251 NA non-coding downstream 144657 22677197 ~ 22677415 (-)
G2118250 NA non-coding downstream 147143 22674664 ~ 22674929 (-)
G2119237 NA non-coding upstream 76543 22905184 ~ 22907635 (-)
G2119393 NA non-coding upstream 204412 23033053 ~ 23038249 (-)
G2119394 NA non-coding upstream 204589 23033230 ~ 23038411 (-)
G2119395 NA non-coding upstream 205130 23033771 ~ 23039094 (-)
G2119398 lamc2 non-coding upstream 208169 23036810 ~ 23041327 (-)
G2118200 brinp2 other downstream 214266 22594533 ~ 22607806 (-)
mrps14 mrps14 other downstream 945422 21873216 ~ 21876709 (-)
G2117313 NA other downstream 951019 21870685 ~ 21871053 (-)
G2115838 NA other downstream 1962542 20859140 ~ 20859530 (-)
LOC110508185 LOC106569033 other upstream 496360 23317575 ~ 23353162 (-)
LOC110508783 LOC106599501 other upstream 1836233 24664869 ~ 24677152 (-)
G2120836 NA other upstream 1902033 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 2315421 25144062 ~ 25148520 (-)
G2121457 NA other upstream 2369607 25198248 ~ 25274626 (-)

Expression


Co-expression Network