LOC110508754 (shcbp1l)


Basic Information

Item Value
gene id LOC110508754
gene name shcbp1l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22934260 ~ 22939565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589533.2
gGAGTCCTTGGTTGAAAGACCTTGCCATcacaatctagctagctaaactatTTTAGCAAACCATTACATATACAATATCTCTCAATCATGAAAACAGACGGTCTAGAAGATAAATTGCAATTGAGTCACTCGGACACTTGGCTTTATCAAATAGTTCGCTTGTGAACAAACTTATTCTGTTCTTTTCTGAGAGTTTTGTGATGGCGTATGCTACTTCCGGCTGCTGCTAGTACCTCGTGACCGTTTCGCGCTCAATTTTCAAATCTGAACCAACCCAGGCTCGCGGTGCTGGGGCAAAAGTCGTTGGCCTTAGCTAACGGTAAGCAAGCGAACTAGGTTTATTTTCGAAAATAATCACGTTTATTAGCAAATCTTATACAATGGCAACTTGTGCCCCTGATCCTTTGTTTCCTCTGGAAGATTTTCATGATGAAACAGCACAGAAAGCAAGcaaggaacattttaaaatacCTGTCTCAAGTGAGATGGCCCATGAAAAGGCCCAGTCTCATACCAGTACTATTCCGAACAGTGAGGTGCCAAGCTATGATGATGGTTCAACATCATTCTCTGCTGCTGACGCTCCTCAAATCGTAAGGAATAAAGTCCCTATGAGAAGGAAACTTCTGGCGCCAAATCCTGACAGCGAAGAGCCATTTGATGCTAAAGAGGCCCAAGTCTTGCCACAAATCTTCATCTCCAACAAGACATACACCTACGATGAACGTGTTGCTCTCTTTTGCGATCATATTATTGGCCAGTGTTCTGCAGAGGATGCAGATGAAGCTATAAGTTTCTACATAATAGAAAAACTTGCCAGCAAACGCACTTGGACTGCAGTGTGGAAAACTTCCCCAGAAGTCCTGTTGGTAAACTGCGATATTGGGGACCTGCCATTCGTGGGTGTGCTTGTCGACGTCAACTGTACACCATGCGAAGGAAAAAGCCTCCCTCTTCGAGTGTCCATTTCTGTGGCAGAACCATATTCCTCAAACATTGCCAACTTACCAAGAGAGTTGGTTGAAGATGTGTTGAGGGAACATGACTACTCTGTGCCAATCTTGGATGTCTACCCCATACAAGGGATGGGAGCTGATGTAGACAACATTGCAGAGTATCTGGAACATGCAAGGTTTTTCTACGATTTTCTCTGGAGGGACTGGGATGATGAGGAGGAATGTGACGAGTACGCAGGACTCATTGAGAAACGCATACAGCTGTATTATGACATTCAGGATGGAACCATCCCTGGTCCAATCAGCGAGCGATACCGCAAGACCCTGGAGGAGTACCGAAGCAAACGACTGGACTTGACAAAATTCCAGACCAAAATCCGTGGGGAGGCCTTACCAGGGGAGGCTGTGGAGTGCTGGAAAAAATACTACGAAATGTCAATGCTTTGTGGGCTCCTGAAGTTCTGGGAAGACCTGCGACTCAGGAGCCATGGACCCTTCTATCCAAGGATCTACAAACGCAGAAAGGGGCAGAGAACATCTGGAAGGATTGTGACACACATTGTTGCCCAGATAATGACAACAGACATGATCAAGAACTTCTCGGCGGACACTCTGATCCAGCAGCATGACAGTCTGTCAGCCGCTCTGGACTCCTGCTTCTCTGGGGACACGGTGGTGGTCTTCCCAGGAGAGTACCACGCAGTTGCGCTGGCATCCCTCACAGACGACATCACAATAAAGGgagaaggagaaaggaaaGAGGTGCTGTTCTACTCTGACCCATCCCATGACAACTTTGTGGCGTCCAAAGCCTCCAAGGTGATGCTCATGAACCTGACATTGGTGCAGCATGGAACCTGTGATGGCATTGTTGTGGTGGAGTCGGGACAGTTGACCCTGGACAACTGTGTGTTGAAGTGTCAAGGCACAGGAGTGTGTGTCCTGACTGGAGCCTCTCTGGTCATGAAGAACTGTGAGATATCTGGTGCAAAGGGTGCAGGGGTGGAGTTGTACCCTGGCAGCATTGCAGAGCTGCATCGGAATGAAATCCATCACTGCAGCAACCAGCTGGCGAAAGACTCGAAAGGTTCACAGGGTGGAATCAATCTCAAGGTTCTCCCTCAGCCCCAGCTGAAGCTGACCGACAATCACATTCATGATAACCACGGGTATGGCGTGACCATTCTTGTTCCTGACAATCTGTACAAAGCGAGTGAGGACCTGGAGCAGACAGCCAGTGGGGACAAGAACGAGACAGATTATCTTTCCAAGGCCCTGCAGAAACTCAGTTTGGAGATCACCACAAACAAACTGGAGTCAAACACCAAGGGCGATATAGGATTGCTGCGCAAAATGTGGGTGAATTCCTGAGTCTAGGATTGCAGCATAAATGTGTTGTACACAATAGTTAAAACAATTTAAGTAACCAGACTGACAATTTTATTGGATGTAGCTGTTGCTCAGTATATTACCATGTAACATACGTTATTACTTTAGGTAGATTGATTTGTTTCAAGTGTTAGATTATATTTCTGTTCGTATCCATTTCAGAGAAAGATCCCAGCTTTTGTACGCACTAGCCCTATAAACAAAAGTGCACTTTttgaacatttcaataaaatGTGTTATTCAAAATGAATTGTGCCTTTACAGACGAACTGCTAAGAAAATCTGGCAGTGTTGGAAAAAATGTAATTTATTACTTAGTAATGGCAGGAAACATACTTgagttgtatataactgacaaaATTAGGCTCATGGCATGAAATACTTTTGGAATTTTCCATTAGCCAAActaacaaattatttttttttatgctTAATACCAGGGGAAAACcttgattttggggggggggggg

Function

symbol description
shcbp1l Predicted to be involved in male meiosis cytokinesis; positive regulation of chromosome organization; and spermatogenesis. Predicted to be located in cytoplasm. Predicted to be active in meiotic spindle.

NR:

description
testicular spindle-associated protein SHCBP1L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589533.2 True 2815 mRNA 0.45 10 22934260 22939565

Neighbor

gene id symbol gene type direction distance location
LOC110508750 LOC106569069 coding downstream 105619 22822072 ~ 22828641 (-)
dars2 dars2 coding downstream 117517 22795639 ~ 22816743 (-)
astn1 astn1 coding downstream 407179 22286666 ~ 22527081 (-)
cop1 rfwd2 coding downstream 721834 22202448 ~ 22212426 (-)
tnr tnr coding downstream 808959 21966295 ~ 22125301 (-)
nmnat2 nmnat2 coding upstream 102973 23042538 ~ 23055346 (-)
LOC110508760 LOC106599438 coding upstream 164506 23104071 ~ 23118323 (-)
LOC110508762 LOC106599443 coding upstream 204654 23144219 ~ 23154829 (-)
LOC110508763 LOC106599445 coding upstream 220591 23160156 ~ 23190193 (-)
LOC110508765 crf1 coding upstream 271273 23210838 ~ 23212507 (-)
G2119237 NA non-coding downstream 26625 22905184 ~ 22907635 (-)
G2119243 NA non-coding downstream 130475 22801836 ~ 22803785 (-)
G2118394 NA non-coding downstream 139941 22794091 ~ 22794319 (-)
G2118359 NA non-coding downstream 141504 22792419 ~ 22792756 (-)
G2118251 NA non-coding downstream 256845 22677197 ~ 22677415 (-)
G2119393 NA non-coding upstream 93488 23033053 ~ 23038249 (-)
G2119394 NA non-coding upstream 93665 23033230 ~ 23038411 (-)
G2119395 NA non-coding upstream 94206 23033771 ~ 23039094 (-)
G2119398 lamc2 non-coding upstream 97245 23036810 ~ 23041327 (-)
G2119432 NA non-coding upstream 152758 23092323 ~ 23174530 (-)
G2118200 brinp2 other downstream 326454 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 986002 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 1057610 21873216 ~ 21876709 (-)
G2117313 NA other downstream 1063207 21870685 ~ 21871053 (-)
G2115838 NA other downstream 2074730 20859140 ~ 20859530 (-)
LOC110508185 LOC106569033 other upstream 385436 23317575 ~ 23353162 (-)
LOC110508783 LOC106599501 other upstream 1725309 24664869 ~ 24677152 (-)
G2120836 NA other upstream 1791109 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 2204497 25144062 ~ 25148520 (-)
G2121457 NA other upstream 2258683 25198248 ~ 25274626 (-)

Expression


Co-expression Network