lamc1 (LOC106599430)


Basic Information

Item Value
gene id lamc1
gene name LOC106599430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22941732 ~ 23022726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589534.2
TAGGGTGTAGTCGGATATAGTTATTTTCCTTCTGAAGTTTCTCCATGGCGGTGGACACAAAGCACTGAGACCGTGGAAGTCTGCGTTTAGGGCAAGGACAATAATTCTGGAAGGAACAAACGCATTTTTAAGGAGAAGCAATTGAAAGTTTTCCGTATGGTTTTACTTGTTTTATCAAGATTGCGGTAACTGGGTAGTTACCAATAAGTTGAAAGTTCAAAGGTGTAATAGAGGAATTCGTGTAGTTGTAGCTTAAGTTTGAAACGGCTTTTAGAATAGCTGAGAATGGGTTGGTTTATTCAAGTTTTGTTTTCATTTACTTGTTTGGCTGTCTTCAGCCACAGTGCTATGGATGAATGCACTGACGATTCGAGTCGTCCTCAGCGATGCATGCCAGAGTTTGTCAACGCTGCTTTCAATGTCACTGTGGTAGCTACCAATACTTGTGGCTCTCCACCAGAAGAATACTGCGTACAAACCGGGGTTACGGGGGTCACCAAGTCGTGCCACATCTGCGATGCCAGGGATCGCAGACAACACCACAGTGCTGTGTACCTCACCGATTACAACAATCAACAGGACACCACCTGGTGGCAAAGTCAAACTATGTTAGCGGGCATCCAGTATCCACACTCAATCAATCTAACTCTTCATCTTGGCAAGGCTTTCGACATCACTTACGTGCGACTCAAGTTCCACACCAGCCGCCCAGAGAGCTTCGCCATCTACAAGCGCACAAGTGAGGATGGACCATGGACGCCTTACCAGTACTACAGTGGCTCCTGTGAGAAGACCTACCAGAAGACCAACAGGGGCTTCATCCGCACCGGACAGGACGAACAACAGGCACTGTGCACAGACGAGTTCAGCGACATCTCACCCCTGACTGGAGGAAACGTCGCCTTCTCCACCCTTGAAGGCCGGCCCAGTGCTTACAACTTTGACAACAGCCCAGTTCTTCAGGAATGGGTGACAGCCACAGATATCAAAGTGACCCTGAACAGGCTCAACACATTCGGAGATGAAGTTTTCAATGATCCCAAGGTCCTGAAATCCTACTACTACGCTATCTCAGACTTTGCAGTGGGAGGAAGGTGTAAGTGCAATGGCCATGCGAGTGAGTGTGCGAAAAATAACGGTTTCGGCAAGCCGGTTTGCAACTGCAAGCACAACACGGAGGGCGATGACTGCAATGTGTGCAAGCCGTTCTACAACGACCGTCCCTGGAGGAGAGCTACAGCCAATAACCCTAACGAGTGTCTGCCGTGCAACTGTAATGGCAAGAGTGCAGAGTGCTACTTCGACCCTGAGCTCTACCGTGCCACCGGCCACGGAGGACACTGCCGCAACTGTGCCGACTACACAGGCGGGCCCAACTGTGAGCGCTGCCTGGACAACTACTACAGAGACACATCTGGCACCCGCTGCCTGCCCTGCAGCTGCAACCCAGTAGGCTCTCTGGCTACTCAGTGTGACAAAACAGGACGCTGCAGCTGTAAACCCGGTGTGATGGGGGACAAGTGTGACCGCTGCCAACCTGGCTTTCACACGTTGACCGAAGCAGGCTGCAGACCTTGCTCCTGTAACCCTTCCGGAAGCACACAGGAGTGTGATGTCCAGACAGGCCGTTGCCAGTGCAAGGACAACGTGGAGGGCTTCAGCTGTGACAGGTGTAAGCTGGGCTACTTCAACATGGACCCGCAGAACCCTCAGGGTTGCACTCCGTGCTTCTGCTTCCAGCATTCCTCTGTCTGTGAGAGCGCTGAAGGCTACAGCATTGACACAGTCTCCTCCACCTTCAACCGAGATGATGAGCAGTGGACAGGCCAGCAGCGTGACAGCTCCAGTGTTTCAGTCCAGTGGTCCACTGGTGGGGAGATCTCCCTCATCTCCGATGACTACTTCCCAATGTACTTTGTGGCTCCAGAGCGGTTCCTGGGCAATCAGCTGCTGAGCTACGGCCAGAACCTCACCCTGAACTTCCGGGTGGACAGGAGAGACACACGTCTCTCAGCTGAGGATGTGGTTCTGGAGGGGGCTGGTCTCAGAGTGGCTGTGCCTCTCATTGCTCAGGGAAATGCCTATCCCGGAGAGAACATGCAGACGTTTGTGTTCAGGCTCCACGACAGCACAGACTATCCCTGGAGGCCCACCCTCACTCACTCAGAGTTCCAGAAGCTTCTGCACAATCTGACGTCCATCAAGATCCGTGGCACCTACAGCGAGAGAAGTGCTGGTTACCTTGACGATGTGAAGCTTATCACGGCGAAGAAAGGTCCCGGGAGCCCAGCTCGCTGGGTAGAGAAGTGTACCTGCCCTCAAGGCTACGTGGGACAGCACTGTGAGAGCTGCGCCCTGAGATACAGGAGGAGCAGACCAGACCTGGGGCCCTTCAGTTCCTGTGACTCCTGCAGCTGTAACGGACACAGTGACACGTGCAACCCCGACACAGGGATGTGTGACTGCCTACACAACACAGCTGGGCTCAGTTGTGAGAGATGTAAAGACGGTTACTATGGAGACTCCACTGTGGGGAGTTCCAGCGACTGCAAGCCCTGCCCCTGCCCCGGAGGATCCACTTGTGCTGTTGTGCCCAAGACAAAGGAGGTTGTCTGCACCAACTGTCCTACTGGAACCACAGGCAAGCGCTGCGAGCTGTGTGACGACGGTTTCTTCGGAGACCCCCTGGGGGAGAACGGACAGGCGAGGGTCTGTCGGGCCTGTAAGTGTAGCGACAACATCGACCCCAACGCTGTGGGCAACTGTGACAGAGAGACCGGGGAGTGCCTCAAGTGTATCTACAACACAGACGGCTTCTTCTGTGACCGTTGCAAAGAGGGCTTCTATGGAAACCCGCTGGCCACCAACCCCAACGACAAGTGCAAAGCCTGCTCCTGCTCTCCATATGGCACAGTGGACAGACAGACCAGCTGTCTACAGGTCACAGGCCAGTGCCAGTGTTTCCCCCACGTCACCAACAGGGACTGCAGTGCCTGTCAGCCTGGCTTCTTCAACCTGCGGAGCGGAACAGGCTGTGAACAATGCAACTGCAATTCTATTGGGTCCACCAACGGTCAGTGTGACATCGGTTCCGGTCAGTGTGAATGCCAGCCCGGCGTCACCGGTCAGCGCTGTGAACGCTGTGAGGTCAACTTCTTCGGATTCGGATTGTCAGGCTGCAAACCGTGCGACTGTGACCCAGAGGGCTCCTCGACAGCCCAGTGTAAAGAAGATGGCCGCTGTGCGTGCCTTCCAGGCTTTGTGGGAGCCAGGTGTGACATGTGTGAGGAGAACTACTTCTACAACCGCTCTACTCCCGGCTGCCAGCAGTGTCCGTCCTGTTACTCCCTCGTCAGAGACAAGGTGAACCAGCAGAGACAGAAGCTGCATGACCTGCAGACTTTGATTGACAACCTGGGCTCCACGTCAGAGACTGTGAGTGACAAGGCGTTTGAGGACCGACTGAAGGAGGCAGAAAAATCCATCATGGACCTACTGGACGAGGCTCAGACCAGCAAAGATGTGGACAAAGGCCTGCTGGAGCGCCTGGGGAAACTGAACAGCACACTGACCACTCAGTGGAATCGTTTGCAGAACATCAGGAACACCGTGGACAACACTGGAACCCAAGCCGACAAGGCCCGCAACCGGGTCCGAGACGCCGAGAACCTGATCGGCCTCGCCCGCGAGGAACTGGATAAGGCCAAGGATGCCATCAGCAAACTGGACTTCAAAGCACCCTCCATCAGTGGAGATCCCAACAACATGACCCTTCTGGCAGAGGAGGCTCGCAATCTGGCCGACAAACATAAAATGGACGCGGATCAAATTGAGAAGATCGCAAAAGATGCCAATGACACGTCCACCAAGGCTCTCAACCTGCTGACAAAGACTCTAGATGGCGAGGGCAAGACCAACCAAGACATTGATGAGCTCAACAGGAAGTACAATGAGGCAAAGGACCTGGCCAAGAACCTGGAGAAACAGGCCAACAAGGTGCATGCTGAGGCAGAGGAGGCAGGCGACAAAGCCCTGAAGATCTACGCTAACCTGACAAGCCTGCCACCTTTCAACACCAAATTACTGGAGGACGAAGCGAGCAAGATCAAGAAGGAAGCGTCTGACCTGGACAAGCTGATTgacaagacagagaaagagtaCAACGACTTGAGGGATGATCTGCGAGGGAAGGAGACTGAGGTCCGCAAGCTGCTGGAGAAGGGCAAGACGGAGCAGCAGACTGCCGATCAGTTGCTGGCTCGTGTCGATGCTGCCAAGGCGCTGGCTGAGGAGGCCGCCAAGAAGGGGAGGACCACCTACCAGGAGGCCCAAGACATTCTGGGAAATCTGAGAGACTTTGACAAGCGGGTGAATGACAACAAGACGGCAGCTGAGGACGCCATGAAGAGAATCCCAGAGATCAACGCTACCATCATTGCGGCCAATGAGAAGACCAAGCAGGCTGAGGGGGCACTAGGCAACGCAGCTGCAGATGCCAAGGAGGCCAAGAGCAAGGCAGAGGAGGCAGAAAAGATAGCCAGCGCTGTGCAGAAGGGTTCTGCTAAGACCAAGGCGGATGCAGAGAAGGCCTTTGAGGACACTATGATGCTGGATGGGGAGGTGAACGGCATGATGGACCAGCTGAGTGCAGCCGAGGCAGAGCTGGCCAAGAAGAAAGCTGAGGCCGACCAGGACATGATGATGGCTAGCATGGCATCGGACAATGCGAAGGAAGCGGAGGACAACGCCCGCAAAGCCAAGAGTGCTGTCAGGACTGTTCTCAACACCATCAACGACCTGCTCAAGTCACTGGGCAACATTGACAAGGTGGACCTGAGCAAGTTGGGCTTGATTGAGGGGTCACTGAAGCAGGCCAAGGACAAAATGGCGAACAGCGACCTGGACCGCAAGCTGGCGGAGCTGAATGATGTGGCCAAGAGCCAGGAGGAGATGATCACCGACTACGACAGGCAGATCAGGGAGATCCGGTCTGACATCGCCAACCTCAATGACATCAAGAACACTTTACCTGACGGCTGCTTCAACACCCCATCCCTAGAGCGAccttaaccccctctctctccaccacctgTACCCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCCCCTTCCTCATATCCCGTATGTACCGCTCCTTCCTCATATCTCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCCCCTTCCTCATATCCCGTCTGTACCGCCCCTTCCTCATATCCAGTCTGTACCGCCCCTTCCTCATATCCAGTCTGTACCGCCCCTTCCTCATATCCAGTCTGTACCGCCCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCGTACCGCTCCTTCCTCATATCCCGTCGTACCGCTCCTTCCTCATATCCCGTCTGTACCCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCTTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCTCATATCCCGTCTGTACCGCTCCTTCCTCATATCCCGTCTGTTCCGCTCCTTCCCACGTCTAACACTCGGGCAGAATGCCACCTTTTTACCAaaactttttttctttctttattttttctttgctttgtctttgtttgtcttttttttttacaagagaAGCTAAGTTTCATGGTTTTAAAGAAAGAGAAGAAGCAGCTTTGACATGCAGAAACGTGAAATGAACTAAGGGCAGTCGACAAACATGCATCCATTCTCCTTCggtgcagcaggttaggagaggtGTGGCATACCTCGCTCCCGAGTAATGAAAACCCACATGACTGCACCACCTCCAGACTTCCTACACTTCTACGTGTAGGACCGTTACACCGTCTTGTTTCATCACAACCTAAACCACCCCGACAGAAAACAAGGAGAAATGTCCTCAGCCTTTTCAGATGGGTGCATGTCATATGATAtagcatttgttttatttgatatgATATCTAACAAGTTATCCTTACCCATCATTCTAGACCGAAGGGCATGCTGGGAATGGTTTGTCTGTGAGATATTTTTTAGCTATAGGTATTGTTCAACTTCCAGTACATATGTGCCATCCTTGGTGTTATCAACCATTTGTTTAAAAAACAAGCAGTGAAGGAATTCTCACAAGTTTATACATTTTGTTTGCCTTCATTCGCTTCCAAAGCTACATATATTGCATGGAGAAAGTATTCCTGTTATTATTACACATTTTTACAGTATTCAACTCTACTGCACATTCTGCTCCATACCCACATTAAATAAtcctacagtttactatagaatactacagtactttgtatagaattctgtagtaaagtgtagtgtagtaaactgtagtatactatactacacattgCACtacagcatttcccaaactctgtcctctgTCATTTCCCAAACACCACTGATTCAAATAATTAACTCATCAAGCTTGGATTATTTGAAtcggctgtgtagtgctagggcaaaaatacAAAAATGCACCCCTTGGAGTCTCCAGGACAGAGTTTAGGAAACGCTGCTGTAGTATATAACGATCATTGGCAGTACTTATTATAGAAtcgtgtagtatactatagtaaatattacagtatactatgGACCacaaaaatactacagtaatatctgcaaaaacactgcagtaattactgtagtgtatatatatattacaagaTTAATTTGTGTCTACCCTGCCCATtcccatatcccaatttgtggCACCAATAAGTTACAAGCCTACGTTTGGTATCGTATAGATTATATATATGTGTTCCCTGCAGGTTATAAAAaggagcagaagctctgaactgtCTATTCAGACCTCAGTCCTATCTACCTACAGGTATGGTAAattttattttgtgtatttttccaagtaggtttcctcaaggataacatgtcaaagataataaaacaaaaacattatagtaaatactacagttatTTCCTCAAAAAAccctacagtaaatactacagtccgaaaaaacactacagtaattactataATATATACTAGTTTTTTCTTACTACAGTGTATACTATGAAAAGGAAATACTACAATCATGTCTGcaaaactacagtaaatactacagtattcactgtaTTTTTACACTACATTCACTTTTTTCACTACAGTATTTTTTCACTCCactgaatactacagtaaagtctccAAAAACACTACAgggaatactatagtatttaacgATAGTATACcttagtattttttcatgtgggcatGCATAACTGAAAAGCTGTTAAATGAAACCAGCAAGTGGGTCTTTAAAATGACTCTGATATTTTTGACATTTGAGACAGTCCTGTACCGCCCAGTGAAACAATATGGTTAAATATAATtgtatgtaaaaatatatatatatataattaacaCTACAAATCTTGTTTTTTGTCTGATGTTTTTTCCTCCCTAAGCTGCTGCTTAAAACAGGTGTATTGCAAATCACACATTAATATTTTTTAAGACAAAATTCTACACTATGCAACTTTGTACATTTTGCGTAGCAAGACTTTATCTGATACACTGGTGCTAATAattatttcaaatgttatatttttgtGTGAATGTTTTTTATTATGATATAGAGTGAggaaatattatttgtgtaaatATATGCTTAAATGATTCAGGGCTGGCTGATTGTTAAATCCAAGACCCAGCGGCCATAGGTTATATCGCAAAAAATCAACAAACCTCcacataatatataaatatatatgataAGTTCTGTGGTATAATATGCTTGCTTGTGTACATGGCTCGGTGTTGCCTCAGCTCTGCCATTATTAATTTGTGTTTAATTATCAGTGGGTGGTCACCAATTAATTGATGAATGCTTTTAAAACGAGATCAAAACAATGCTTTTAAAACACCTTTATCCTTGACTGATAACTTCAGGACTGTGTGAGAGATGGCCCTAAAGAAGCCATCGGTCTACATTAAGCCTATCGTTTCATTTTACTGAATTTAAACCGACTCCAAGAAAATAAGCTTGTTCACAAGTTGGTAGTTAACCATTTAGTGTTGTGTCTTCATATGTGGTCAATATTCACATCACTTAGTTCCTAACGAGGGCGTCACGTTTATCGCACACATTACGTTTCAGACAAACACTCTTTTCACACATAATTGTCTCCTCACACGTTCGCTACTCGGTGTCCTCGCATTTCAGTAGAACAGCAGGGATTTTGTTGATGGGTCCAGAACATCAGCCTGCCAGCCGCGATACAGTAAATGAATAGGTTATAACCTGGAAACCACTCATCCTTCCCATTCAACATCTCTCATCCTCAATACACCAATACTCACTCCTTTCCTTAGCCTGCCTCCTATCATGTTATTTGTTGGATAGTTGTTAGCTAACCTTTTACCCACAATTTTATAGATGTGGCAGCGGCTAAAACGATGTACACTGCATTGAACCATCTTCTGCCGTCTCTTAACCCTCCAGGCTACCACACTGCTGTGGAAGAATGTGCAGCACATACTGTTTGATGTATAAAACAGTATTTCTAATTTATAATGTCTcaagtatttgtattattttgttgCAGTAGATGATGATGATATGTATGTGTTGCACAATCTTGTTGTGGTCATTTGGCTATGGAGGGCATGTTCTGTTGTACAATATAACACAAAGGCACCAATTCACTGCAACGTTTAATTTGTGAGGACCTGAGAAAACCCTGTTTGTGACCCACTTGCCTGTAAATCCAATCGTAACAtttgaaataataaaacaaatattacagGAA

Function

NR:

description
laminin subunit gamma-1-like

GO: NA

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589534.2 True 9619 mRNA 0.48 28 22941732 23022726

Neighbor

gene id symbol gene type direction distance location
dhx9 dhx9 coding upstream 7472 22914656 ~ 22934260 (+)
rasal2 NA coding upstream 27774 22831090 ~ 22913958 (+)
ankrd45 ankrd45 coding upstream 111281 22828736 ~ 22830451 (+)
cenpl cenpl coding upstream 121607 22816873 ~ 22820125 (+)
LOC110508746 brinp2 coding upstream 277749 22547186 ~ 22663983 (+)
lamc2 lamc2 coding downstream 2047 23024773 ~ 23042412 (+)
smg7 smg7 coding downstream 34052 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 coding downstream 79768 23102409 ~ 23103987 (+)
LOC110508282 LOC106599615 coding downstream 174289 23197015 ~ 23204478 (+)
LOC100505418 LOC100505418 coding downstream 182181 23204907 ~ 23211267 (+)
G2118342 NA non-coding upstream 149917 22791307 ~ 22791815 (+)
G2118333 NA non-coding upstream 157838 22783689 ~ 22783894 (+)
G2118330 NA non-coding upstream 159881 22781554 ~ 22781851 (+)
G2118128 NA non-coding upstream 271786 22669621 ~ 22669946 (+)
G2118024 NA non-coding upstream 401806 22539655 ~ 22539926 (+)
G2118532 NA non-coding downstream 54953 23077679 ~ 23201786 (+)
G2118550 NA non-coding downstream 91984 23114710 ~ 23117051 (+)
G2118530 NA non-coding downstream 105919 23128645 ~ 23159265 (+)
G2118573 NA non-coding downstream 137276 23160002 ~ 23162200 (+)
G2118577 NA non-coding downstream 145726 23168452 ~ 23169935 (+)
G2116347 NA other upstream 1566654 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 2099729 20840508 ~ 20842019 (+)
G2115369 NA other upstream 2499563 20441733 ~ 20442169 (+)
LOC110508695 LOC106599333 other upstream 3304979 19623468 ~ 19636825 (+)
G2113578 NA other upstream 3865314 19076077 ~ 19076418 (+)
G2118574 NA other downstream 141140 23163866 ~ 23164323 (+)
LOC110508774 LOC106599485 other downstream 1078431 24101070 ~ 24137027 (+)
G2121837 NA other downstream 2697714 25720440 ~ 25721674 (+)

Expression


Co-expression Network