LOC110508762 (LOC106599443)


Basic Information

Item Value
gene id LOC110508762
gene name LOC106599443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23144219 ~ 23154829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589545.2
CTTCGAACACGCCCAACATCTGACATCAAGCACAAGGCGTCGGCTCTTCCAATTCAAGAACAATGCAGCTGAATGGCATGTCGCCTCCAACGGCCAATCAGAGACGTTTATAGTGGAGAGTGGCCGCTTCGACAACACATCCACAAAGGCAAAATTCAGTAAAAATGTATATATCTTAAAAATATGAAAACAAAAATtatttttggtcttcatttaaagttaacagtgtggttaatgCTAGCtctaaaatcagattttaagaagatacattttaaaaataggCACGGTTTATGACTGTGTGGTTGCGTTAACTACTGACGACCCTGCTCACCAAGGAAAAAAAGTCCTGTTTGTGGCTTGCCGAATACCAGATTTTTGTAATGgaataacatgtaaaaaaaagcTTCTGGCTACATGTTATTTCACCCGTCGGATTTGCTTCATGCTGTCTTTCTCGGACGCTGTGTGCACATTGTGCTGGTCTGAAGAGCCCTTTATTTGAAGtcgaTTCAGTCTTGCATGGGTCTGTAAGAGGCAGCATCATGAGTGGGGAGCCAGATGCTTTGGCTGTGGTGAACCAGCTTAGGGATCTTGCTGCAGATCCCATGAACAGAAGAGCCATCGTTCAGGACCAAGGTTGCTTACCGGGACTCATCATTTTTCTGGACCACCCCAACCCCCAGGTTGTCTACTCCGCACTCCTGGCTGTGCGCTACCTCGCAGAATGCCGTCAAAACAAGGAGAAAATGAGGGGAGAGCTTGGGATGATGTTAAGTCTTCAGAATGTCATGCAAAAGACAACCACCCCGGGAGAGACCAAACTGCTGGCCTCAGAAATCTATGAACTCCTCCAGGCCTCTAACAGTGAGGATGCATACAAGTCCAAGGAGCCCTCCTGCAGACGTAAGCCCCAGTTCTTCCTGGGCTCCACCAACAAGCAGGCCAAAACAGTGGTCCTCCACATAGATGGCCTGGATGACTCTAGCCGGAGGAGCCTTTGTGAAGAGGCCCTATTGAAGATCCGAGGTGTCATCAGCTTCACATTCCAGATGGCCGTTAAGAGGTGTATCATCAGAATCCGCTCAGACCTGAAGGCAGAGGCTCTGGGTTCTGCCATCGCATCAACTGAAGTAATGAAAGCTCAACAGGTGGTCAGGGGAGAGGATGGAAATGAGGTAATCATCCCATTCCCAGAGGATGGTTCGGTAGCAGTGGAGCAGAATGTGAATCTTCCAGACTATCTTCCAGAGGAGGAGAGCCCGTCCCAGGAGCCAGACAAGGCTGTGACCAGCGTGGGCACAGGGCAGGACGGAGCAGGCTGGCTAGGCACTGCTGCTAACTTTCTGTCCCGCTCTTTCTACTGGTGACTCCCAGACCACTTACACCTCTTCAGACAGAATCAGGCTCCCAGCTGCCAAAGAGCTGGACTGCCAAAGGCAATGTGTAACAACAAACGATTCCAACGGTATGCagtacacacatgcacgcacccaCAATCTTACACACACTCCCACCTGGCACCATACAGAATCACCAAGCCATTGAGGGAGAGGACCGGCTTCCGGAATGGATTCTTATTTCTTATCTTTTGGGTTTTGATTGAGAGCTAGACTATTCTTTCTGCAAATGTAAATGGGTCCATGTATTTGAAAACCAAAATGTCTTATTGTGAGGAGCTTTATTGTGGCACCATTTTAATAGGAATTGATCCATCAGAAACGTTGCCACAAAATGAAGTTCCTGCAGTTAGAATGATTTGAATGATCTGAAATCATTCTTGGTCTTTTTGACCGACCTTTGAACAATAACAGACCTCCTTCCCTATTTTCTCAATGGGTATTGTAGAATATGCAGTAATCAGCATGTGTCCAGTTATGGTGCCTTTTGTTTCATTATGTTTACATGGATACCCTTGCATGACTGACTGTCTGCTTTAGTTCTGAAGCCTGTAAGGCTCCTTACTTTAACATACCAAAGGTTACTGATGCAGACACTGTATCAACTCGTGTGGGTACTCTTTAAATTCCAATGCCAACTTAAATCATTCATGAAATATATGTGGAGGATTGTGCAATGTTTTAAAGGAGTGTGTGGCTGGTTGGAAAAGAGATGTTTTATCTACAGTAAAAGCATGAATATTTTGCACAGTCTGAACATTGTGCTATTCTCGAACAATGTGCTGTCATGCTTTATTGGCTTGGTATGACTCATTACAGAACAACATTAGGATATATTTCCTAAGGAAGAGGATTGTTCCTCTTTAAGGTACAGCCTCTGACATTTTTTGGGGAACAACATTCCTTTCCCCAATGTCTTGTATGATTTAGCGCATAGTTAAAAATAAGACGAGGCTAAAcataatctctcgtggacagactacATAAACATTAATGGTTGAGCATTTGACCAAATTACGTAAGATTTTAGTTCTGGGCATACCGAGTTTAGGCTAAAACTAACATTATTTTTCTCTAAATATATGTAGATGGAAATACACATTGTGTTAGATTTTAATTGGAAATGCATTGGCCAGCAGTGTCCTTAAACCTGTGGTTAAACTCATGTGGGTGCTGCCTTCTGTCAGGGTCATCTGTAAGTGTTGAACAGTGAATGTTTTGGATTGtttggtcaatataatggatcaCTTGCCCATTACCCAGCTTCTGAAATGGTTATGTTTTCAGTGCATGTTACAGTGTATGAATGGGAAATGTTTCTGCTGAGCTTATTACTGTTCAAAGTAAATCTCCACATAACAATCCCTTTTTAAAGTTCAGCCATTGTCTCAAGGAAAAGTTCCGTTTCTGCCAAGTGTttcttgaaagtgttattttctGTCTGtggagggggaaaaaataattgTATAGAATTGTCTAGAATTGTACTGTTGTCCTCTCCTTGTATTTGTCTGTGTTGCTTGCATAAACATGTCCTATAGACTCTCCCACCTCGTGCAATCACACCTGACTAGATTGTGGCCATCATGCCAGGGCAGAATGCATCCTATTTGCAAACACTGTATAGTTGTTCACACTCAATCAATGTGCATTGTTTACCAACAGTCATTCACTAGAAATGTGTTAATATCTTTGTATTGTTATTGATTTGCTTTTTCCCCCCCAGAAACCATTTATTAGATCAACTAACATTAATCAGGTCCGCCTTTTTGTTTGCCAGCTTTATTCGACTCAGGGGAAAATTTCTATCATATAATCCACGGTCTAATCACTCACGTATTACAACCTGTTTGAGTTGGTTCTTTCCACTGATAATGTATGAACACCAATCACAGAGgaatgttctgtgtgtatgtatgctgcCTGTCAGTTTGTCTGTAGTGTTATGGGCCATTGTGAGTGAGCTGTATGTTCCTAAGAGTTATATAAAAGAATATTAAAAAACAATGTTATTATATGAAATGTCCAATTGTTAATTTTATGGATGCTGATGGGATAGGGTACTGCCTTGAATTGAGGACATGACAGTTTGTTCAACATGACAATTAAAAATGTACACAATA

Function

NR:

description
armadillo repeat-containing protein 1-like

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17306 ARMC1; armadillo repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589545.2 True 3520 mRNA 0.42 7 23144219 23154829

Neighbor

gene id symbol gene type direction distance location
LOC110508760 LOC106599438 coding downstream 25896 23104071 ~ 23118323 (-)
nmnat2 nmnat2 coding downstream 88873 23042538 ~ 23055346 (-)
LOC110508754 shcbp1l coding downstream 204654 22934260 ~ 22939565 (-)
LOC110508750 LOC106569069 coding downstream 315578 22822072 ~ 22828641 (-)
dars2 dars2 coding downstream 327476 22795639 ~ 22816743 (-)
LOC110508763 LOC106599445 coding upstream 5327 23160156 ~ 23190193 (-)
LOC110508765 crf1 coding upstream 56009 23210838 ~ 23212507 (-)
LOC110508766 LOC106599449 coding upstream 91838 23246667 ~ 23253906 (-)
LOC110508767 LOC106599451 coding upstream 131677 23286506 ~ 23314443 (-)
LOC110508185 LOC106569033 coding upstream 162746 23317575 ~ 23353162 (-)
G2119398 lamc2 non-coding downstream 102892 23036810 ~ 23041327 (-)
G2119395 NA non-coding downstream 105125 23033771 ~ 23039094 (-)
G2119394 NA non-coding downstream 105808 23033230 ~ 23038411 (-)
G2119393 NA non-coding downstream 105970 23033053 ~ 23038249 (-)
G2119237 NA non-coding downstream 236584 22905184 ~ 22907635 (-)
G2119699 NA non-coding upstream 457193 23612022 ~ 23613195 (-)
G2119766 NA non-coding upstream 573284 23728113 ~ 23732967 (-)
G2119795 NA non-coding upstream 626124 23780953 ~ 23781185 (-)
G2119796 NA non-coding upstream 627723 23782552 ~ 23782983 (-)
G2118200 brinp2 other downstream 536413 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 1195961 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 1267569 21873216 ~ 21876709 (-)
G2117313 NA other downstream 1273166 21870685 ~ 21871053 (-)
G2115838 NA other downstream 2284689 20859140 ~ 20859530 (-)
LOC110508783 LOC106599501 other upstream 1510045 24664869 ~ 24677152 (-)
G2120836 NA other upstream 1575845 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 1989233 25144062 ~ 25148520 (-)
G2121457 NA other upstream 2043419 25198248 ~ 25274626 (-)

Expression


Co-expression Network