LOC110508282 (LOC106599615)


Basic Information

Item Value
gene id LOC110508282
gene name LOC106599615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23197015 ~ 23204478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588705.2
ATGTCTGAACCAAGGCAGCGCTCTCTGTCCACCTCTGGAGAGTCTCTGTATCAAGTGCTTGGGCTAGAAAAAGGCTGTACCCATGATGACATCAAGAAGTCCTACAGAAAATTAGCTCTGAGGTACCACCCGGACAAGAACCCTGACAACCCAGAGACAGCAGAGAAATTCAAGGAGCTCAACAGCGCTAATTCCATTCTGTCAGACATCACCAAGAGAAACATTTATGACAGCTACGGCTCCCTTGGCCTTTATGTGGCCCAGCAGTTTGGAGAGGAGAATGTCAACACCTACTTCATGCTGTCTACCTGGTGGGCTAAGGGTCTCTTTGCCTTGTGTGGCGTGATAACGgggtgctactgctgctgctgcctgtgctGCTGCTGTAACTGCTGCTGTGGAAAGTTGAAGCCCATGCACCCCGGAGAGGGAACAGACAGCTATGTCTCCCCTGAAGACCTGGAGGAGGAGATCCGCCACGACAAGGAGACTGATGTGGACACTCCGGTTGTGCACCAGCCAACTAATGCCAGTGAAAAGACACAGTTGATTGGGGACGGCCACCGAAGTTACACCTGAACCTGGACATCTACAAACCGTAGAGAGGCACTAGACGACATAAACACTACACAGTCCATTGCAATGTGAATGGCTGTTCCCACACTCTAACGTCATTACATTCTCTGTAAATAAGTGcttttggttgttgttgttttttcaaatCTTGATTTCTGTTTTCATTGGAGGTAGTTGATGTCGTTGTTCTCCTGCATACTAAATCCATCATCCCCTTTCACTTACCTAAACACTTTGAAGTGCATTGGCTTCCCTTGTCACATAGTACAAATAGCTCAGTGTGTAAATATTACAGTTTGTGTATGTATAAAAATAGAACAAAAGTATTTTGTTGAAAATAAATGTATGATTTTATCTGTCTATACAGTCAACATGAAATGGTATCTGATGTATTGGTACGAGTGTATATATATAGGGTATATTTGTTTTAATGCTGTAGGGTGATGACAGGTTCAGAATCAATGTGTGTCTGGGGCATTGCTTACAGTATCAGCATAGCGTAATGTATTCAAGGTCACATACTGGTATTTGCTTTTAAAATTAGGTGACTAATGTTTCACAATAGATTATGTTTGTCATTGGGATATGGACTGGTGTCTTTTGACATTGATCGCAATCATTTCA

Function

NR:

description
dnaJ homolog subfamily C member 5-like

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588705.2 True 1200 mRNA 0.44 4 23197015 23204478

Neighbor

gene id symbol gene type direction distance location
LOC110508761 LOC106599440 coding upstream 93028 23102409 ~ 23103987 (+)
smg7 smg7 coding upstream 109194 23056778 ~ 23087821 (+)
lamc2 lamc2 coding upstream 154603 23024773 ~ 23042412 (+)
lamc1 LOC106599430 coding upstream 174289 22941732 ~ 23022726 (+)
dhx9 dhx9 coding upstream 262755 22914656 ~ 22934260 (+)
LOC100505418 LOC100505418 coding downstream 429 23204907 ~ 23211267 (+)
LOC110508768 LOC106599453 coding downstream 58392 23262870 ~ 23286417 (+)
zmynd11 zmy11 coding downstream 547829 23752307 ~ 23776713 (+)
LOC110508774 LOC106599485 coding downstream 896592 24101070 ~ 24137027 (+)
LOC110508777 k6pp coding downstream 986812 24191290 ~ 24230123 (+)
G2118577 NA non-coding upstream 27080 23168452 ~ 23169935 (+)
G2118573 NA non-coding upstream 34815 23160002 ~ 23162200 (+)
G2118530 NA non-coding upstream 37750 23128645 ~ 23159265 (+)
G2118550 NA non-coding upstream 79964 23114710 ~ 23117051 (+)
G2118342 NA non-coding upstream 405200 22791307 ~ 22791815 (+)
G2118658 NA non-coding downstream 97290 23301768 ~ 23355823 (+)
G2118712 NA non-coding downstream 231985 23436463 ~ 23457077 (+)
G2118881 NA non-coding downstream 448479 23652957 ~ 23653169 (+)
G2118942 NA non-coding downstream 539878 23744356 ~ 23744578 (+)
G2118953 NA non-coding downstream 559134 23763612 ~ 23764826 (+)
G2118574 NA other upstream 32692 23163866 ~ 23164323 (+)
G2116347 NA other upstream 1821937 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 2355012 20840508 ~ 20842019 (+)
G2121837 NA other downstream 2515962 25720440 ~ 25721674 (+)
G2122177 NA other downstream 3153060 26357538 ~ 26374560 (+)
LOC110508797 LOC106599544 other downstream 3475335 26679791 ~ 26688506 (+)
G2123101 NA other downstream 3737722 26942200 ~ 26945187 (+)

Expression


Co-expression Network