LOC100505418 (LOC100505418)


Basic Information

Item Value
gene id LOC100505418
gene name LOC100505418
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23204907 ~ 23211267 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588592.2
CTCAGTGGATTGCCAGCTAGGGAGCAATGCGATCCGTTCGAAGGAGCTTTGAGGACAGCAACGAGCGCCTAAGCAGGCCCAGTGACTCTGCATTGTTCTAAAGGAGTAGACATCTTTAATCTTTGCCAAGTCAGTTCTTTAGGGATTGAGGAACCGTTGGGGGACTGTTTGTTGGTATCCCTAAAGACAGCAGTAGTGGTTTTGTTTTTCCACTGTGCAATGAATATATCTCTGGGGTATTCACATTCCACAAAGCAAGACAGCAACATGGACAGCTTGGAGAAACAGCTCATTTGCCCCATCTGTTTGGAGATGTTTACCAAACCGGTGGTGATTCTCCCTTGTCAACACAACCTTTGTCGAAAATGTGCCCAAGATATTTTCCAGGCCTCAAACCCTTATCTATCGACCAGAGGAACCACGGTATCTTCAGGGGGACGTTTCCGCTGCCCGTCCTGCAGACATGAGGTGGTCCTGGACAGACATGGAGTCTATGGCCTGCAGAGGAACCTGCTGGTGGAGAATATCATTGACATGTACAAACAAGAACAGGAGTCCTCAAGcaagcctgagcctgagcctgccaAGTGTGACCAGCCCATGTGTGAGGAGCATGAGGGTGAGAAGATCAACATCTACTGTGTGACGTGTGGTGTGCCCACCTGCTCTCTCTGCAAGGTGTTCGGAGCCCACAAAGACTGTGATGTGGCCCCACTCAACACTGTATTCAATAAGCAAAAGactgAGTTGACTGACTGTATAGCCATGCTAGTGGGGAACAACGACAGGATTCAAGGCATCATGAGTCAACTGGATGAGACCTGTAAGACAGTTGAGGAGAATGGCAGGAGGCAGAAATCCAAAGTGTGTGAAAGTTTCGATCACCTTTATGCCGTCCTGGAGGAGCGGAAAGGAGACATGACCCTGAAGATCAACGCAGAGCAACAGGAGAAACTGGACTACATAAACGGCCTCATGAGGAAGTATAGAGAGCACCTGGAGAACATGGCAAAGATCGTGGAGACAGGGATACAGACAATGGAGGAGTCAGAGATGGCTACTTTCCTGCAGACTGCAAAGCCTCTTCTACAAAAGCTCATTGCAGGCACTAAcatctcccacctggacaaagtgGAGCGTGGCTATGACAACATGGATCACTACACAGCTAACTttgagcgagagaggagggtaCTGCTCACTATAGACTTTGTGAAAGATGTTGAAGATGATGAAGAATTTGAAGATGGAGAAGAGGAAGTAGAATTGAGGCGGATGACAGGGGCGACCCGTACAGATGTCTCCCCCTCTGCTGCAGGGCCCTCTGTCGTTAAGGCCAACCCTCCACAGCCCCAGCAGCAGACAgcacccccaccccttcctcaGAGACCTATTGAGACCCTAGGTGTCATGGCTACCCTGGCCAACCCACAGGGCCCCGTCCGTGCCACAACCCCAGTACAATTCCCatccctaaccccaacaccaacTGCCACCGGACAGGCCAGCCCAGTCCACTTCCCAACCACAACCCCTGTTCAGTTCCCAAACACAAATCTGGCTAACTTCCCATCAGCAGAGCCACCGACACAGATGACTTCTGATGCGGCATCAAGTCAGCAAAACACAGATGACAAAGATGGACCCAAACACGTCTTCTCCTTTTCTTGGCTGAACAACCAGAAGTAGATGTTCATTTTACCTCAAGACATTGTTGTAATACTAGGTATTGTTTTGGTTGAGTCAGCATCCCGCTGCAGGCACGGTTTAAATAATTACTATGTTACCGTTATATAACTGTAATTTCTCTGTAAATCCTCTCTAGCATTTCTATACTACCGTAAAAACAAATGTCATTGGGCAGATTTCTGGCTTGAGAAAGCCGTGCGTAATTTGGCACACATTTTGGCAATAGATTTACGCGTGAGTCAGAAAAACGTCTCAATGTATTAAAACACTCAATTTAGTCTACACAGCAAGCAATGAATATAACTTTGGAAACTTTTTTTATTACAAATATAAATATCAGACATTCTCTTGCACAACAAATATGATTGGTTGCTGATAGTCATATGATTGGCCTATTTTACTATCAAACTTGAAGCAATTGTACAATGAGAGGGAattccagagagagaggatgaatgtTTGGACAATATATACAAAATACGTTATGCTTGAATATAAGTTAAAGAACATTAAAGGATatttgtgttcagca
>NM_001197214.1
AACGAGCGCCTAAGCAGGCCCAGTGACTCTGCATTGTTCTAAAGGAGTAGACATCTTTAATCTTTGCCAAGTCAGTTCTTTAGGGATTGAGGAACCGTTGGGGGACTGTTTGTTGGTATCCCTAAAGACAGCAGTAGTGGTTTTGTTTTTCCACTGTGCAATGAATATATCTCTGGGGTATTCACATTCCACAAAGCAAGACAGCAACATGGACAGCTTGGAGAAACAGCTCATTTGCCCCATCTGTTTGGAGATGTTTACCAAACCGGTGGTGATTCTCCCTTGTCAACACAACCTTTGTCGAAAATGTGCCCAAGATATTTTCCAGGCCTCAAACCCTTATCTATCGACCAGAGGAACCACGGTATCTTCAGGGGGACGTTTCCGCTGCCCGTCCTGCAGACATGAGGTGGTCCTGGACAGACATGGAGTCTATGGCCTGCAGAGGAACCTGCTGGTGGAGAATATCATTGACATGTACAAACAAGAACAGGAGTCCTCAAGCAGcaagcctgagcctgagcctgccaAGTGTGACCAGCCCATGTGTGAGGAGCATGAGGGTGAGAAGATCAACATCTACTGTGTGACGTGTGGTGTGCCCACCTGCTCTCTCTGCAAGGTGTTCGGAGCCCACAAAGACTGTGATGTGGCCCCACTCAACACTGTATTCAATAAGCAAAAGactgAGTTGACTGACTGTATAGCCATGCTAGTGGGGAACAACGACAGGATTCAAGGCATCATGAGTCAACTGGATGAGACCTGTAAGACAGTTGAGGAGAATGGCAGGAGGCAGAAATCCAAAGTGTGTGAAAGTTTCGATCACCTTTATGCCGTCCTGGAGGAGCGGAAAGGAGACATGACCCTGAAGATCAACGCAGAGCAACAGGAGAAACTGGACTACATAAACGGCCTCATGAGGAAGTATAGAGAGCACCTGGAGAACATGGCAAAGATCGTGGAGACAGGGATACAGACAATGGAGGAGTCAGAGATGGCTACTTTCCTGCAGACTGCAAAGCCTCTTCTACAAAAGCTCATTGCAGGCACTAAcatctcccacctggacaaagtgGAGCGTGGCTATGACAACATGGATCACTACACAGCTAACTttgagcgagagaggagggtaCTGCTCACTATAGACTTTGTGAAAGATGTTGAAGATGATGAAGAATTTGAAGATGGAGAAGAGGAAGTAGAATTGAGGCGGATGACAGGGGCGACCCGTACAGATGTCTCCCCCTCTGCTGCAGGGCCCTCTGTCGTTAAGGCCAACCCTCCACAGCCCCAGCAGCAGACAgcacccccaccccttcctcaGAGACCTATTGAGACCCTAGGTGTCATGGCTACCCTGGCCAACCCACAGGGCCCCGTCCGTGCCACAACCCCAGTACAATTCCCatccctaaccccaacaccaacTGCCACCGGACAGGCCAGCCCAGTCCACTTCCCAACCACAACCCCTGTTCAGTTCCCAAACACAAATCTGGCTAACTTCCCATCAGCAGAGCCACCGACACAGATGACTTCTGATGCGGCATCAAGTCAGCAAAACACAGATGACAAAGATGGACCCAAACACGTCTTCTCCTTTTCTTGGCTGAACAACCAGAAGTAGATGTTCATTTTACCTCAAGACATTGTTGTAATACTAGGTATTGTTTTGGTTGAGTCAGCATCCCGCTGCAGGCACGGTTTAAATAATTACTATGTTACCGTTATATAACTGTAATTTCTCTGTAAATCCTCTCTAGCATTTCTATACTACCGTAAAAACAAATGTCATTGGGCAGATTTCTGGCTTGAGAAAGCCGTGCGTAATTTGGCACACATTTTGGCAATAGATTTACGCGTGAGTCAGAAAAACGTCTCAATGTATTAAAACACTCAATTTAGTCTACACAGCAAGCAATGAATATAACTTTGGAAACTTTTTTTATTACAAATATAAATATCAGACATTCTCTTGCACAACAAATATGATTGGTTGCTGATAGTCATATGATTGGCCTATTTTACTATCAAACTTGAAGCAATTGTACAATGAGAGGGAattccagagagagaggatgaatgtTTGGACAATATATACAAAATACGTTATGCTTGAATATAAGTTAAAGAACATTAAAGGATatttgtgttcagca

Function

NR:

description
muscle RING finger 2

GO: NA

KEGG:

id description
K10654 TRIM55, MURF2; tripartite motif-containing protein 55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588592.2 False 2221 mRNA 0.47 9 23204907 23211267
NM_001197214.1 True 2165 mRNA 0.46 9 23204966 23211267

Neighbor

gene id symbol gene type direction distance location
LOC110508282 LOC106599615 coding upstream 429 23197015 ~ 23204478 (+)
LOC110508761 LOC106599440 coding upstream 100920 23102409 ~ 23103987 (+)
smg7 smg7 coding upstream 117086 23056778 ~ 23087821 (+)
lamc2 lamc2 coding upstream 162495 23024773 ~ 23042412 (+)
lamc1 LOC106599430 coding upstream 182181 22941732 ~ 23022726 (+)
LOC110508768 LOC106599453 coding downstream 51603 23262870 ~ 23286417 (+)
zmynd11 zmy11 coding downstream 541040 23752307 ~ 23776713 (+)
LOC110508774 LOC106599485 coding downstream 889803 24101070 ~ 24137027 (+)
LOC110508777 k6pp coding downstream 980023 24191290 ~ 24230123 (+)
LOC110508779 LOC106599491 coding downstream 1398212 24609479 ~ 24611957 (+)
G2118532 NA non-coding upstream 3121 23077679 ~ 23201786 (+)
G2118577 NA non-coding upstream 34972 23168452 ~ 23169935 (+)
G2118573 NA non-coding upstream 42707 23160002 ~ 23162200 (+)
G2118530 NA non-coding upstream 45642 23128645 ~ 23159265 (+)
G2118550 NA non-coding upstream 87856 23114710 ~ 23117051 (+)
G2118658 NA non-coding downstream 90501 23301768 ~ 23355823 (+)
G2118712 NA non-coding downstream 225196 23436463 ~ 23457077 (+)
G2118881 NA non-coding downstream 441690 23652957 ~ 23653169 (+)
G2118942 NA non-coding downstream 533089 23744356 ~ 23744578 (+)
G2118953 NA non-coding downstream 552345 23763612 ~ 23764826 (+)
G2118574 NA other upstream 40584 23163866 ~ 23164323 (+)
G2116347 NA other upstream 1829829 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 2362904 20840508 ~ 20842019 (+)
G2121837 NA other downstream 2509173 25720440 ~ 25721674 (+)
G2122177 NA other downstream 3146271 26357538 ~ 26374560 (+)
LOC110508797 LOC106599544 other downstream 3468546 26679791 ~ 26688506 (+)
G2123101 NA other downstream 3730933 26942200 ~ 26945187 (+)

Expression

LOC100505418(LOC100505418) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC100505418(LOC100505418) Expression in each Bioproject

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LOC100505418(LOC100505418) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network