LOC110508766 (LOC106599449)


Basic Information

Item Value
gene id LOC110508766
gene name LOC106599449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23246667 ~ 23253906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589552.2
AACTAGGTTTCGCAACAGAAAAAAACAACCGCTTCCGTGTTGTTATTCTGGCATATATCTAGCTTGTAATACGTGAGACAAAGCGCAATTGCTAGCCAGTTAATTTGGAATTTAACCATAATGGTTTTATAAGATCAATACATAGTGTAGTTTTATTCGCCAGAATGTCGTTGCTACAAAGCTCAAAGAAAAAGGACAAGCGTATTTTGTCCGGTACCTGCCCAGACCCGAAATGCCAGGCGAGGCTATTCTTCCCTGCTTACGGCTCGATCAGTATTGAATGCACTGAATGTGGCCAACGCCACGAACAGAATAATCTTTTAAACGTGGAAGAAGTAACTGATCCAGACGTTGTGCTGCACAATTTGTTAAGAAATGCCCTACTCGGTGTCACTGGAGCCCCAAAGAAGGGAACCGAGCTGGTGAAAGTGATGGGGCTTTCCAACTACCATTGCAAGCTCCTCTCTCCCATTCTCACAAGGTATGGAATGGATAAGCAGACGGGAAAAGCGAAACTGCTGAGGGAAATGAATCAAGGAGAGATGTTCGACTGCTCACTTCTAGGTGATCGGGCGTTTCTAATCGAACATGAGCATGTATCTACAGTTGGCTATGGCAAGGACAGATCCGGGAGCCTGATATACCTCCACGACACTTTGGAGGAGATTAAGAAGGCTAACAGCAACAAAGAATGCATAATACCTGTTCATGTGGATGGAGATGGACATTGCCTTGTTCATGCTGTGTCCAGGGCCCTGGTAGGCAGAGAACTGTTCTGGCATGCCTTAAGAGAGAATTTGAAACAGAATTTCAAGCAAAATCTGGATCGCTACAAGGCACTCTTTCAGGATTTTATTGATGCAGCTGAATGGGAGGACATCATCAACGAATGTGACCCCCTTTTTATCCCACCGGAGGGTGTGCCACTGGGACTTCGAAACATTCACATATTTGGCTTGGCTAATGTGCTGCACCGCCCCATAATCTTGTTAGATTCACTGAGTGGAATGAGGAGCTCTGGGGATTACTCTGCAACTTTTCTCCCTGGGCTTGTACCGGAAGAGCAGTGCAAGGGAAAAGATGGGAAGTTCAACAAGCCTATATGTATCGCCTGGAGTAGCTCTGGGCGTAACCACTACATCCCTCTTGTCGGAATAAAAAACACACTCCTCCCCAAGCTGCCGCCCAGGCTACTCCCCAAAGCTTGGGGGGTCCCACAGGAGCTCATCAAGAAGTACATTAATTTGGAACAAGACGGGAGCTGCGTCATCGCGGGAGACCGAAGCTTACAAGACAAGTATGTGATGAGACTGGTCAATGCCATGGAGGAGATCTTCATGGAGAAGCATGGAATCCACCCCTCCCTGGTGGCAGACGTGCATCAGTACGTTTACAGGCGGACTGGTATGATCGGCGTCCAACCCGAAGAGGTGACGGAGGCTGCCAGGAAATCAGTCATGGAAAACCGGCTTCATCGCTGTCTGATCTGCAATGCACTCTCTGAGCTTCATGTTCTACCTGAGTGGCTGGCTCCAGGTGGTAAGCTCTACAACCTGGCTAAATCCACCCACGGGCAGCTCAGACCCGACAAGAACTACAGCTTTCCGTTGAACAATGTGGTCTGCTCTTACGACCCAGAGAAAGACATCCTCATTCCTGACTACAAACTAAGCACCTTGAACACCTGCAACTGGTGCCACGGCACCTCAGTGCGCCACATCCATGGCAACGGCTCTGTGGTGTACTTAGATGGAGACAGAACCAACACCCGCTCCCAGGGGGGAAAGTGCGGCTGCGGCTTCAAGCACTACTGGGAGGGAAAGGAGTATGACAATCTGCCAGAGGCTTTCCCCATCACTCTGGAGTGGGGTGGGCGTGTCGTGCGGGAGACAGTGTACTGGTTCCAGTATGAGGTTGAGGTGACCCTGAACAGCAACGTCTATGATGTTGCCATGAAACTGgttaccaagcatttccctggGGAGTTTGGGAGTGAGCTCCTAGTGCAGAAAGTGGTGAACACCATTTTGCATCACACTGCCAAGAAGAACCCAGATGAGTATAACCCAGTCTCCATTGACGGTGCGCATGCTCAGAGACTCACAGACGTGGTGGAAATCCAGCAGGCCGTTGACACACAGCCACCGACTAAGATCATACTAACTGGGCAGAAATCAAAGACCATTCACAAAGAGGAGCTGACCATGAGTAAAGCAGAGCGGAGCCTTCAGCAGAGCATCAGCGAACAGGCCCTAGTGACCCAGAAAAGGAGGACAGATCGACTGAAGCAGGAGCAGAAGGGAGTCCAGGGACATGGGCGGCCGTCCTCTCCGAGTGCTACTCAGGAACCTTCCTCATCCGCTCCAGCCACACCCACCAAATCTTCCTTCTCTCCCACTTCCATTAAGGAGAAGAAGATCCGTGTCACCACTAGCGACGGGCGGCAGGCCATGCTCACTCTACAGGCTCAAACCACCTTTTCTGAGCTCCAGAGGAGCATTGCGAACGAGTTCATTGTGTCTCCAGCCCAGCAATGTATTCGACATGGGTTTCCCCCCAAAGAACTTTTACCTCccaaggatggagaggagaatgAGCCTGTGGCTCTCCAACATGGGGACAGGGTGACTGTGGAGATCCTGAGAGGTCCAGAGGATCACAAGGTTTCCGCCCCAAGTGCCTCCAGTTCCCATTCATCCCTGCATTCCCTCCACTCTGTGAAGAGTGATGATACAGTGACTTCCAGCAGAATGAATACTAGCAGAGAGCTACAGGAGAACATTGACCTTGAgatgtcctccctctgtctcctagCAACCTTAATGGGAGAAGATGTCTGGTCATATGCAAAAAAACTGCCTCACTTATTCCAGCAAGGTGGAGTTTTCTTCAACATTGTGAAGAAAGATATGGGCCTGATGGATGGCAAGCACTGCACCCTCCCACACTTGACTGGAAAGACGTTTGTGTACAACGCAGCAGAGGAGTGTCTGGAGCTGTGTGTGGATGCAGCGGGACACTTCCCCGTGGGCCCTGACGTGGAGGACCTCGTCAAGGAGGCCCTGGTGCAGCTCCGCTCTGAGGCTGCCTCCAGGAGTCGGGAGGGAAGCCCCTCTCACAGCCTGCTGAGGCTCGGAAGTGGAGGTGTGGTGCGCAAGAAGGAGCAGCTCCAGAGTGTCAACGCCTTCCAAGGTAAGGGCCACTCCCTGGGCAGCGCCCCGGGCGGCTTCTCCCCTGAACACAGGCCCATCACCCGCCAGCACAGCAGCGGGGTGGACCTGAGCGCCAGCGTCTCAAAGGGACCTGACCTCTCTGACATCTCAGAAGATGCAACCAAGGAGCTGGTGCGCATGGCTCCTGGTTTCGTCACCATGAAAGACAGCCGACACCTAGACCCTAGTATGATTGAAGAACAGAGGAAAAAACTACAGGAGATGGTCTCATCCATCCAAGCCTCCATGGACAGGCACCTGAGGGAGCAGAGCAATGCAGGGGCAGGCACTGGGGGCCCTGCAGAGAGGACAAGTGGGGCTAAGATGAGTGCTTCCCAATCTACCCCAGGGATAGGTGAACAGGAAGCCTCTTCTATGGACGTATCTACTGCTGGTGCTCATGGCACACCAGTGAAGGCAGGGAACAAGCCTGATGGAAAGGATGCAGGGTCAGAGGAGCTGGAGGAAATGGATAGCCAGGATGCAGAGCATACCAACGCCCTGGAGCCGATGGATCATTCCTGATGGGAAAAAGGCCCAGCCCTATAGTTATCTCAGTCATGATCAGTCACACCTCTGTCTGGTTGACATTTAGTATGTGAATGCTTCAGGTTGTATCAAAGCTTTGGTATTCATTGTGTTTTGTTGTCTTTACTGCATGATTGCCAGAGGTTGACCGTTACTGCCTTTGGTGACAGACTAATGTTATTATACAGAAACATGCACCAAGCTCCAAGGAGCGAAGCTGGTTCTCATGCTTGAAATGCATTCCTGTAGATGCCCCCCATGTCTTAAGACAAGAGGTAGTAGAACAGCTTGAGCTGATGAGATCCCATCCCACGCCAGTATTGTAATGTCCGCAAACATCTGCTTCAGCAAAGTGCACACTGTAAATGTAACGAGTACCATCATCACATTTTCTGATTTACCAAAATATTTGCTATAAACAACAGTAACATTTTCCAAATgtagttttttttcttttcttgaaCTTTGCTCTCCATGTGAATGTTTGCTGTCTTAATTCCTGAAGGAAGGAGTCACATGCCCTTATGATAAGCATATACATCGACTGATGTTTGTTGTCGGAAAACCCTGTgatctttttttgtttgtatttggGCCATTTTATAAGAATTGAAAGATTCTGTTTAAAATGATCATTTAAATGTGAGTGCCATTTGAAAGAAAGTGTAGCACTGTTCTGAATATAACCAATTGATTGGTGGAATTTAGAGATTGACATTGAAGTGTGCACTGATTGGGGAAAATGCCTGTTGATTCTTTTGGGTTCAAGGCTACTTACTGATGTTTGAAGAGTAATTTATGTTACTTTTGAGATTTCTCATAAAACCCAAACGAGTGGCCCAAGTTAAGTGTGCTGCGAAAATGCTGAACTACTTGATGTGGTGCTGTATTCTGTTGGAAGGGCCGGCATAACATACTACACACACCTGGGAGTATATTCCATTACTTGTATGCAATTTCCTTTAGTGAAAGATGGAATGCAGTGcaggattattattttttgaaatACTTTAGAAAGACTTTTGTGTAAGACTTGATTTGTGAATTTTCCAGGTTTACAGATTATCTTTTTAGGAATGATAAATCAATTCAAGAATAGCAGATAATTATTTTTCCATGATCTGCCTgcagtttttgttgttttgtaaacaTGCAATGCTGGCATTTTATTATTCAATCTAATAAATGTATGTTTGCACTTGAATGTTGTTATGCAGGGGTGTGTTGAACCCTGTAGGCTCCCTTTAGTGTTCTTACCATTCATTAGGATATAAACTTGGGATGaaccaaccatagaaatataGTTATTCATTCTAATTTAATGGAAACCACAATCAGTTGGTATTACTAAGAATTGTGATGTATGTCTAGTTACTTTATGTCTTCAGCTCTAGGGATGTTTTTAAGTGCTGTGAACATTTATGTTGCCGATTTGTGACATGAGATGTCTGATCTTTTGGTGCAGAATGTGATGAAATCCTTGAAAGAGATTTCATGGAGGTTGTACATTTTGATATCTCATGAACAAAGTACTACATCTCTCAGTGGTGTGAAGTATATTTCCAATTGGTTGTTCAGCCAATCCAGTTGATTGTAAACTTATAGACAAACCGTGTAGTACCATGTTGCATTCAGATCAGTTTTGTGGCATTCAATTCCTCTCGCAACATTATAAAATGTAacttttggtttgtttgttggaATTTCAACCAAAAACCGAGTTGGGGTGTTTTATAGGCCCTCACATTGGAAGGCAGAGGCTTCACTGTTAACTAATTTAAGTGGCCATTGAGATAAAGGCATTATGGGCCACATTGAGTTTACACTTTTGTTGCCAACCCAGATTTTGGAGTATTCCAAATCACCTTGTTGTTCTAGAATGACATGGTAACTTTGGATGCTGCCATTATCAGCTTATGGCCTTATATCCTTGAGTCTTACTGAGTCTTGGCCTGACTTCTGGACAAGGTTTCTTATTATGGCAAAAAGCAGTACCTGCCTAAAAAAACACATTAATTGCAGGTCATTTTTTAAAGAGCTCCACAGCTTTTCTTTCtagtgaacaaaatgtaaaactTAGCACTTTCATAAAAATAGGGAATATTAGAATAAAACATATACTAGATATACTCAAATATAGATATTGTCAGTCCAAGGGAACATTTAAAGGAAATATTAAACTCAGACAACACTGTTTTGACAAACTTGAAGTTTGTTTCTTTGTGACTGCTGTACTAATTATATGTATTGTAAGCCAGTTGTATTATAATAGTATATATTGTAGTATACTTTGAtctgtacagaaactcaagttCTTTCATTTTTTGTTAACTTTTTTTCTTGTTTGCTAATAAAAGATTGAAGATACCATGGCTACAACATTGCTGTTTGCATGTGTGATGACTTTTCAACCAAACAATAAAGTAATTTCTTCACAA

Function

NR:

description
deubiquitinating protein VCIP135-like

GO: NA

KEGG:

id description
K11861 VCPIP1, VCIP135; deubiquitinating protein VCIP135

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589552.2 True 6178 mRNA 0.46 3 23246667 23253906

Neighbor

gene id symbol gene type direction distance location
LOC110508765 crf1 coding downstream 34160 23210838 ~ 23212507 (-)
LOC110508763 LOC106599445 coding downstream 56474 23160156 ~ 23190193 (-)
LOC110508762 LOC106599443 coding downstream 91838 23144219 ~ 23154829 (-)
LOC110508760 LOC106599438 coding downstream 128344 23104071 ~ 23118323 (-)
nmnat2 nmnat2 coding downstream 191321 23042538 ~ 23055346 (-)
LOC110508767 LOC106599451 coding upstream 32600 23286506 ~ 23314443 (-)
LOC110508185 LOC106569033 coding upstream 63669 23317575 ~ 23353162 (-)
LOC110508769 LOC106599465 coding upstream 102407 23356313 ~ 23407721 (-)
LOC110508770 LOC106599468 coding upstream 190035 23443941 ~ 23588408 (-)
LOC110508771 LOC106599471 coding upstream 336131 23590037 ~ 23639543 (-)
G2119432 NA non-coding downstream 72137 23092323 ~ 23174530 (-)
G2119398 lamc2 non-coding downstream 205340 23036810 ~ 23041327 (-)
G2119395 NA non-coding downstream 207573 23033771 ~ 23039094 (-)
G2119394 NA non-coding downstream 208256 23033230 ~ 23038411 (-)
G2119393 NA non-coding downstream 208418 23033053 ~ 23038249 (-)
G2119699 NA non-coding upstream 358116 23612022 ~ 23613195 (-)
G2119766 NA non-coding upstream 474207 23728113 ~ 23732967 (-)
G2119795 NA non-coding upstream 527047 23780953 ~ 23781185 (-)
G2119796 NA non-coding upstream 528646 23782552 ~ 23782983 (-)
G2118200 brinp2 other downstream 638861 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 1298409 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 1370017 21873216 ~ 21876709 (-)
G2117313 NA other downstream 1375614 21870685 ~ 21871053 (-)
G2115838 NA other downstream 2387137 20859140 ~ 20859530 (-)
LOC110508783 LOC106599501 other upstream 1410968 24664869 ~ 24677152 (-)
G2120836 NA other upstream 1476768 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 1890156 25144062 ~ 25148520 (-)
G2121457 NA other upstream 1944342 25198248 ~ 25274626 (-)

Expression


Co-expression Network