LOC110508770 (LOC106599468)


Basic Information

Item Value
gene id LOC110508770
gene name LOC106599468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23443941 ~ 23588408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589572.2
GCTGATCATCGTAGTAAGACTTACTGCAGGAGCCGAGACCAATGGAGCTGGCTGAATCGTCCTGCATCCTCCCCATACCTTccaacctccatctctctccctgattCTGTCTCTCCTTTCATAAAACAAAACGAAACCATAGACATGGATTGTTAACTACCGCATGTGTGTCATGGATCAAGAATGAGAAACATGGATTCGATTTACATTATTCTCGTCCTCCTTGCTCCCCAATCCTATTTTTTAGCCTCTGCAGACAGGAAATTCGGTTGTTTGTTTGAGAAGGAGTTGTGCACACCATATGAGATCTGTGTCAACGATGGAATGTTCGGGAGGTGTCAATCCACACCCGTTCCGGTAGCAGAGGTGTATACGTATGATGTGTCTCCATCTGTGGTTCAGCGCTTCAGGACTCTACTGCAGAAACTCACCCACAGAGGGTTGACCTGGGAGGATGAGACTGCCCAGCAGATCCTGTCCAAGGAGCTGTCTAAGCTGAGGAAGATCCCCTACAGACGCCTACAGGACTCCAGCCCCCCTGTCTACAGCAGCAGCAAATCCAGGCCCTCTACCCAGGCTATGGACTTAGGACACCGGAGGATCAAGCCAGTGGAGGTGGAGCTCAGTAGAAACCTCCAGAACTACCTGCAGCGTCTCGGCCTCCTTCCCCAGGCCGCCTCACCCGCCAGACCCAAGAGCCCCAGTAAGAGTGACCGTTACCCATCTGGGGTCTCCTCTGACTACTACTGGCCCAAGTCCCAGGGAGAGGCAAACTTCTCCCCACTGACGTCCTTCCAGCCTCCCTACCAGGACAGATCTTCTGCGGGGGATGGAGACCTCCTTGTGGCTGCTCTCAGACACTACCTGTCTGGGCAGGTACCATCTCAGACCGGGGTGTCCACCAAGGGCCCGGTCCTGCCCTCCTTTCGCCTACGCCCCTCCTACAGCAACAGTATAGACAGTACTGGGCCTAAAGAGACCTCTCAATCTCAAACACCTAACCTGGACAGACTTCTACTCCTCCAGACAGCTGGAGCCAGCCAACTCTCTGCTCCCAAGGACCCCCTCAGTACAGTGGATGagGTGTTCATCCAGAAGGTTCTGAAGAACGTGGGCAGACACGACGTGGACGTGGACGACCTGAGTCCTAAAGACCTGGACCAACTCTCTACGCTGATCACTGACGCCCTGCAGGTAGTGGATCAAGAACATACCCAAGCCCAGTCCAGAGCAGGACCCAGAGACCTGGGGGAGGAAGGGAACGAGGGGCCTGGAGGAGAAGGGCCTGGGgaacaggaggagaaggagaagagtgtacctccatccaccacagagaaAACGGCGGAGAGCACTCCAGTAGAGGAGGCTGTGGTCCAAGAGCGAcaaatggagggagacagagagccagcagaCTCCAATGACAAGCCCCAAGACGCCAGCAGCTTATTTGGCAAGCTGCTGGTGTACCTGGATAAGATTGAGTCCCCAGCCCAGAGAGAGTCCCCAGCCCGGGCTGGTGTGGGTGCAGGGCTGGGTGAGGGGAGAGGTGTTGGTCTGGAGAACGTACACAGCAGGACCACTCAGGCTGAGgTGGCGGTGCAGAAGAAGTCGACCCACTCGACGGACATGGAGGAGGTGGCTGCCGTGGAGGGCTGGATCCAGGCAATGGATCCTCCGGCTGCCAAGGTGGTCTACCAGGAGCCCCATAAGAAGAAAGGGAACGTCCAGGAGCTGCAGCTAGATGTCAAAGCAGCTGTGGCCACGAAGAAGACTGATGATGACTACGGTTATGTCATCACCAACACTGACGCATTGCAGACTGATGAGGGCCTCCACTTGATGGAGATTCTGACACGACGCGCCAAGCTGCAGATGACTGACTTCCTGGAGCTCTCagtGGTAGGCCCAGCTGTGACCTTCAGAGTGCGACCTAATGCCCAGAACATCAGCACCGCAGATGTGGCCAATGTAGCAGTTCACCAGAAGGATGCAGTGGAGAAGGAGGCCAAGGTGATCATTCTGGAGGCTGGAATCACAGATAGAAGCCAGATAAACCAGATCCCTACCAAGTACAGCACGGCCGAGTCCACCAAGTACATGATCCTGACAGTGGTGTCTATCCTGTGTATCGTGGCTGTGCTGCTGGCCTCCGCTGTGGTCTACTGCCTCCGACACCGCTCTCACCACAAGCTCAAGGAGAAGCTCACCAACCTGGGAACAGACACAGGCAGCGATGCTACCTCCACCTATCAGGAGCTGTGTCGTCAGCGGATGTCGGTCAAGCCGCCGGCGGAGCGCCCAGAGCCGATGCACAGTGTGTCGTCACGGCTCAACAGTGTGTCGTCCCAATTCAGCGACGGGGGGCCCATGGTCAGCCCCTCGGCACGAAGCTCCACCTCCTCCTGGTCTGAGGAACCCGTCCACTCCAACATGGACATCTCCACTGGACACATGATCCTGTCTTACATGGAGGACCACCTGAAGAACAAGAATCGTCTGGAGAAGGAGTGGGAGGCTCTGTGTGCGTATCAGGCTGAGCCCAACGCCTCCACTACAGGCCTGGGGGCAGGGAACACAAAGAAGAACCGCTCCAATGCAGTGGTGGCCTATGATCACTCAAGAATTACCTTGAAGGTTGAAAACAGCCACAGCAATTCAGATTACATCAATGCCAGCCCAATTaTGGATCATGACCCACGGAACCCAGCCTACATCGCTACTCAAGGCCCTCTTCCCTCCACGGTGGCTGATTTCTGGCAGATGGTTTGGGAGAATGGCTGtgtggtcattgtcatgctgacgCCCCTCACTGAGAGTGGAGTCAAACAGTGCTACCACTACTGGCCTGACGAGGGGTCCAACCTCTACCACATCTACGAGGTGAACCTGGTGTCGGAGCACATCTGGTGTGATGACTTCTTGGTTCGTAGTTTCTACCTAAAGAACATGCAGACCAACGAGACTCGCACCGTCACACAGTTCCACTTCCTTACCTGGCTCAACCAGAATGTCCCTGAGTCCAGTCGGACACTCCTGGACTTCCGCAGAAAGGTTAACAAGTGCTACCGGGGAAGGTCTTGTCCTATAATAGTCCACTGCAGcaACGGCGCTGGGAGGAGTGGAACATACATTCTGATTGACATGGTTCTCAATAAGATGGCTAAAGGTGCTAAGGAGATTGATATTGCTGCCACCCTAGAGCACTTGAGGGATCAGCGGCCAGCTATGGTCCAGACAAAGGAGCAGTTTGAGTTTGCATTGACAGCTGTTGCGGAGGAGGTGAACGCCATACTCAAAGCTCTTCCACAGTGAGAGGTTTACCCACTACCAAGCCTCAGCAGATCTCCCCAGGGACCTCCCTCCTGTTCTCCTTCTCTCGCCCACGCTTTCTTTCCcccactccttctctccacctctctgtcttTGTGGATGTTGTGCGAGAGAGCATGACCTGATCTTAGTCGtgtataataaaaaaaacatctatTGTGAACCTATGGAGCTTGTTTCCAAACAGACAATTTAGTGCATCAAGACTTTTACTGATTGAAAAACATGTTTATCTGTTAAATTACTAGAATATATCAATGACAGAAatattgtttttgtgtgtgtgtaaattattATCTTGGTCACAACATCTGTATCATATGGCATATTTAAGTTGAATATTTGTTTTTACTTTGATCCTATTATGCGGTGTACTAAATCATACCATGTAATGTGTAttaaaaaattttaaaaattaaaacTGCTTAATTAGGTCAAGTGAACACTGATAACAATGATGCTGATGTTAATTCTAGTTACCATAGTGATAATTACACCAAGCAATATGTGTTTCTTCAGCTTGTCCAGACCTGGACAAATAATTGTATGTTGTGGACAACGATTGTGAGTAAACTTAACTAATGTCAGTAAACTAAACTAGCTAATGCCTGCCTCAAGTAAAGCAGTTCTATGAAttggtgtactgtatgtacaatgAAAACGATATTGTCATTTTGTAAATAAAGCAGTTCATTTAATCTAGGGtctggattcaatccgtatcgccaAAGTATCACAGAAGATCTGGGTTCAAATGTGAAGGTCATTTCTAATTTAGTCGACATATCCAGCGTTTACCGTTAATGCAGTTTTACCGTGAATGCAGCCTCCGCAaccgcgggaacattgcctttcatTTTCAATCATGCTATAAAGTGGATCATCGGTGCTACGGATTGAATAAAGCCCTAGATGTACATGTAGCATCAATGGCTTAAGTGTGAATATAAGCTGCCACTGGATGTCCCTGTGTCTTATTAACAACTGAGTCCATatctgcgttccaaatggcaaccCTTTCCTTATATACAATAGATaacttattttgaccagagctctggtcaaaacaagtgcactatgtagggaaaaggttGCCATTTTGGATGCTGACCAGGCAGGTTTGTCTGCACTACAGGAGTACTGTCagctaaataataataatatatgccatttagcagacgcttgtTTCCTGTACAGTCACGCGGGCCTACAGCTCTACCCCAACACTTTCTGCTTTGACTAGACTCATGCCATTAGATCACAAAATCTTGGGTCAAGCTTTCATGTTTGTCCACTGGATTCTGTTTTTTGTACACCCACTATTTTCTGAATTGCAGATGATATGACCTGTTTTTTTTGCATACACTCGCACATGGCTTTTTGAAACTATTATTCCCCAAATGTATCTCCTTCAGCCTCAAAATATATCATGTCACCATGAAGAAAGCCAAGGATATGATTTACTATTTACTTTGACAAGCCAAGGATATATAATCATGCCATTTGAGACATTCATTTCTGAAGAATAGTAGTGCAAGTACAGAGGGGAAGATAGTGGATTGTTATATTACATATTGGCATAAACTTATTTTACCTATCACGGCTGTGCTTCCAAAATGGCACCTGATTCTCTTTCTATTACACTTCTTTTCCtttggtccctggtcaaaagtagtgcactataaagggaatagggtgccatttggaagacATTCAGAGTTAAAGCGGGCCATGTTATGTGTCCCATACTGTAACCACTGCAAAAAGCTTTCAACTAATTTATTGCAAGAGATGGCTGGTTTGACCATTAATTTGTATATATATGattattaaaaaaacaacagaaaataTTTTGTTCTATCAGTGAAGATAAACTATTGTGAATAAAGTCCCATTATTGATGGCGTGTTGTATTGCAA

Function

NR:

description
receptor-type tyrosine-protein phosphatase N2-like

GO: NA

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589572.2 True 5249 mRNA 0.48 25 23443941 23588408

Neighbor

gene id symbol gene type direction distance location
LOC110508769 LOC106599465 coding downstream 36220 23356313 ~ 23407721 (-)
LOC110508185 LOC106569033 coding downstream 90779 23317575 ~ 23353162 (-)
LOC110508767 LOC106599451 coding downstream 129498 23286506 ~ 23314443 (-)
LOC110508766 LOC106599449 coding downstream 190035 23246667 ~ 23253906 (-)
LOC110508765 crf1 coding downstream 231434 23210838 ~ 23212507 (-)
LOC110508771 LOC106599471 coding upstream 1629 23590037 ~ 23639543 (-)
LOC110508186 LOC106599477 coding upstream 103959 23692367 ~ 23753592 (-)
LOC110508187 LOC106599479 coding upstream 199446 23787854 ~ 24045482 (-)
LOC110508773 LOC106599484 coding upstream 465859 24054267 ~ 24092203 (-)
LOC110508188 LOC106599618 coding upstream 557534 24145942 ~ 24159318 (-)
G2119432 NA non-coding downstream 269411 23092323 ~ 23174530 (-)
G2119398 lamc2 non-coding downstream 402614 23036810 ~ 23041327 (-)
G2119395 NA non-coding downstream 404847 23033771 ~ 23039094 (-)
G2119394 NA non-coding downstream 405530 23033230 ~ 23038411 (-)
G2119699 NA non-coding upstream 23614 23612022 ~ 23613195 (-)
G2119766 NA non-coding upstream 139705 23728113 ~ 23732967 (-)
G2119795 NA non-coding upstream 192545 23780953 ~ 23781185 (-)
G2119796 NA non-coding upstream 194144 23782552 ~ 23782983 (-)
G2119831 NA non-coding upstream 268636 23857044 ~ 23858007 (-)
G2118200 brinp2 other downstream 836135 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 1495683 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 1567291 21873216 ~ 21876709 (-)
G2117313 NA other downstream 1572888 21870685 ~ 21871053 (-)
LOC110508783 LOC106599501 other upstream 1076466 24664869 ~ 24677152 (-)
G2120836 NA other upstream 1142266 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 1555654 25144062 ~ 25148520 (-)
G2121457 NA other upstream 1609840 25198248 ~ 25274626 (-)
LOC110508791 LOC106568850 other upstream 2278893 25677135 ~ 26069268 (-)

Expression


Co-expression Network