LOC110508188 (LOC106599618)


Basic Information

Item Value
gene id LOC110508188
gene name LOC106599618
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24145942 ~ 24159318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967121.1
ATGCGATTCTTCCTTCTATCTGGTACCAGCAGTGTTGAGGTGAAGGAGAACCGCGACAGCAGAAACCAAGTGGACTATTCCACCATACTACAACCTGGACATCATACATCATCAGCTCTTTGCACTGACATCTCCAAAAGAAAGACGACAGTGGACTGTACCCTGGTACCTACACATCATACACCAGCTCTTAACACTGACATCTCCAGAGGGCTCTCCAGGACCACTGCTCTACAGAGGAAGCAGCCATTGGTGGAAGGAAAAGACAGGCTTCTCTACGAACTCCAGTTGATTTGGAAGACAATGATGACTTCCTGGTCTGGCACAAAGAAGAATGCCCTGGTGCATTTGAATGAGCTGAGACCAGGTCTACAGTATGAGATAGTGTCTCAGACAGGGCCAGTTCACGCCCCTGTGTTTGCTGTAGGAGTAGAGGTCAACGGACTCAGGTTCGAGGGCCGAGGCCCCACCAAGAAGAAGGCTAAGATGAGGGCAGCAGAGCTGGCTCTTAGGTCCTTCATCCAGTTCCCCAACGCCCATCAGGCTCACATCACCATGGGAAACCTCAACTTCATCAACACCACAGCACCAGCAGACTTCACCTCAGATCAGGCTGATCTCGTCCCCGACACGCTCTTCAAGGAGTTTCAGCCAGAAGCACAGGAAGACCAAATCCTTAATCACAGAACAGGGGGAAAGGAGTTGCAGTTTGAGGAACCACCAGCACAAGGACAACTCTACAGAGCAGCGAAAAAAGGACAGGAGTTGCTCTCCAGTATCTGTAACCATGGGAGATTAGTGCGCCTGACCCTTGACCTGATGTCCTCAGCCAATCAGAAGAGGCAGAGGATCGGTTCCTCTATCGTTGGGGAACTGAGGCCCGTGGCTCTGCTCAATGAGTTAATGCCAGGCTTGAGGTACGTCTgcctgacagagagaaagaaaggcagGCCGATCAGGAGCTTTGTGATGGCAGTACGGGTGGATGGAAGGGTATTTGAGGGCTGTGGGCGCAGTAAGAGGCTGGCTAAAGCTTCAGCAGCAGCCTCAGCCCTACAGGACTTGTTTAACATCAGTCTGGGTCCTGAGAGGAGCATCAGAAATACTGCCAGCTGGGCCAAGAGCGCACAGCTACCTCAGTGCTTTGCAGAGTATATCTTCCACTtggtgagagagaaacacagtgagCTGGCTGACTGTTGCTGCACTCCCTCCCAGTCGCACAGGCGTCACAAAGTACTGGCAGGCATCGTAATGACCAGAGGTTTTGATCTGAGGCGTGCCCAGGTGGTGTCTTTGGGGACAGGGACCAAGTGTATCAGTGGAGAGTGTGTCAGTGACCAGGGATGGGCGGTTAATGACTGCCATGCTGAGGTCACCACCAGGAGGGCTTTCCTCCGCTTCCTCTATGCCCAACTGGAGCTTTTCCTCtgCAACCGGCCAGGCAGTTTGGAGCAGTCGATTTTTGTGCGAGACAAAGAGTCAGTATACAGACTGAGAGACGGTATTCTGTTCCATATGTATGTGAGTTCATCGCCCTGTGGGGACGCACGCCTCAACTGTCCCTACGAGATCACAGCTACACaccaGAGCGGGTATAGATTTGTGAGGAAGTTGCGCTGCCATCTGAGGATGAAGATGGAAGGTGGTGAGGGTACACTTCCTGTCAGCGTACTGAGAGCCAATCAGAAATGGGACAGGAGGTTGCCGAGGGAAGCTCCCGTAACCATGTCCTGCACAGATAAAATTGCCAGGTGGAATATTCTAGGTCTCCAGGGCTCTCTCCTATCTCACCTGGTGGAGCCGGTGTACCTCCACAGCCTCACAGTGGGCAGCCTGTGCCACACGGGTCACCTGGGAAGGACCATGGCACGACGCATGGGCCACATCGCCCCTCTGCCCTCGTCCTATAGACGCAACAGGCTACTGCTCGGCTGCCTCAGCAGCAGTGAGGGTCGGCAGCCAGGGAAGTCCCCCAGCTTCAGTGTGAACTGGAGTGCTGGAgatggagagctggaggtggtggATGTCTCCACAGGCAGGAAAGACTCAGGGACACCATCCAGACTCTGCAAGAGATCCTTCTTCACTCGCTGGGAGAGACTACACCACCAGCTTAGCAGTCCAGGAGGAGTATTGGATGCAGAGGAGGCCCATTTTCTTATGTCAAATAGCACAAAGACTCTGTCTGCACGGTCGGTTGAGGGAAGAGTATCGCCTAGGAGTGACGCCACCTGTCGGAAGAAAATGGAGGAGGCCATGAAGACGTACTGTGGAGCTAAGATGGCAGCAGGGGCCTACCAGAGAGCCAGGCAGAAGTTTGTCGTCTCGCTGCAGGAGGCAGGTCTGGGCATCTGGAACAGGAAACCACCAGAACAGGAGCATTTCCAGAGCAGGGTGTGAGGGGCTCTCCAGTCCAGGGAATTTTCTTTAGCCAaattccctcacacacacacacacgcacgcacgcacgcgcacgcgcacacacac

Function

NR:

description
double-stranded RNA-specific editase B2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967121.1 True 2490 mRNA 0.54 10 24145942 24159318

Neighbor

gene id symbol gene type direction distance location
LOC110508773 LOC106599484 coding downstream 53739 24054267 ~ 24092203 (-)
LOC110508187 LOC106599479 coding downstream 100460 23787854 ~ 24045482 (-)
LOC110508186 LOC106599477 coding downstream 392350 23692367 ~ 23753592 (-)
LOC110508771 LOC106599471 coding downstream 506399 23590037 ~ 23639543 (-)
LOC110508770 LOC106599468 coding downstream 557534 23443941 ~ 23588408 (-)
LOC110508776 LOC106599488 coding upstream 70964 24230282 ~ 24250601 (-)
LOC110508778 LOC106599490 coding upstream 176849 24336167 ~ 24343111 (-)
LOC118944850 NA coding upstream 328077 24487395 ~ 24490326 (-)
LOC118944874 NA coding upstream 386345 24545663 ~ 24547396 (-)
LOC110508780 NA coding upstream 464635 24623953 ~ 24627150 (-)
G2119831 NA non-coding downstream 287935 23857044 ~ 23858007 (-)
G2119796 NA non-coding downstream 362959 23782552 ~ 23782983 (-)
G2119795 NA non-coding downstream 364757 23780953 ~ 23781185 (-)
G2119766 NA non-coding downstream 412975 23728113 ~ 23732967 (-)
G2119699 NA non-coding downstream 532747 23612022 ~ 23613195 (-)
G2120036 NA non-coding upstream 20901 24180219 ~ 24180498 (-)
G2120613 NA non-coding upstream 202386 24361704 ~ 24361903 (-)
G2120615 NA non-coding upstream 205249 24364567 ~ 24366627 (-)
LOC110508783 LOC106599501 non-coding upstream 505556 24664869 ~ 24677152 (-)
G2120928 NA non-coding upstream 703773 24863091 ~ 24865205 (-)
LOC110508185 LOC106569033 other downstream 816327 23317575 ~ 23353162 (-)
G2118200 brinp2 other downstream 1538136 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 2197684 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 2269292 21873216 ~ 21876709 (-)
G2117313 NA other downstream 2274889 21870685 ~ 21871053 (-)
G2120836 NA other upstream 571356 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 984744 25144062 ~ 25148520 (-)
G2121457 NA other upstream 1038930 25198248 ~ 25274626 (-)
LOC110508791 LOC106568850 other upstream 1707983 25677135 ~ 26069268 (-)

Expression


Co-expression Network