LOC110508776 (LOC106599488)


Basic Information

Item Value
gene id LOC110508776
gene name LOC106599488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24230282 ~ 24250601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589582.2
GCAGATGCCACGTTAACATGTCCACTTCAATTTCAGTGTGTCAACTACTGACAGCATGAGAGGATATGGATGTGCAGCAAACCAAATTGTGCTGACGTTATGATAGTAAAGCTGTTCAGCGTATACTATTCGGATATGCACGTTCATTGATAAATACCAATTAGATATATTGTCACTAAATTAAGGAAATGATGTTTAGGCAGAGTAAAACAGTTCTCCAGAAACTTCGAAATCTACGTTTCCAGTGGCAGAATCCTTCATGGAGGTTCAGGAGCACCTCAGCAACAGAGAGGGCATTGCAGTACCAGGCAGGACAGAAGATCCATGGCTTCACAGTTAAGGAGGTGGTTACTGTTCCTGACCTGTTCCTTACAGCTGTCAAACTGACCCATGACAACACAGGCGCCCAGTATCTACACGCAGCTAGAGATGACAAGAACAATCTCTTTAGTGTTCAGCTCAGGACGACCCCAATGGACAACACAGGGGTCCCACACATCCTGGAACACACAGTGTTGTGTGGCTCAGAGAAGTACCCCTGCAGAGACCCCTTTTTCAAGATGCTCAACAGATCCCTCTCCACCTTCATGAACGCattcacagcTAGTGATTTCACTATGTATCCCTTCTCCACACAAAACGGGAAAGACTTCCAGAATCTCCTCTCCGTGTATCTGGATGCAGTGTTTTTCCCTTGTCTACGAGAACTTGATTTTTGGCAGGAGGGATGGAGACTGGAGAATGAAAAACCTACAGATCCTACTTCCCCTTTGGTCTTCAAAGGAGTTGTCTTCAATGAAATGAAGGGCGCTTTTTCAGACAACGAGAGGGTATATGCCCAGCACCTGCAGAACAAGCTGTTTCCTGACCACACATACGGTGTGGTGTCTGGAGGGGAACCCCTGGCCATCCCTGACCTCTCCTGGGAACAACTGAAGCACTTCCACGCTACACACTACCACCCCAGCAATGCAAGGTTCTTCACCTACGGGGATCTGCCCTTAGAGCAGCACTTGAAACAGATCCAGGAGGAGGCTCTGTCCAAGTTTGAGCGCACTGAGCCTGACACTGCTGTCCCTAACCAACCCCACTGGGACAGGCCTagagaggaccatgTGACCTGCAGTCCCGATGCTATGGCTCCTGATGCAGCCAAACAGAACACGCTGTGTATGAGCTACCTGCTAGGAGACATCACAGATACATTTGAGGGTTTCACCCTGAGCCTGCTGTCCTCTCTGATGATCTCTGGACCCAACTCTCCCTTCTACAAGACCCTCATAGAACCCAAGATAGGAACAAACTTCTCCTCTGTCGTAGGATACGATGGGAGCACCAAAGAGGCATCATTCAGCATAGGCTTGCAAGGAATGGCTGAAGAAGACACTGAGAAAGTCAAGCAAATCATTGTCCAAACCATTGATGAGATCATTGCCAATGGAtttgaggaggagaggatagaggccCTGCTTCATAAGATTGAAATCCAGATGAAACATCAGTCTACCAGCTTCGGGTTGTCACTGGCCTCATACATAGCTTCCTGTTGGAACCATGATGGAGACCCGGTCCAGCTGCTGAAGATCAGTGACAGTGTGACCCAGTTCAGAGAAGCCCTGAAGGACAACCCTCGCTTCCTCCAGGAGAAAGTCCTACACTACTTCAAGGACAACACTCACAGGCTGACTCTGTCTATGAGTCCCGATGAGGCGTACCTGGAGAAACAAGTCAAAGCAGAGGAGGAGAAACTCCAGAAGAAGGTACAGGCTCTGTCTGAGAGTGACAAGAAAGACATCTATGAGAAAGGTCTTGAGCTGCTATCGGTTCAGAGCAAGATCCAGGATGCCTCATGTCTCCCTGCCCTGAAAGTGTCTGACATTGAGCCAACGATAGCAGTCACACCTGTAGAGATGGGCACTGCAGGAGGTGTCCCTGTGCAGTACTGTGAGCAGCCAACCAATGGGATGGTCTACTTCAGGGCTATGTGTAGTCTCAACACCCTCCCTGAAGACCTCAAACTATATGTGCCCCTCTTCTGCAGTGTCATCACCAAGATGGGCTGTGGAGGGCTGGACTACAGGCAGCAGGCCCAGCAGATGGAGCTGAAGACTGGAGGCATGTCCATCTCCACATCAGTCAACCCTGACTACTCTAACATGGACATGTATGAACAGGGAGTCCTCCTCTCATCTTCCTGTCTGGAGAGGAATCTTCCTGATATGTTTCACCTGTGGAGTGACATATTCAACAGCCCGCACTTTGATGATGAGGAGCGTCTGCGTGTGCTGGTCATGATATCGGCTCAGGAACTTGCCAATGGGATCTCTTACTCTGGTCACATGTACGCCATGACGAGGGCGGCTCGCAGTCTGACCCCAACAGGAGAATTACAGGAGACCTTCGGAGGGATGGAGCAGGTCAAGTTCATGAAAAGGATTGCGGAGATGCCAGACCTCACCCAAGTTCTACGGACACTTCCTAGAATAAAGAGACACATTCTCAACCCACTGAACATGAGATGTGCGGTCAACTCAACTCCTCAGAAGATGTCTGATGCCGCTGGACAGTTGGATAACTTCATGTCTAACGTTGCTTCCAATAAGAAGGATCGCAAACCCGTCCGCTCCGATATCACTGAGAGACCTCTTGACTCACTGGCAGCTCCTGGATCTGGCCCAAGTAGAAAACTAATCACTGAGCCCAACTTCAAGCCCTGCCAGATGAAGACATTTTTCCCAATGCCCTTCCCAATCAACTTTGTCAGCGAGTGTATCCGCACCGTGCCCTTCACCCATGAGGACTATGCGAGcctgaATATCCTGTCCCGGATGATGACTGCTAAGTACCTGcacagagagatcagagagaaggGTGGGGCCTATGGTGGAGGGGCCAGGGTGGGAGGAGGACTATTCACCTTCTATTCATACAGAGACCCCAACTCGGTGCAGACTCTGTCAACCTTCCGTAAGAGTGTGGACTGGGTCAGATCAGGACAGTTTACCCAGCAGGACATCGACGAGGCCAAGCTGTCCGTGTTCTCAGCCGTGGATTCCCCCGTCGCCCCCTCCAATAAAGGTATGGGCCGTTTCCTGAGTGGAATCACAGATGAGTTGAAACAGGCCCACAGAGAGAGACTCTTCGCTGTCACAGACAAGAGCCTGGTCGATGTGGCTGGCAGGTACCTTGGCATTGGACAGAGGACATGTGGAGTTGCTATTCTTGGTCCTGAGAATGACATCATCAAGAAAGACCCCTCATGGGTGGTAAAATAACATCAGGGAAATGATCCACATGTATCTTCTCCAATTAAGAGACTTCAGATACACTGTGTTTGATGGTAAGTGATCAGTGGTACTTGATTGTCCTAAAAAACTGGACTGTTGCTACAGTGTTATAATATACATTTATTATTGAATTAACCAGACAGTTGCTTTGGTTTTTGATGTTACGGCGCTGTGTTACAAAGTTTAATATTCCATTGAGGTATGTGTGTAAAGCTATTTTGTAGGCAAACTGAATGCGCACAACAGTAAACAGATAATTTCATGTCTAACCTCACCTGAATACCATATTCATAATGTATCAAATATGACAACGTACATTTCATTCAAAACATCAGAATTTCTTTATGGCATAGAACCCTACCTCTGGCTTCAGAATGTGTACAAGTATGTACAGCGATGGCTCCTGTTTACTGAAATATTGTATTTCTATAGAGTACATGTGTATACAAAAATATGACCATTAAATTATCATGATGTTGTAA

Function

NR:

description
presequence protease, mitochondrial-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K06972 PITRM1, PreP, CYM1; presequence protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589582.2 True 3769 mRNA 0.48 27 24230282 24250601

Neighbor

gene id symbol gene type direction distance location
LOC110508188 LOC106599618 coding downstream 70964 24145942 ~ 24159318 (-)
LOC110508773 LOC106599484 coding downstream 138079 24054267 ~ 24092203 (-)
LOC110508187 LOC106599479 coding downstream 184800 23787854 ~ 24045482 (-)
LOC110508186 LOC106599477 coding downstream 476690 23692367 ~ 23753592 (-)
LOC110508771 LOC106599471 coding downstream 590739 23590037 ~ 23639543 (-)
LOC110508778 LOC106599490 coding upstream 85566 24336167 ~ 24343111 (-)
LOC118944850 NA coding upstream 236794 24487395 ~ 24490326 (-)
LOC118944874 NA coding upstream 295062 24545663 ~ 24547396 (-)
LOC110508780 NA coding upstream 373352 24623953 ~ 24627150 (-)
LOC110508781 LOC105017795 coding upstream 378321 24628922 ~ 24657867 (-)
G2120036 NA non-coding downstream 49784 24180219 ~ 24180498 (-)
G2119831 NA non-coding downstream 372275 23857044 ~ 23858007 (-)
G2119796 NA non-coding downstream 447299 23782552 ~ 23782983 (-)
G2119795 NA non-coding downstream 449097 23780953 ~ 23781185 (-)
G2119766 NA non-coding downstream 497315 23728113 ~ 23732967 (-)
G2120613 NA non-coding upstream 111103 24361704 ~ 24361903 (-)
G2120615 NA non-coding upstream 113966 24364567 ~ 24366627 (-)
LOC110508783 LOC106599501 non-coding upstream 414273 24664869 ~ 24677152 (-)
G2120928 NA non-coding upstream 612490 24863091 ~ 24865205 (-)
G2120929 NA non-coding upstream 613026 24863627 ~ 24863996 (-)
LOC110508185 LOC106569033 other downstream 900667 23317575 ~ 23353162 (-)
G2118200 brinp2 other downstream 1622476 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 2282024 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 2353632 21873216 ~ 21876709 (-)
G2117313 NA other downstream 2359229 21870685 ~ 21871053 (-)
G2120836 NA other upstream 480073 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 893461 25144062 ~ 25148520 (-)
G2121457 NA other upstream 947647 25198248 ~ 25274626 (-)
LOC110508791 LOC106568850 other upstream 1616700 25677135 ~ 26069268 (-)

Expression


Co-expression Network