LOC110508778 (LOC106599490)


Basic Information

Item Value
gene id LOC110508778
gene name LOC106599490
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24336167 ~ 24343111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589593.2
TAGGGAAGTTTACAGTGTCGACGGACTTTCAGGGAGTTCACTGTTTGCTATTAGAGCAAGCAAGAAAGAAAGAGCGTTCCCCGAAGAACACTTTCACCACTGGAAGGCGATCGTCAGACTTACTGCTCTCAACTTTTTTATAACAGCATATTATACATGCTAAGACATCGAAGGcgcacgtttaaaaaaaaaagaagacaattCAACTACCTTGAATTTTGGGTGTAATTGCAGCTGCATCTATATAGGAGCGAAATGGATGTTATTCCTATGTGCAGCATTTTTCAGGAGCTCCAGATTGTACATGACACCGGATACTTTTCAGCTTTACCATCTCTCGAGGAGTACTGGCAGCAGACATGTCTGGAGTTGGAGCGGTACCTCCAGAGCGAGCCCTACGTCTCGGCCACAGACGTCAAGTTTGAGACGAGCCAGGAGGACCTCTGGATGATCCTGGCCCGTGGGGACAAGGCCGAGTCCGACCCAAAGATCCTAACTCACATTAAGGAGGAAGACAATCAGGAGGCCAACAGCTTTAACTCGGACGCCAGCAGCGAGGCGTCCGACGGCTCCGATGACCTCTCCCCTACCCTCGACTTCACCTCCAACCCACTGAGTGACAttatgggagagggagaggacctGAGTTCTACTGTTATCAGTACTCCACCATCTTCTCCTGaggtgagcaaggaggcctcctCCATATCCTCCCAGGTGTGGAGCGGTATACAGACCGTGTTGCACTCACCTGGGAAACTACAGACCGGGGGCATTGGTGGACGAACGGCCGAGAGGGGAAGCTTAGCCAATGGAGAGGATTCTCCAGATGGGAGGAGGCGGGTCCATAGGTGTCATTTCAACGGATGCCGTAAGGTCTACACGAAAAGTTCCCACTTGAAAGCACACCAGCGTACACATACAGGTGAGAAGCCTTACAGGTGCTCATGGGAAGGCTGTGAGTGGCGTTTTGCAAGGAGTGATGAGCTAACCAGACACTTCAGGAAGCACACTGGGGCAAAGCCATTTAAATGCAGTCACTGTGACAGgTGTTTCTCTCGCTCGGACCATTTGGCGCTTCACATGAAGAGACACATCTAAGAGTTGGGTCCCAGAGCGGTGTTGAGGGATGGTCCTGACGGTCTCCTAACCTGCCTGTGGGGAGGTGCAGTGCCCTGAGAGGGGAGGAAGGTGAACAAGGGGAGCGTGCCCCAGTAAAAGCATGCAGGCAATTTCTGCACCATACTTAGTACCTCCAAGACCTCTCGGAGGAAAGAGCTCTGAAAGGTCGACACATTCTGGAAAAAGAATCACGGAAACCAACAAGGATGACGGAGAATGAAGAGATCCGCTAGAGAGAAATAAGAACATGTCAGAGGACAAGGAATAATGTTTTGTCTTTGTATGGTGTCTGATGCTTTGTGGAGTTAGTTCCTGGTCTGGACACATGCAGCGATACTACTCCAATAAACATGTGTTGCTTGTGAGAATGCCTGTGACTGAGTGCCTGCCTGTGGATATATTACTATTAAGTGTATGGTTGTGAGCTGAATGGCGTTGAGGGGATGTTGTGTGGGCTGGGGGTTTGTCTCGTTTTGTggtaatgaatgaatgaatgaatgaatgcaagCAAAGGTGTTGTGCTGTTGTGTGGGGCATTGGTTGAATCTAGGCTGGGtttggcagtgtgtgtgtccgAACCGCCAGTTTGAGGTTTGAGAGGGAGCGCCCCCATCTGAGAGGAGGTGGTAGGACACTCTTAAACGAGGTGGGGATGAGGGAAGTGGATTGTTTGGCGCAGATATAAATTGTGCAATGTATTAAGTAGCGCGTCTCAAAGTTAATGCTACCAAGCTCATTTGTTGTCCATTGTGTAAGCTCTGTATCTAATggttgtacaaaacattaatacCTTCATTATACCAGAAGTTGCATGATCTTGGGTTTGTTTGTCACTCGATGAGTTATAATGAGGGCAAATCCCAATAACAAGCAGCTATACATCTGTTTTACACCATAGATACCACATTATTGTACAGAAACATGTAGCAGTGACTTATTTCTTTTGTTGTGTGTCTGGAGATATCACTATTGCTTGGCAACTGCCTTGATCATGGAATAGTTTATTTCTATTCCGTTTAAAAATGAATTTCTTTATTTTTGTTCTCTTGCTCTCCTCTTTTTCTATATCTGTAAATGCACTGTTGACCTTAATGATGCCTTATGTAAGTGGCCTTGTCCAGATAAATAGATCACTCACATGGGGGGGTTGAAATGCAGTAGTGTATGATTTGAATAGCTTTATTAAGGAGCTGATTCATATGGCCACACCTTTTGCCCTTGTCTAGGTCAGTCTCAAAACTTGAATAAAAGTCAGCTTTATACTTACTGACATTTTACATTTCTGTGCATCATTTGTCAACATACAGTATCTATCCATTAGGACATaatcaaaatgtttttaaaatgatcCCTGAGCCGAGACACAATTGTAGAGCACTTGAAACAATTACATTTGAAATGGTTTACTACTGTGTAGTAGCATAATGTGGTATGTTATGCTCTTAAAATGAAATGTGGGATGGTAAATTGGGGAAGTTATTGTCAATTATAGAGTCTCCTAGTTGGTTGGGGGGTTGAGTTCTCGTGACATGTGATCTGCTCGGCCACAAAGGCCTTGGTAAATTAAGATTGATTGCAAATAACCAATTCTGGTCAGGCCATGGTATGTTTAGTGTCTGTTGAATTGTTAAACGCTTACCTGACATGAGTGCTCTCAAACTGACAGTGGATGCTTATTGACCTGCATGGACTTCCTTGTTTTAACACCATACCATTGTACAGTACAGTTGATCTGGTCAACAGTACTGTCAGAAAGTCTCCTTTTAAAATGTACATTGTGGATATCAAACCATGCAAAATGTGTTatttaaaaatagtttttttcaAAGAAGCTTATATTTTGCAGGGTAAGGGACCAAACAAATCTAAATTGTGCAGTTTGTTTATGAAAAAGACCAGGACACATTTAACTTGAGAGTACTAATGGctcaacaaacaaaacaaatgatGTATTGTTTACTTCTGATAGTCTGCTACAGTGTTGGAGAATGATTGACATGTTCTAGCTTGAACGGGGAATGATTCAGTAAAGAGAAATGAAACTGATTGTTGGAGGGATTACACACTGAACAGCTTTCTATAATCAAAATCAAAACTGCAAATTGTCAGCCCTATCTTTAACTAAAGTATCTTTATTGATGAAAAAAAAAGGTTTATTTTTGTTTGATTAatggcatgtttttttttttttcaaattgttTTGTAAAATAGTTATTTCTGTATGAATGTATTTTTTATTGGAGTAATGAttaaaaaatctcaaata

Function

NR:

description
Krueppel-like factor 6

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589593.2 True 3388 mRNA 0.43 4 24336167 24343111

Neighbor

gene id symbol gene type direction distance location
LOC110508776 LOC106599488 coding downstream 85566 24230282 ~ 24250601 (-)
LOC110508188 LOC106599618 coding downstream 176849 24145942 ~ 24159318 (-)
LOC110508773 LOC106599484 coding downstream 243964 24054267 ~ 24092203 (-)
LOC110508187 LOC106599479 coding downstream 290685 23787854 ~ 24045482 (-)
LOC110508186 LOC106599477 coding downstream 582575 23692367 ~ 23753592 (-)
LOC118944850 NA coding upstream 144284 24487395 ~ 24490326 (-)
LOC118944874 NA coding upstream 202552 24545663 ~ 24547396 (-)
LOC110508780 NA coding upstream 280842 24623953 ~ 24627150 (-)
LOC110508781 LOC105017795 coding upstream 285811 24628922 ~ 24657867 (-)
LOC110508783 LOC106599501 coding upstream 321758 24664869 ~ 24677152 (-)
G2120036 NA non-coding downstream 155669 24180219 ~ 24180498 (-)
G2119831 NA non-coding downstream 478160 23857044 ~ 23858007 (-)
G2119796 NA non-coding downstream 553184 23782552 ~ 23782983 (-)
G2119795 NA non-coding downstream 554982 23780953 ~ 23781185 (-)
G2119766 NA non-coding downstream 603200 23728113 ~ 23732967 (-)
G2120613 NA non-coding upstream 18593 24361704 ~ 24361903 (-)
G2120615 NA non-coding upstream 21456 24364567 ~ 24366627 (-)
G2120928 NA non-coding upstream 519980 24863091 ~ 24865205 (-)
G2120929 NA non-coding upstream 520516 24863627 ~ 24863996 (-)
LOC110508185 LOC106569033 other downstream 1006552 23317575 ~ 23353162 (-)
G2118200 brinp2 other downstream 1728361 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 2387909 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 2459517 21873216 ~ 21876709 (-)
G2117313 NA other downstream 2465114 21870685 ~ 21871053 (-)
G2120836 NA other upstream 387563 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 800951 25144062 ~ 25148520 (-)
G2121457 NA other upstream 855137 25198248 ~ 25274626 (-)
LOC110508791 LOC106568850 other upstream 1524190 25677135 ~ 26069268 (-)

Expression


Co-expression Network