LOC118944850


Basic Information

Item Value
gene id LOC118944850
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24487395 ~ 24490326 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040229.1
tagtgctctaaatAGGGTATCTGTTTGTCTTTCCTTGTGTTGAAGGGTGGAGGATATCTCCTGAGAGCACGGGACTTCCTGGTGTTtgtgtagggatgtagggattGGGTTGGATGCAACAGCGATTGCACTGCCATGGTTGGCTGGAAGTGGAGAGGCTTTAAGGATCAGGAGTTTGGGTGTTTCACTGTAGTCCAAAAAAGcaccacatactgtatgtgtctgatAGAGTGCTACTTTGCTCAACTCATCTGCCATAGACATTCATTGGTGGACACAAAAGTAAGAAgaggtatacattttttttatgtttgtcaAAGTGTGTGTATTATGGAGTTTTAATGTAGGTTTAGACAAAACATCTCCTGTGCAAGCTCTAATTCTATGCACTTTTCTAGGACACTAGACGGGGGCTCGTCTCAGCCTGAAGTCAGAGAGCCAGGAAACAATCAACACAATTCAATAATCACCAGCTAGGACTGTCCGTTCATATGGAGTCAAGGCATTTCTCTGGGTTTATTTACCTTGGATCCAATTCCATTTGCTTTTTAATTTCATGGCCAAGTGGACCTCCCTGACTTCCTGGCCTTCCACCCGGGGTCGAatcccccctccctttctctgcctTCCCTCCCCCTGAAAACACAAACTGCGGGCACAAAGGTCACGCCACTCTCCTACAAGCCACACATACACACGATGAAGAGGTCCCTGGCTGCATACTCACACGGACGCACGCACgtatgcatgcacgcacacacacacacacacacacgcaagcactgTGCGCACACACTTACAGATACAGCTGTCCCAGATACAGCTGTCCCTGGATCACTTTGCTTGTTTCCCCTGACATCCTCCATGTAAGAAACACACACGGCTGTGGCTATCAGTCGAGTCTCTGCACAGCATAAAGATGTCATCGAACAGCGACTGTAAATCTCACTTAAAGCATTGTGAGTCTTCCTAGGGAGGAGGATGTGCTGTGTCACGAGGCAGAATACAGAGTTTCCAGCACTGTGACAGTTTAAATGCACAGGTTGAGAAGTAGCAGTGGATGATGGTTCTGGAGGCATTATAAGATAACCATGATGGATGATGGTTGAGAGGATGAGGTCAGGAAGTTCCTTGGGATCAAGTCTACATTCTGTAACACAGCAGATTGTGAGAGGAAGCCACAACTCCAGCTACTGGGAGACCATGCTGACTCCATGCTGACTCTGAGATCTCCACGATCCCCTACTGACTGAATGGGTAAACTCTCCCGGTGAACCTGGCTCCAGTTGTTTGTGTATGTAATATGCACTGCAGGTATGTGAGGGATGTTTTGGTTTCTCCGCTGCTCTTTGCTAAAGCCATTATTTTGGGGGGAGAGTTGTCATGGTGATCCTTAGCTTGATGCTGCTGCTAATTCCACAAAGTTTAAGTAGAGAATGAAAAGGAAATCATTCAATGAAAGGTGTTGGTGTGCTTCTATGTGTGTTAACCATACACTGCACTGCACTTGTTTTGGGGGCTTTTTTTGTTTGGCACCCTATGATTCATATGATGGTATGAGACATGGTATGAGATGTACTCAACATGAGACTCTAGAGACATAACTGAATTATATTTGATCAACCCAATTAATTATTTGTATATGCCAGGATTAATAATCAACTCTTCTGCTGATTGGCTACAACAGGGACATGACGTTTCCTGTATTGAGTATTTCCTGTTCAGCTTATTCACTGACATTTGGCCCTTGGCAGTCATAGCAattcctatcctctctctctctacattgtgCTAGGCTTTTTCATTCACTGAAATGCTTGTCCAAGGTGTCTGCCAGATGCAGACAAACCTTGcaactcaaatggcaccctattccctacacagtgcactacctttgatgggctctggtcacaagtagtgcactacatacggtagggaatagggtgccatttgggatgcacaacaGTCATACATAGTTATAGTAATGATAACAATTATGAAGTCTATGCACTTACTGTGCCCCCTGGCTCCTCCTGGAGACACTGATCTTTAACATAGAAgctttgtagtgtgtgtgtgttctgtgtgtgtgtgtgtgtacgcaacCTGTAACGTCTAAGCTCTGTAGTAGCTGTTGATACTGTAGATGCTGAGGGAGTGATTTATCTGCTGCACTGCTGGTGCTCCTCCTGGGAGCAGTCCGTCTGCTGTGAGGAGGCTGACTTTGACGGCTCTATACACTTTGACTGAATGATATCAGAgattgcatctcaaatggcaccttattcactatatagtgcactatgtagggaatagggtgccattttggatgcagacaGAGTCCCGATTAGGCTCCTGGGTAGTTTAACCACAGAACAGACCAACTGGCACTGTCGATGATTGAGCCAAGGACGTTAGTCTTGGCAAGAGCTGTGAACATTTAATGTTTCTATTCCCCCTGTGTGTTTACGACAAATGGATTTGGCTCTGTCTttcattaaataaatataaaatctgAATATAAAAGTTCAAGACCCTGCTGGAGTCGAAGACCCAGGTATGAGTTTTTCTCTTCTTTCAGACTTAGTATTTAAGAGGCAATCTGGGATTCAGACAACAACAAAGCTACAAAGTCACTGTTttagtaaacagctgagggatgggcctggagaaatgtaactattCTCAATTTCATAGaccgagctatggatgcaaggactgactgcATTTATGTTATAGTCTATGGAtgtagattgcccctttaacaaaTGCTGCATGTTGGTGTCACCAGAGACCTATGACTGTTCCTAATAAAATGGTGATGTAATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040229.1 True 2831 mRNA 0.45 2 24487395 24490326

Neighbor

gene id symbol gene type direction distance location
LOC110508778 LOC106599490 coding downstream 144284 24336167 ~ 24343111 (-)
LOC110508776 LOC106599488 coding downstream 236794 24230282 ~ 24250601 (-)
LOC110508188 LOC106599618 coding downstream 328077 24145942 ~ 24159318 (-)
LOC110508773 LOC106599484 coding downstream 395192 24054267 ~ 24092203 (-)
LOC110508187 LOC106599479 coding downstream 441913 23787854 ~ 24045482 (-)
LOC118944874 NA coding upstream 55337 24545663 ~ 24547396 (-)
LOC110508780 NA coding upstream 133627 24623953 ~ 24627150 (-)
LOC110508781 LOC105017795 coding upstream 138596 24628922 ~ 24657867 (-)
LOC110508783 LOC106599501 coding upstream 174543 24664869 ~ 24677152 (-)
LOC110508788 LOC106599520 coding upstream 725016 25215342 ~ 25232530 (-)
G2120615 NA non-coding downstream 120768 24364567 ~ 24366627 (-)
G2120613 NA non-coding downstream 125492 24361704 ~ 24361903 (-)
G2120036 NA non-coding downstream 306897 24180219 ~ 24180498 (-)
G2119831 NA non-coding downstream 629388 23857044 ~ 23858007 (-)
G2119796 NA non-coding downstream 704412 23782552 ~ 23782983 (-)
G2120928 NA non-coding upstream 372765 24863091 ~ 24865205 (-)
G2120929 NA non-coding upstream 373301 24863627 ~ 24863996 (-)
G2120982 NA non-coding upstream 450555 24940881 ~ 24941255 (-)
G2120993 NA non-coding upstream 460204 24950530 ~ 24950948 (-)
LOC110508185 LOC106569033 other downstream 1157780 23317575 ~ 23353162 (-)
G2118200 brinp2 other downstream 1879589 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 2539137 21942981 ~ 21948557 (-)
mrps14 mrps14 other downstream 2610745 21873216 ~ 21876709 (-)
G2117313 NA other downstream 2616342 21870685 ~ 21871053 (-)
G2120836 NA other upstream 240348 24730674 ~ 24734987 (-)
G2121444 LOC106599515 other upstream 653736 25144062 ~ 25148520 (-)
G2121457 NA other upstream 707922 25198248 ~ 25274626 (-)
LOC110508791 LOC106568850 other upstream 1376975 25677135 ~ 26069268 (-)

Expression


Co-expression Network