LOC110508800 (LOC106599548)


Basic Information

Item Value
gene id LOC110508800
gene name LOC106599548
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26707377 ~ 26709568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589627.2
GCGTAGTCAGCCCCTCTATTCATATGTAAATTGGGTGAGGCGTTATAAATACCTACTACTGGCACTATCGTTGCGCTTGAGGCTGCATAACAAATCAAGTGCCCGTCTGCACAAGTACAGTTTGGCTTTGTTTGCAACAGGGACCGGAGGCCATCTGTCCCATTCACGGTGTGTAACGGTCGTGTGGATTTATCAACCCTCCGTTTTTGGCAGTGTCTGGGTTAAACTTCTCCAACATGGCCCCCACTCCCAATAATAAAAACGGACTGAGAAGAGACGAGGGTGAATACTATGGCATTAAAGTGGACAGAAAGaccaGAAAACCGTTGGTTGAGAAAAAAAGACGGGCTCGCATCAATGAAAGTTTGCAAGAACTCCGAGTTCTGCTCGCAGACACAGATTTACAATTAAAGATGGAGAACGCCGAAGTGCTGGAGATGACTGTGAAACGAGTGGAGAGTATCATTCAAAGCCGAGCACAAGAGGTGGACACTGTGAACCGGGAAGCACGCGAAAGGTTTGCTGCGGGCTACATCCAGTGCATGCATGAGGTGCACACCTTCGTGTCCAACTGCCCTGGAATTGACGTGACCATTGCGGCAGAGCTCTTGAACCACCTCCTCGAATGTATGCCCCTAAACGACGAGGACAAATTCCAGGTGATGATCCAAGATATCATGACAGACTGCTCCACTAACAGTAACAGCACTTGGCCCAGTTCTGAGGGCATATACGCAGCACTGGTCTCCCCTGGGGGAAAGAGCATCTCCAGCGGCAGCTCCTCAGCCCTCTCCCCGGCGCCCTCCACTACCTCCAGCGATGACCTGTGCTCGGATCTGGAGGAGACTGACTCTGAGCAGAACCACATCTCTGTGGAAGCTGAGAACCAGGATGTTCTGAACATGCCCACAGCGGCTTATTCCAAGTCCATGTGGAGACCCTGGTAGAGCCCCAAATGAGGCCTACAACTGTCCTGTACTAGAGGAATAGCCTGCAATAGTTCTTGTATATTGGGTTTTATTCTGTAATGCTGAAGATCAAATTCCTTGGAATGTTGTTAGGCTGTTGGATGAGAGATTTTGTAGGACTAGCATGTGAAGTGGGACACTATAACTTCACTTGGCAATGCAAAGTGTTGCAAATAGGCTAGAGGTGGCATCATTTTAAAAAGCTCTTTTTGTATTTGAACCATTCTAATAATGTGTTTGAACAACTAATAAGTATTCAAgctatttaattaattaattgaatGTGATAGTTCAACTTTTAATAATTCCACATTGTTATAGATCTGAGATGTCTTTTTGCCAGATATAGGTGGTTTATTTACCTTCAGTGAAGGGAGGGTACAGTAGGCCTGAATGCAGATGTAAATATGTAATTGTTAATAGTATGGCTGTATAGAAAATAACCTGTCCCATTAAACCACACATAGTAatgtgtaaattattttatatgTTTAGGTTGAGGAAAATAAATGTTGTAACATTAGTCTGTAACATTGTAATAACACCGTGTTTGTGCCTGATTATGTCATGTCCATATCTCATTTCAGACATAAATTGTCAAACACTGACTTAGTTAATTTTATTAAAAGCATTTTCTCTTCA

Function

NR:

description
transcription cofactor HES-6-like

GO: NA

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589627.2 True 1610 mRNA 0.44 4 26707377 26709568

Neighbor

gene id symbol gene type direction distance location
LOC110508797 LOC106599544 coding upstream 20569 26679791 ~ 26688506 (+)
LOC110508796 LOC106599541 coding upstream 31696 26656615 ~ 26675681 (+)
LOC110508795 LOC106599535 coding upstream 51267 26628352 ~ 26656110 (+)
trnaw-cca-61 NA coding upstream 82064 26625242 ~ 26625313 (+)
LOC110508792 fam227a coding upstream 590278 26099457 ~ 26117099 (+)
LOC110508195 LOC106599554 coding downstream 73357 26782925 ~ 26909897 (+)
LOC110508806 LOC106570393 coding downstream 135466 26845034 ~ 26845490 (+)
xrn1 LOC106599575 coding downstream 359477 27069045 ~ 27136729 (+)
LOC110508820 rab2a coding downstream 621231 27330799 ~ 27345830 (+)
LOC110508821 chd7 coding downstream 638536 27348104 ~ 27454444 (+)
G2122898 NA non-coding upstream 2389 26704770 ~ 26704988 (+)
G2122897 NA non-coding upstream 2677 26704288 ~ 26704700 (+)
G2122853 NA non-coding upstream 87488 26619666 ~ 26619889 (+)
G2122851 NA non-coding upstream 88420 26618587 ~ 26618957 (+)
G2122290 NA non-coding upstream 148955 26557905 ~ 26558422 (+)
G2122902 NA non-coding downstream 2865 26712433 ~ 26712709 (+)
G2122903 NA non-coding downstream 3257 26712825 ~ 26713391 (+)
G2122910 NA non-coding downstream 11637 26721205 ~ 26749161 (+)
G2122921 LOC106599551 non-coding downstream 26424 26735992 ~ 26736575 (+)
G2123026 NA non-coding downstream 65409 26774977 ~ 26812815 (+)
G2122177 NA other upstream 332817 26357538 ~ 26374560 (+)
G2121837 NA other upstream 985703 25720440 ~ 25721674 (+)
LOC110508774 LOC106599485 other upstream 2596667 24101070 ~ 24137027 (+)
G2118574 NA other upstream 3543054 23163866 ~ 23164323 (+)
G2123101 NA other downstream 232632 26942200 ~ 26945187 (+)
G2123174 NA other downstream 391744 27101312 ~ 27104270 (+)
G2123170 NA other downstream 396466 27106034 ~ 27109282 (+)
LOC110508827 LOC106599210 other downstream 1011032 27720549 ~ 27725061 (+)
LOC110508851 LOC106599130 other downstream 1812659 28522217 ~ 28551515 (+)

Expression


Co-expression Network