thpo


Basic Information

Item Value
gene id thpo
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26757098 ~ 26763629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589636.2
GATAACGCGCGCTCTTCGCGCTATGAAGGATGATAACGTGGGAAATTAAAGGGCGCGAGGACTATAGAGGGGACACAACGCACTTCAGATGTGCAGAAAGTAATTCGGAGTGGTTTTATTACCGACTGAAGACAGTAAACATTCCGTTTTTTTAATGGACCACATTAATGGACATCAGACGCAGCCGAGAGGGGCATGGCGTTAAGCAGACTTCTTCTGCTGTGCATGGTAGCCTCTGAGGTGTGGAATGCTGAAACCAGGCCCATAGActttgtgtgtgacagagagtcCAGGAGGGACATGAACACTGTGGCAGAGATGGCGGCTGCTCTGGCTGATTGTGATGCCTTGAAGATGCTCCCGTCCCCCATTCAGCTCCCCTGCATCAAGGTTCACAAGGCTTCCTGGGAGAGGAAATCAGCCCAGGAGAAGAAGGGGGACATAGCTGCAACTCTGAGGGCTTTGTCTAGGAGTGTGAGTGTGGTTAAGACTCTGAGCCAGCCTGGCTGTGCCGCAACTCTGCTGgagagactggagcacactgtcAACAACTACCTACACATAATCACACACCTGGACATCAGGGGGTCTGTGGAGAGCCCGTTGTTTTCAAGTACCGCTGAGAGTACCCACAGCCTGAGCACGGTTCTGTGGACTTTCAGCAGACTGATCACTGGAAAGATGGAATGGCTTATGGCTGACCTGACCCATGGGTGCccctgaagaagaaggaggggagggagctACTTCAGAGTATTGAGACGCACCCAGATAAGTGAGGAGGCTAGGGGGCTGCTGTAGAGTATTGTGATGCACCCAGAGAGGAGAGGCGATGTGGAGAAGGGAGGTGCTCAGAGAGGAGAAATGACATAACCGCCTGAAAGCTGTCACTCACCGAGCAGACCTTTCTCTGGTTGgttacacattacagacagtaAAGACTTGTAATGAAACATGGAGATACGTCACCTTCTGCTGGTCATTATTTGGAATGACAGCTCACTGTTTCCGGCATTCAGCTTAGACTGACTGCATGCTGTTTCTGCAGTAAAACCAGGACAAAAGGAATAAAAATGTACATGCTACATATGAGAGACAATTGACCCAATTGATGGCTTGCATTTCATGGCACCTACCAACAGAGCACTAGGAACACATGTCAAGCATTTGGATGCAATCAGATAATGGTCCACTcttagtattttttatttattgttcACTGTACATTAGTTTTATAACTGTGTTTTTTTATTAATTCATTAATCAGGCTATATAAATATTTGTTTATATTTGTATGTCATTATTAAAATTAAATCCTCAAAGGAAATTTTAACTACACAAAAAAACCTGTCCTCATAAAATGTCAAATTATACACCATGTTTTAATTAAACTTTTCTGAAAGTAATACAAA
>XM_021589638.2
CAATAATAAAACATTAACTCCGGTGGGAGTAGGATAGCCTAGTCAACATATTATCTTCTGAACGTTACATGACTTTTATGTTAATGAGTCATTGTCATAGaacgagagagagcaagcgagcgaAAGAGAGATTTAATTAACGACAGGGGACAGATGAAAGAAGAACAGCAGTTCGGTGATATTCGTTCACGTGACCCTTTGGATTATAGAAAAAGGAAAATTGAGCGCGCTCTGGGATTTGATAACGCGCGCTCTTCGCGCTATGAAGGATGATAACGTGGGAAATTAAAGGGCGCGAGGACTATAGAGGGGACACAACGCACTTCAGATGTGCAGAAAGTAATTCGGAGTGGTTTTATTACCGACTGAAGACAGTAAACATTCCGTTTTTTTAATGGACCACATTAATGGACATCAGACGCAGCCGAGAGGGGCATGGCGTTAAGCAGACTTCTTCTGCTGTGCATGGTAGCCTCTGAGGTGTGGAATGCTGAAACCAGGCCCATAGActttgtgtgtgacagagagtcCAGGAGGGACATGAACACTGTGGCAGAGATGGCGGCTGCTCTGGCCCAGGAGAAGAAGGGGGACATAGCTGCAACTCTGAGGGCTTTGTCTAGGAGTGTGAGTGTGGTTAAGACTCTGAGCCAGCCTGGCTGTGCCGCAACTCTGCTGgagagactggagcacactgtcAACAACTACCTACACATAATCACACACCTGGACATCAGGGGGTCTGTGGAGAGCCCGTTGTTTTCAAGTACCGCTGAGAGTACCCACAGCCTGAGCACGGTTCTGTGGACTTTCAGCAGACTGATCACTGGAAAGATGGAATGGCTTATGGCTGACCTGACCCATGGGTGCccctgaagaagaaggaggggagggagctACTTCAGAGTATTGAGACGCACCCAGATAAGTGAGGAGGCTAGGGGGCTGCTGTAGAGTATTGTGATGCACCCAGAGAGGAGAGGCGATGTGGAGAAGGGAGGTGCTCAGAGAGGAGAAATGACATAACCGCCTGAAAGCTGTCACTCACCGAGCAGACCTTTCTCTGGTTGgttacacattacagacagtaAAGACTTGTAATGAAACATGGAGATACGTCACCTTCTGCTGGTCATTATTTGGAATGACAGCTCACTGTTTCCGGCATTCAGCTTAGACTGACTGCATGCTGTTTCTGCAGTAAAACCAGGACAAAAGGAATAAAAATGTACATGCTACATATGAGAGACAATTGACCCAATTGATGGCTTGCATTTCATGGCACCTACCAACAGAGCACTAGGAACACATGTCAAGCATTTGGATGCAATCAGATAATGGTCCACTcttagtattttttatttattgttcACTGTACATTAGTTTTATAACTGTGTTTTTTTATTAATTCATTAATCAGGCTATATAAATATTTGTTTATATTTGTATGTCATTATTAAAATTAAATCCTCAAAGGAAATTTTAACTACACAAAAAAACCTGTCCTCATAAAATGTCAAATTATACACCATGTTTTAATTAAACTTTTCTGAAAGTAATACAAA

Function

NR:

description
uncharacterized protein LOC110508802 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589636.2 False 1412 mRNA 0.45 5 26757098 26763389
XM_021589638.2 True 1565 mRNA 0.44 4 26757098 26763629

Neighbor

gene id symbol gene type direction distance location
LOC110508801 LOC106599551 coding downstream 15227 26714593 ~ 26741871 (-)
LOC110508799 LOC106599547 coding downstream 54180 26695459 ~ 26702918 (-)
trnap-agg-158 NA coding downstream 130546 26626481 ~ 26626552 (-)
trnai-aau-86 NA coding downstream 132098 26624927 ~ 26625000 (-)
trnam-cau-4 NA coding downstream 137734 26619292 ~ 26619364 (-)
LOC110508805 LOC106599556 coding upstream 74313 26837942 ~ 26842853 (-)
LOC118944878 NA coding upstream 149299 26912928 ~ 26920425 (-)
LOC110508196 LOC100380746 coding upstream 161640 26925269 ~ 26973311 (-)
LOC118944904 NA coding upstream 164025 26927654 ~ 26927784 (-)
LOC118944898 NA coding upstream 164655 26928284 ~ 26928407 (-)
G2123004 NA non-coding downstream 34905 26720278 ~ 26722193 (-)
G2122977 NA non-coding downstream 44169 26712155 ~ 26712929 (-)
G2122989 NA non-coding downstream 63847 26693001 ~ 26693251 (-)
G2122987 NA non-coding downstream 67390 26689494 ~ 26689708 (-)
G2123218 NA non-coding upstream 42562 26806191 ~ 26831467 (-)
G2123273 LOC106599558 non-coding upstream 144324 26907953 ~ 26911066 (-)
G2123275 NA non-coding upstream 148130 26911759 ~ 26912063 (-)
G2123281 NA non-coding upstream 157777 26921406 ~ 26921695 (-)
LOC110508791 LOC106568850 other downstream 687889 25677135 ~ 26069268 (-)
G2122515 NA other downstream 806645 25946733 ~ 25950453 (-)
G2121457 NA other downstream 1482472 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 1608578 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2022111 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1781312 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1863426 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1899079 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1928510 28692139 ~ 28692470 (-)
G2125723 NA other upstream 2121839 28885468 ~ 28885854 (-)

Expression


Co-expression Network