LOC110508805 (LOC106599556)


Basic Information

Item Value
gene id LOC110508805
gene name LOC106599556
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26837942 ~ 26842853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965954.1
AGCCCTGAGCAAGTCCTGTGGATATGATTGTGTAGTATAATGGCATCATCAGCAAggtgtgtagttgtgttgctGGCTGTGTTTGTGCGCTGCAGTAGTGCAAATACTTGGGGAATGCTACTACAGAAGCACCAGGCTCCAGTTGTTCAGCAGGCCCAGAAGGTGAGGCAGCAACCTCCAACCAGGCCAGTAACATATGACCAGCAGGCCAAGAAGCTGAAAAACCAGCCCCAGTGGCCACCTCAGTGGGTTACCCAGGGACCTGATGCCACAACTCCTATTGAGAAATGCCAAGTGAAAGAGGAAGAGCGACTTACTTGTGGTGTCCCTGATCTTACTCTTGCTCAATGTGAGGCAATCAACTGCTGCTTTGATGAGTGGCGGTGCTACTATGGGAAAGCAGTAACTGTACAGTGCACCAGAGATGGTCAGTTTCTTGTTGTGGTGGCCAGGGATGCCACTCTGCCCAACCTGGACCTTGATAGCATCAGTCTGCTTGGACCGCAAAATGCCCTCTGTAAGCCTGTTGGCACCACTAAAGCCTTTGCCATATACCAGTTCCCTGTCACAGCCTGTGGCACCACTCTCATGGAGGAAAGTGGCTATGTAGTCTATGAGAACAAGATGATATCTTCCTATGAAGTGGAGATTGGACCTCGAGGCTCAATCACTAGAGACAGCCACTTTGAGCTGCAGTTCCAGTGTAAGTACTCTGACACTGCGGTGGAGTTTTTGGTGGTTGAGGTGAATGCTCTTCCTCCCCCTGCTCCAGTCGCTGCTACTGGACCTGTCCGAGTAGCGCTCCGGCTGGCCAGCGGACAATGTTACAATAAGGGATGTGTGGAAGAAGTAGAAGCTTACAGGTCCTACTACAGTGAAGCAGACTACCCAGTTGCCAAGCTCCTGAAGGATCCAGTGTATGCAGAGGTTCACATCTTGGGGAGGACCGACTCTAACCTGGTCCTGAATCTGGACTACTGCTGGGCCACCTCCACCCCCAGTCCCCTCAGCTTGCCCAAGTGGGACCTCCTGGTTGATGGGTGTCCGTACCAGGATGACCGTTACCTGACCAATGTAATCCCTGTGGATGGCTCCTCTGGCCTTGAGTTCCTGACCCACTACAAACGCTTCGCGGTCAAGATGTTCACCTTTGTGGATGCAGACACTTTGGCCCCTTTGAAGGACAGGGTCTTCATCCACTGTAGTACAGAGGTGTGCCACCCTACTAGGACCCACTTCTGTCAACAGAGCTGCAACAGGCAAAGGAGAGATGTGGCTGCAGTGAATTCTGTGGCTGGCGAGACCGTGGTGTCCAGTGGGGAGCTCATTCTGACCTGACCATAACTACCTTCCACCTGGCAGGCCTGAAGAAATACTTCTGATCTACTTCAGCTTGGGATGAAGGCCTCACTCTTTGACCTTGTAGCATACACACAATACATATTGTGACTTGTAATCCTTTGGCTTGTTTAATACAATGCTTGACTTTGAAATATCT

Function

NR:

description
zona pellucida sperm-binding protein 4-like

GO: NA

KEGG:

id description
K19926 ZP1; zona pellucida sperm-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965954.1 True 1498 mRNA 0.51 8 26837942 26842853

Neighbor

gene id symbol gene type direction distance location
thpo NA coding downstream 74313 26757098 ~ 26763629 (-)
LOC110508801 LOC106599551 coding downstream 96071 26714593 ~ 26741871 (-)
LOC110508799 LOC106599547 coding downstream 135024 26695459 ~ 26702918 (-)
trnap-agg-158 NA coding downstream 211390 26626481 ~ 26626552 (-)
trnai-aau-86 NA coding downstream 212942 26624927 ~ 26625000 (-)
LOC118944878 NA coding upstream 70075 26912928 ~ 26920425 (-)
LOC110508196 LOC100380746 coding upstream 82416 26925269 ~ 26973311 (-)
LOC118944904 NA coding upstream 84801 26927654 ~ 26927784 (-)
LOC118944898 NA coding upstream 85431 26928284 ~ 26928407 (-)
tfa LOC100136298 coding upstream 131585 26974438 ~ 26998393 (-)
G2123218 NA non-coding downstream 6475 26806191 ~ 26831467 (-)
G2123004 NA non-coding downstream 115749 26720278 ~ 26722193 (-)
G2122977 NA non-coding downstream 125013 26712155 ~ 26712929 (-)
G2122989 NA non-coding downstream 144691 26693001 ~ 26693251 (-)
G2123273 LOC106599558 non-coding upstream 65100 26907953 ~ 26911066 (-)
G2123275 NA non-coding upstream 68906 26911759 ~ 26912063 (-)
G2123281 NA non-coding upstream 78553 26921406 ~ 26921695 (-)
G2123290 NA non-coding upstream 93592 26936445 ~ 26937469 (-)
LOC110508791 LOC106568850 other downstream 768733 25677135 ~ 26069268 (-)
G2122515 NA other downstream 887489 25946733 ~ 25950453 (-)
G2121457 NA other downstream 1563316 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 1689422 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2102955 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1702088 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1784202 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1819855 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1849286 28692139 ~ 28692470 (-)
G2125723 NA other upstream 2042615 28885468 ~ 28885854 (-)

Expression


Co-expression Network