tfa (LOC100136298)


Basic Information

Item Value
gene id tfa
gene name LOC100136298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26974438 ~ 26998393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965875.1
CTAAGTCAGCCCACCGTGGATCCCAGCCTATTGGTCTTCTATAAAAGCCAGAGTTGCCTTCTAAAACGGCCTGCTTTTTCACTCCGGGAATTGTTGACTTGGAGACTTCGAGAACATGAAACTGCTTCTCGTCTCAGCGCTGCTGGGGTGCCTCGCATTTATTCTATCCTCAGCTACGGTGTATGCTGCCCCAGCTGAGGGAATGGTTAGATGGTGCGTAAAGTCGGACAAAGAGCTGCAGAAATGCCACGACCTCGCAGCCAATGTGGCGCAGTTTTCATGCGTGAGGAGGGACAACTCTTTGGAATGCATCCAAGCCATCAAGaGGGAAGAGGCTGATGCTATCACTCTGGATGGAGGAGATATTTACATAGCTGGCCTCCACAACTACAACCTGCAGCCCATCATTGCAGAGGACTATGGTGAGGACTCTGACACCTGCTATTATGCTGTGGCCGTGGCCAAAAAGGGCACTGACTTTGGGTTCCTCAACCTCCGTGGCAAGAAGTCCTGCCACACCGGGTTGGGCAAATCTGCAGGCTGGAACATTCCCATCGGTACCCTGGTGACTGTGGGCCAGATCCAATGGGCCGGCATCGAGGACAGACCTGTGGAGTCGGCGGTGAGCGACTTCTTCAATGCCAGCTGTGCTCCAGGAGCCAATAAGGATTCTAAACTGTGCCAGTTGTGTAAGGTAGACTGCTCCAGATCTCACAATGAGCCCTACTATGACTATGCCGGGGCCTTCCAGTGCCTGAAGGATGGAGCAGGAGAGGTTGCCTTCATCAAGCACCTGACTGTACCTGCCGCAGAGAAGGCAAGCTATGAGTTGCTGTGCAAGGATAACACCAGAGCTCCCATCGACAGCTACAAGACCTGCCACCTGTCCAGAGTACCCGCCCACGCTGTGGTCAGCCGCAAGAACCCCGAGCTGGCCAATCGCATCTACAGCAAGCTGATGGCCGTCGAGAACTTCAACCTGTTCTCCTCCGATGGTTATGCTGCCAAGAACCTGATGTTCAAGGACTCCACTCAGAATCTAGTACAGCTGCCAATGACCACCGACTCCTTCCTCTACCTGGGAGCTGAGTACATGAGCACTATACGCTCCCTGACAAAAGCGCAGGCCACAGGTGCCACCTCCAGGGCCATCAAATGGTGTGCCGTGGGCCATAACGAGAAAGTCAAGTGTGACGCCTGGACAATCAACAGCTTCACAGATGGTGACTCCAGGATCGAATGCCAGGACGCACCCACAGTGGATGAATGCATCAAGAAGATCATGCGTAAAGAGGCAGATGCCATAGCGGTGGATGGTGGGGAGGTGTTCACTGCTGGAAAATGTGGTCTGGTCcctgtcatggtggagcagtatGATGcagttCAGTGCAGCGCCCCTGGTGAGGCGTCATCCTACTTTGCGGTGGCGGTGGCAAAGAAGGGATCTGGGGTGACCTGGAATACCCTGCAGGGCAAGAGGTCATGCCACACCGGCTTGGGCAGGACCGCAGGCTGGAACATACCCATGGGTCTTATCCATAAGGAGACTAACAACTGCGACTTCACCACATACTTCAGTAAGGGCTGTGCTCCTGGATTTGAGGTGGATTCTCCTTTCTGTGCCCAGTGTAAGGGCGGTGGGCAGTCCGTGGGAGGAGATAGGGCCAGGTGCATGGCCAGCTCTGAAGAGCAGTACTACGGCTATACCGGAGCATTCAGATGTCTGGTTGAAGGTGCTGGAGATGTTGCCTTCATTAAACACACTATTGTACCAGAGAACACTGATGGTAGTGGTCCAGTTTGGGCACAGGACCTGAAGTCCTCTGACTTTGAACTACTCTGCCAGGATGGTACTACCCAGCCAGTCACAAAGTTCCGTGACTGCCACCTGGCCAAGGTGCCCGCCCATGCTGTGATAACACGCCCAGAGTCCCGTGGAGAGGTTGTGTCCATCCTTCTGGAGCAGCAGGCCAGGTTCGGCTCAAGCGGCAGCGATTCCTCATTTAATATGTTCCAGTCAGATTTGGGAAAGAACTCGCTCTTCAAGGATTCCACAAAGTGTCTCCAGGAGATCCCAAGCGGCACCAAATTCCAGGATTTCCTTGGGGAAGAGTACATGATCGCCATGCAATCGCTCAGGGAGTGCTCCAACAGTACCTCAGGTAGAGTCCCATTACGTGACAACcttacacacacatgtgcacacacactgtataaagGACATATCTGCATCTGAAGCTAAAACCTGTTC
>XM_036965876.1
CTAAGTCAGCCCACCGTGGATCCCAGCCTATTGGTCTTCTATAAAAGCCAGAGTTGCCTTCTAAAACGGCCTGCTTTTTCACTCCGGGAATTGTTGACTTGGAGACTTCGAGAACATGAAACTGCTTCTCGTCTCAGCGCTGCTGGGGTGCCTCGCTACGGTGTATGCTGCCCCAGCTGAGGGAATGGTTAGATGGTGCGTAAAGTCGGACAAAGAGCTGCAGAAATGCCACGACCTCGCAGCCAATGTGGCGCAGTTTTCATGCGTGAGGAGGGACAACTCTTTGGAATGCATCCAAGCCATCAAGaGGGAAGAGGCTGATGCTATCACTCTGGATGGAGGAGATATTTACATAGCTGGCCTCCACAACTACAACCTGCAGCCCATCATTGCAGAGGACTATGGTGAGGACTCTGACACCTGCTATTATGCTGTGGCCGTGGCCAAAAAGGGCACTGACTTTGGGTTCCTCAACCTCCGTGGCAAGAAGTCCTGCCACACCGGGTTGGGCAAATCTGCAGGCTGGAACATTCCCATCGGTACCCTGGTGACTGTGGGCCAGATCCAATGGGCCGGCATCGAGGACAGACCTGTGGAGTCGGCGGTGAGCGACTTCTTCAATGCCAGCTGTGCTCCAGGAGCCAATAAGGATTCTAAACTGTGCCAGTTGTGTAAGGTAGACTGCTCCAGATCTCACAATGAGCCCTACTATGACTATGCCGGGGCCTTCCAGTGCCTGAAGGATGGAGCAGGAGAGGTTGCCTTCATCAAGCACCTGACTGTACCTGCCGCAGAGAAGGCAAGCTATGAGTTGCTGTGCAAGGATAACACCAGAGCTCCCATCGACAGCTACAAGACCTGCCACCTGTCCAGAGTACCCGCCCACGCTGTGGTCAGCCGCAAGAACCCCGAGCTGGCCAATCGCATCTACAGCAAGCTGATGGCCGTCGAGAACTTCAACCTGTTCTCCTCCGATGGTTATGCTGCCAAGAACCTGATGTTCAAGGACTCCACTCAGAATCTAGTACAGCTGCCAATGACCACCGACTCCTTCCTCTACCTGGGAGCTGAGTACATGAGCACTATACGCTCCCTGACAAAAGCGCAGGCCACAGGTGCCACCTCCAGGGCCATCAAATGGTGTGCCGTGGGCCATAACGAGAAAGTCAAGTGTGACGCCTGGACAATCAACAGCTTCACAGATGGTGACTCCAGGATCGAATGCCAGGACGCACCCACAGTGGATGAATGCATCAAGAAGATCATGCGTAAAGAGGCAGATGCCATAGCGGTGGATGGTGGGGAGGTGTTCACTGCTGGAAAATGTGGTCTGGTCcctgtcatggtggagcagtatGATGcagttCAGTGCAGCGCCCCTGGTGAGGCGTCATCCTACTTTGCGGTGGCGGTGGCAAAGAAGGGATCTGGGGTGACCTGGAATACCCTGCAGGGCAAGAGGTCATGCCACACCGGCTTGGGCAGGACCGCAGGCTGGAACATACCCATGGGTCTTATCCATAAGGAGACTAACAACTGCGACTTCACCACATACTTCAGTAAGGGCTGTGCTCCTGGATTTGAGGTGGATTCTCCTTTCTGTGCCCAGTGTAAGGGCGGTGGGCAGTCCGTGGGAGGAGATAGGGCCAGGTGCATGGCCAGCTCTGAAGAGCAGTACTACGGCTATACCGGAGCATTCAGATGTCTGGTTGAAGGTGCTGGAGATGTTGCCTTCATTAAACACACTATTGTACCAGAGAACACTGATGGTAGTGGTCCAGTTTGGGCACAGGACCTGAAGTCCTCTGACTTTGAACTACTCTGCCAGGATGGTACTACCCAGCCAGTCACAAAGTTCCGTGACTGCCACCTGGCCAAGGTGCCCGCCCATGCTGTGATAACACGCCCAGAGTCCCGTGGAGAGGTTGTGTCCATCCTTCTGGAGCAGCAGGCCAGGTTCGGCTCAAGCGGCAGCGATTCCTCATTTAATATGTTCCAGTCAGATTTGGGAAAGAACTCGCTCTTCAAGGATTCCACAAAGTGTCTCCAGGAGATCCCAAGCGGCACCAAATTCCAGGATTTCCTTGGGGAAGAGTACATGATCGCCATGCAATCGCTCAGGGAGTGCTCCAACAGTACCTCAGGTAGAGTCCCATTACGTGACAACcttacacacacatgtgcacacacactgtataaagGACATATCTGCATCTGAAGCTAAAACCTGTTC
>NM_001124552.1
GGAATTGTTGACTTGGAGACTTCGAGAACATGAAACTGCTTCTCGTCTCAGCGCTGCTGGGGTGCCTCGCTACGGTGTATGCTGCCCCAGCTGAGGGAATGGTTAGATGGTGCGTAAAGTCGGACAAAGAGCTGCAGAAATGCCACGACCTCGCAGCCAATGTGGCGCAGTTTTCATGCGTGAGGAGGGACAACTCTTTGGAATGCATCCAAGCCATCAAGaGGGAAGAGGCTGATGCTATCACTCTGGATGGAGGAGATATTTACATAGCTGGCCTCCACAACTACAACCTGCAGCCCATCATTGCAGAGGACTATGGTGAGGACTCTGACACCTGCTATTATGCTGTGGCCGTGGCCAAAAAGGGCACTGACTTTGGGTTCCTCAACCTCCGTGGCAAGAAGTCCTGCCACACCGGGTTGGGCAAATCTGCAGGCTGGAACATTCCCATCGGTACCCTGGTGACTGTGGGCCAGATCCAATGGGCCGGCATCGAGGACAGACCTGTGGAGTCGGCGGTGAGCGACTTCTTCAATGCCAGCTGTGCTCCAGGAGCCAATAAGGATTCTAAACTGTGCCAGTTGTGTAAGGTAGACTGCTCCAGATCTCACAATGAGCCCTACTATGACTATGCCGGGGCCTTCCAGTGCCTGAAGGATGGAGCAGGAGAGGTTGCCTTCATCAAGCACCTGACTGTACCTGCCGCAGAGAAGGCAAGCTATGAGTTGCTGTGCAAGGATAACACCAGAGCTCCCATCGACAGCTACAAGACCTGCCACCTGTCCAGAGTACCCGCCCACGCTGTGGTCAGCCGCAAGAACCCCGAGCTGGCCAATCGCATCTACAGCAAGCTGATGGCCGTCGAGAACTTCAACCTGTTCTCCTCCGATGGTTATGCTGCCAAGAACCTGATGTTCAAGGACTCCACTCAGAATCTAGTACAGCTGCCAATGACCACCGACTCCTTCCTCTACCTGGGAGCTGAGTACATGAGCACTATACGCTCCCTGACAAAAGCGCAGGCCACAGGTGCCACCTCCAGGGCCATCAAATGGTGTGCCGTGGGCCATAACGAGAAAGTCAAGTGTGACGCCTGGACAATCAACAGCTTCACAGATGGTGACTCCAGGATCGAATGCCAGGACGCACCCACAGTGGATGAATGCATCAAGAAGATCATGCGTAAAGAGGCAGATGCCATAGCGGTGGATGGTGGGGAGGTGTTCACTGCTGGAAAATGTGGTCTGGTCcctgtcatggtggagcagtatGATGcagttCAGTGCAGCGCCCCTGGTGAGGCGTCATCCTACTTTGCGGTGGCGGTGGCAAAGAAGGGATCTGGGGTGACCTGGAATACCCTGCAGGGCAAGAGGTCATGCCACACCGGCTTGGGCAGGACCGCAGGCTGGAACATACCCATGGGTCTTATCCATAAGGAGACTAACAACTGCGACTTCACCACATACTTCAGTAAGGGCTGTGCTCCTGGATTTGAGGTGGATTCTCCTTTCTGTGCCCAGTGTAAGGGCGGTGGGCAGTCCGTGGGAGGAGATAGGGCCAGGTGCATGGCCAGCTCTGAAGAGCAGTACTACGGCTATACCGGAGCATTCAGATGTCTGGTTGAAGGTGCTGGAGATGTTGCCTTCATTAAACACACTATTGTACCAGAGAACACTGATGGTAGTGGTCCAGTTTGGGCACAGGACCTGAAGTCCTCTGACTTTGAACTACTCTGCCAGGATGGTACTACCCAGCCAGTCACAAAGTTCCGTGACTGCCACCTGGCCAAGGTGCCCGCCCATGCTGTGATAACACGCCCAGAGTCCCGTGGAGAGGTTGTGTCCATCCTTCTGGAGCAGCAGGCCAGGTTCGGCTCAAGCGGCAGCGATTCCTCATTTAATATGTTCCAGTCAGATTTGGGAAAGAACTCGCTCTTCAAGGATTCCACAAAGTGTCTCCAGGAGATCCCAAGCGGCACCAAATTCCAGGATTTCCTTGGGGAAGAGTACATGATCGCCATGCAATCGCTCAGGGAGTGCTCCAACAGTACCTCAGATTTGGAGAAGGCATGCACTTTCCATTCCTGCCAGCAGAAGAAATAGTGGAGCTTACCTTTGtggcaaacacacactctctctcccaacccctcAACACTCAAGAAACCTAAGCAGTGACTGTAGATGAAACTGTGAATTCAGTTGAGAAGTTTTGTGCAAAACAATCTTGTATGAAAATGTGCTTTTACGTTCCTTTGATAAAACAAGTGTTAAATGAATTACGCTAAATTACTACTACTGTTTACCTTGTAGTTGAATTGTTAACCAAACCATAACCAGTTCTTGAAGTATTTCTAGGAGATTACAGGTTTCTGAAATAATAAAATCACCTTTTCTATTCGCCGTCCTGCTCATAAATTGCAGTCTAACCAAACACTGAGGTCCAATTCacatttgttttggttgttgttcAATGAATTGGCCAACAGCTTTGGCTTACTTTCTTGAAATAAAGTGTACCCTTTTTCACAAGCTA
>XM_021588578.2
TAAGTCAGCCCACCGTGGATCCCAGCCTATTGGTCTTCTATAAAAGCCAGAGTTGCCTTCTAAAACGGCCTGCTTTTTCACTCCGGGAATTGTTGACTTGGAGACTTCGAGAACATGAAACTGCTTCTCGTCTCAGCGCTGCTGGGGTGCCTCGCATTTATTCTATCCTCAGCTACGGTGTATGCTGCCCCAGCTGAGGGAATGGTTAGATGGTGCGTAAAGTCGGACAAAGAGCTGCAGAAATGCCACGACCTCGCAGCCAATGTGGCGCAGTTTTCATGCGTGAGGAGGGACAACTCTTTGGAATGCATCCAAGCCATCAAGaGGGAAGAGGCTGATGCTATCACTCTGGATGGAGGAGATATTTACATAGCTGGCCTCCACAACTACAACCTGCAGCCCATCATTGCAGAGGACTATGGTGAGGACTCTGACACCTGCTATTATGCTGTGGCCGTGGCCAAAAAGGGCACTGACTTTGGGTTCCTCAACCTCCGTGGCAAGAAGTCCTGCCACACCGGGTTGGGCAAATCTGCAGGCTGGAACATTCCCATCGGTACCCTGGTGACTGTGGGCCAGATCCAATGGGCCGGCATCGAGGACAGACCTGTGGAGTCGGCGGTGAGCGACTTCTTCAATGCCAGCTGTGCTCCAGGAGCCAATAAGGATTCTAAACTGTGCCAGTTGTGTAAGGTAGACTGCTCCAGATCTCACAATGAGCCCTACTATGACTATGCCGGGGCCTTCCAGTGCCTGAAGGATGGAGCAGGAGAGGTTGCCTTCATCAAGCACCTGACTGTACCTGCCGCAGAGAAGGCAAGCTATGAGTTGCTGTGCAAGGATAACACCAGAGCTCCCATCGACAGCTACAAGACCTGCCACCTGTCCAGAGTACCCGCCCACGCTGTGGTCAGCCGCAAGAACCCCGAGCTGGCCAATCGCATCTACAGCAAGCTGATGGCCGTCGAGAACTTCAACCTGTTCTCCTCCGATGGTTATGCTGCCAAGAACCTGATGTTCAAGGACTCCACTCAGAATCTAGTACAGCTGCCAATGACCACCGACTCCTTCCTCTACCTGGGAGCTGAGTACATGAGCACTATACGCTCCCTGACAAAAGCGCAGGCCACAGGTGCCACCTCCAGGGCCATCAAATGGTGTGCCGTGGGCCATAACGAGAAAGTCAAGTGTGACGCCTGGACAATCAACAGCTTCACAGATGGTGACTCCAGGATCGAATGCCAGGACGCACCCACAGTGGATGAATGCATCAAGAAGATCATGCGTAAAGAGGCAGATGCCATAGCGGTGGATGGTGGGGAGGTGTTCACTGCTGGAAAATGTGGTCTGGTCcctgtcatggtggagcagtatGATGcagttCAGTGCAGCGCCCCTGGTGAGGCGTCATCCTACTTTGCGGTGGCGGTGGCAAAGAAGGGATCTGGGGTGACCTGGAATACCCTGCAGGGCAAGAGGTCATGCCACACCGGCTTGGGCAGGACCGCAGGCTGGAACATACCCATGGGTCTTATCCATAAGGAGACTAACAACTGCGACTTCACCACATACTTCAGTAAGGGCTGTGCTCCTGGATTTGAGGTGGATTCTCCTTTCTGTGCCCAGTGTAAGGGCGGTGGGCAGTCCGTGGGAGGAGATAGGGCCAGGTGCATGGCCAGCTCTGAAGAGCAGTACTACGGCTATACCGGAGCATTCAGATGTCTGGTTGAAGGTGCTGGAGATGTTGCCTTCATTAAACACACTATTGTACCAGAGAACACTGATGGTAGTGGTCCAGTTTGGGCACAGGACCTGAAGTCCTCTGACTTTGAACTACTCTGCCAGGATGGTACTACCCAGCCAGTCACAAAGTTCCGTGACTGCCACCTGGCCAAGGTGCCCGCCCATGCTGTGATAACACGCCCAGAGTCCCGTGGAGAGGTTGTGTCCATCCTTCTGGAGCAGCAGGCCAGGTTCGGCTCAAGCGGCAGCGATTCCTCATTTAATATGTTCCAGTCAGATTTGGGAAAGAACTCGCTCTTCAAGGATTCCACAAAGTGTCTCCAGGAGATCCCAAGCGGCACCAAATTCCAGGATTTCCTTGGGGAAGAGTACATGATCGCCATGCAATCGCTCAGGGAGTGCTCCAACAGTACCTCAGATTTGGAGAAGGCATGCACTTTCCATTCCTGCCAGCAGAAGAAATAGTGGAGCTTACCTTTGtggcaaacacacactctctctcccaacccctcAACACTCAAGAAACCTAAGCAGTGACTGTAGATGAAACTGTGAATTCAGTTGAGAAGTTTTGTGCAAAACAATCTTGTATGAAAATGTGCTTTTACGTTCCTTTGATAAAACAAGTGTTAAATGAATTACGCTAAATTACTACTACTGTTTACCTTGTAGTTGAATTGTTAACCAAACCATAACCAGTTCTTGAAGTATTTCTAGGAGATTACAGGTTTCTGAAATAATAAAATCACCTTTTCTATTCGCCGTCCTGCTCATAAATTGCAGTCTAACCAAACACTGAGGTCCAATTCacatttgttttggttgttgttcAATGAATTGGCCAACAGCTTTGGCTTACTTTCTTGAAATAAAGTGTACCCTTTTTCACAAGC

Function

NR:

description
transferrin isoform X1

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K14736 TF; transferrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965875.1 False 2251 mRNA 0.54 17 26974438 26998393
XM_036965876.1 False 2233 mRNA 0.54 17 26974438 26998393
NM_001124552.1 False 2535 mRNA 0.51 17 26991264 26998307
XM_021588578.2 True 2636 mRNA 0.51 17 26991266 26998392

Neighbor

gene id symbol gene type direction distance location
LOC110508196 LOC100380746 coding downstream 1127 26925269 ~ 26973311 (-)
LOC118944898 NA coding downstream 46031 26928284 ~ 26928407 (-)
LOC118944904 NA coding downstream 46654 26927654 ~ 26927784 (-)
LOC118944878 NA coding downstream 54013 26912928 ~ 26920425 (-)
LOC110508805 LOC106599556 coding downstream 131585 26837942 ~ 26842853 (-)
LOC110508807 LOC106599567 coding upstream 35303 27033696 ~ 27046481 (-)
ppp1r7 ppp1r7 coding upstream 52865 27051258 ~ 27055816 (-)
tox LOC106599578 coding upstream 143151 27141544 ~ 27243306 (-)
LOC110508819 LOC106599582 coding upstream 305352 27303745 ~ 27316749 (-)
LOC110508822 LOC106599166 coding upstream 478630 27477023 ~ 27501636 (-)
G2123290 NA non-coding downstream 36969 26936445 ~ 26937469 (-)
G2123281 NA non-coding downstream 52743 26921406 ~ 26921695 (-)
G2123275 NA non-coding downstream 62375 26911759 ~ 26912063 (-)
G2123273 LOC106599558 non-coding downstream 63372 26907953 ~ 26911066 (-)
G2123309 NA non-coding upstream 25497 27023890 ~ 27075887 (-)
G2123334 LOC106599575 non-coding upstream 94460 27092853 ~ 27093157 (-)
G2123349 NA non-coding upstream 141549 27139942 ~ 27140186 (-)
G2123449 NA non-coding upstream 217385 27215778 ~ 27216140 (-)
LOC110508791 LOC106568850 other downstream 905229 25677135 ~ 26069268 (-)
G2122515 NA other downstream 1023985 25946733 ~ 25950453 (-)
G2121457 NA other downstream 1699812 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 1825918 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2239451 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1546548 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1628662 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1664315 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1693746 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1887075 28885468 ~ 28885854 (-)

Expression


Co-expression Network