LOC110508807 (LOC106599567)


Basic Information

Item Value
gene id LOC110508807
gene name LOC106599567
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27033696 ~ 27046481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589642.2
TTAAATTTTCCTTTAATTCTTGCAATGTTCATTGTTAATGAGTTATGTTCCAAAAATGGTCATGTCGCCCAAGCATCACAGAAAGCTGCGCAGGAAACTGACGGGGCATCAGTGCTTACTGCCCCCTGTCATCAAGGGAAAAACGAACTGGAGCATTCGAccgtcaagtgtgtgtgtgatcaccAGACTGGAGCATCTAACTTAACAAAAATGATCCACAGGAAAGACTAGGATTGTTTTGGGATGATGCCtgacgcaaaaaaaaaaaatgctttctaGAGTTTCCACAAAAGTAAGACTCTGGAGGCgcaatagctaacgttagccatgtTGTCTCGTTTTAGTGGAATGGGCGTTGGGTATAACGTCTATCTAGTCGAGCTAACCTAGCCTAGGTTCCGCCTTATAACGCAATGGTGGCTGGAACATCTCCCGCCTGTCATGTTCAAGAAGCACcggaccagcctctctctgctaAAGTTACACAAAGTTTGCATGGCTGAGATGGTGCCACAGAGAGTGTGGGGAAGCATATGCTAGAAGCATGCAACAACAATCTAGAAATGGCAGTGACCATGTTCCTGGATGGAGGGGGGATCGCAGAGGAGCCCAGCACCAGCTCCAGTTCAGCAGGGACCTCCAGCAGCAGAGCTCCCCCCGCAGATGACCAAGTGCGGGCACCCATCCCTCAGAAGCAGGACATACTGGTAGAGCCAGAGCCTATGTTTGGAGCACCAAAGCGACGAAGACCTGCCCGGTCCATATTTGACGGTTTTAGGGACTTCCAAACAGAAACAATCCGCCAGGAGCAGGAGCTGAGGAACGGCAGCGCGGTGGACAAGAAGCTCAGCACCCTGGCGGATCTGTTCCGGCCCCCCGTTGAGCTCATGCACAAAGGCAGCTTTGAGACGGCGAAGGACTGTGGTCAGCTGGAGAACAAGTGGCTGATGATCAACATCCAGAATGTGCAGGACTTTGCCTGCCAGTGTCTCAACAGAGACGTGTGGAGCAACGACGCGGTCCGGACCATCATCAGGGAGCACTTCATATTCTGGCAGGTGTACCATGACAGTGAAGAGGGCCAGAGGTATATCCAGTTCTACAAGCTCAATAAGTTTCCCTATATCTCCATTTTGGATCCCCGGACTGGTCAGAAGATGGTGGAGTGGAACCAGTTGGACGTTGCGTCATTTCTGGAACAGGTGACGGGCTTCTTGACGGAACACGGCCAGCTAGACGGCCCGGCGTCCAGCCACCCGCCCCCGGCCAAACGGGCCCGCTCCGAAAGTCTGATAGACGCCAGTGAGGACAGCCAGTTGGAGGCAGCCATCAAAGCCTCTCTCCAGGAGACCCACTATGAGTCGTCCTCCGCCCCCGACCTCCCCGACTCCCCCCACTCTGTAGAGGTAGACTCGGACGGAGACTCAGACGAGGAGCCCTTCTCCGACAGCGAGGGCCTCATCTCTGTCGACGGCTCGGATAACGAGACAACAGAACCACAGGAGGGCAGCTCCTGCTCCACAGGCGGAGACACCCCTCCTGGACCAGCCCCTCCCACATCTGCAGCTGTAGCCCCCCAGCCCCCGCCACAGCCGGACAGCCCACCTGCCCGTCACAGGAAGTCCCCCCACAACGAGAACAGCCACAGGAAAGAGGAGAGCAAAAAGAACCACCTGGAGCCTCTGGCGGCTGCGCCGGCCCGCTCCCAGGCCGACCCAGACTCAGAGCATCGTTCTGGGGAGAACCATCGCACCGCAACAGGCCAAAGCTCCAAATCTGTTAAGACGGAAACCTCCGACCTCGACTGCCTTGATGACAATGGTCCCAAGGCCAGACTGATGCTGCGCTAtccagacggacagagagagcagaTCGCCCTGTCGTCCAAGGCCAAGCTTATGgctCTGGTTAGACATGTCCAGTCGAAGGGCTACCCCAACGAACGCTTCGAGCTCGTCACCAACTTCCCCCGACGGAAGCTGGCCCACTTGGACTATGACGTCACACTGCAGGAGGCAGGGCTTTGTCCACAGGAGACTGTATTTGTGCAGGAAAGGAACTAAGCCATGCATTTTCTATCTTCAGACCACGCCCATTTCACCAGTGACCCGGGAGGACGTTACAGGCCGCTACTCCTGGGCTTTTTTTATTTTGGAATTAGACCATGCCCCTATTTGGGGACAACGAACTGTGGATGAACTTCATTACCCATCATTCCACTGGGAGGAAGTGACTGGCCTGTGTACTCTTTTTAGTAGGCATTGTTGTTCATCGTCAATTACCGAATGGATTCTATTCTGATTTTAGTTTTATTCTGAGGTAATAAACCAATCGGAGTAGAACACCTTAATGATACTGTTACAAATAAGCTGAGGCCCCTTAATAATGATCAGAGCTGGCATCAGAGTTGGCTCAGGAAAACTTTACAGACTATTATCCATAAAGGATGTCAAATGTCAGATATTTTTTTGAAGTTAATACTTATTTTTTGATTCATGAACACCTACAGCCAGGTAAAGGAGCGACTTGAACTCTGATTGGTCCCAAATTTGCTCTTCTACGTGTTGATTGGGTGAGGAGGGGACTTTGAATACAGGAATTGATGGAGAGGGGTGTAGGGTCGTTCAAgggataattttttttttttggggggggggggttcctcaaCTGTCAACCTGCACTACAGGAGTGGTGTAGCGATTGACATTTAGTCTTAgtcggtatatatatatatacacacctcttTTTTTTCTACCCCATTTCCAAGAAAAGATGCTGAAATATAATCATACAAACAAAGGGAAACTTGTTTGCTCTATTCCATTTCTACCATGTATTTGTCTATCTGCAATCTGTCTAAATTGTGACCACAACCTCAAAAGTATAGTGTTGGTGATGATGATCATTTCTTGATACCTCCGCCCCAATGTACCGAACGATCTGGGTCAGTGTAAGCAATGGGTGGTGCCGTTTGGTGTTATCACTCTTACTAGCCCAACTATAACTAATATCTATTTTGTCTAGTCAGATATGAGGGAGAGGTAACAAGTAGATTCTGATTGGGGCCATGTCCAATATTACTAATCTGCTTTAAACCTTTACCCACAGACTGGATATGTCTGTCACAGGGTTTCATCAACTTAGCTGTGAGCTAATAATCATAACCGTGGGAGAGCTGTCAAGCTGTGGAGTTCTGGTCTGAATGAGAAGTTTAACATGGGGTCTTGTTGCATACAACTGTCTTGAATACATTTTGGAGTATTTGTATGGCGATTTCTAGATTCCTAGAACCCAGTACATTGAATTTTATCCAAATCTAATTCAAATGTCAGGTCAGGTTAAAGGGATACTGCAAGATTTTGGCAATTAAGCTGCATTTTTTTACTTACCtggagtcagatgaactcgtagaTACCATTTATACTCTActtgtagacttccagtcattgttctaatgctagttagcattgctTCACGAAACTACCTATTAAATAACTTCATACTGCACGCAGACATACAATTTTTATCCACAagctcatctgactctgggtaagttgAAAAATGACTTCATTACCAGAATCTCACAGTATCCCTTTAATCATTCTGGGAAGTCAAAGTCCCCATTTCAgttatgtacagtcgtggcaaaaagttttgaatgacacaaatattaattttcacaaa
>XM_021589641.2
CAGAACGGCAGTACGTACGTGCatcatttgtgttgttgttggtcGCGGTAAGATGGCGGCGCTCGGGGATGGATCAGCTCCGGCGGTGAATGGGTTAATACAACAGTTCACAGCGATTACAGGTGCCACAGAGAGTGTGGGGAAGCATATGCTAGAAGCATGCAACAACAATCTAGAAATGGCAGTGACCATGTTCCTGGATGGAGGGGGGATCGCAGAGGAGCCCAGCACCAGCTCCAGTTCAGCAGGGACCTCCAGCAGCAGAGCTCCCCCCGCAGATGACCAAGTGCGGGCACCCATCCCTCAGAAGCAGGACATACTGGTAGAGCCAGAGCCTATGTTTGGAGCACCAAAGCGACGAAGACCTGCCCGGTCCATATTTGACGGTTTTAGGGACTTCCAAACAGAAACAATCCGCCAGGAGCAGGAGCTGAGGAACGGCAGCGCGGTGGACAAGAAGCTCAGCACCCTGGCGGATCTGTTCCGGCCCCCCGTTGAGCTCATGCACAAAGGCAGCTTTGAGACGGCGAAGGACTGTGGTCAGCTGGAGAACAAGTGGCTGATGATCAACATCCAGAATGTGCAGGACTTTGCCTGCCAGTGTCTCAACAGAGACGTGTGGAGCAACGACGCGGTCCGGACCATCATCAGGGAGCACTTCATATTCTGGCAGGTGTACCATGACAGTGAAGAGGGCCAGAGGTATATCCAGTTCTACAAGCTCAATAAGTTTCCCTATATCTCCATTTTGGATCCCCGGACTGGTCAGAAGATGGTGGAGTGGAACCAGTTGGACGTTGCGTCATTTCTGGAACAGGTGACGGGCTTCTTGACGGAACACGGCCAGCTAGACGGCCCGGCGTCCAGCCACCCGCCCCCGGCCAAACGGGCCCGCTCCGAAAGTCTGATAGACGCCAGTGAGGACAGCCAGTTGGAGGCAGCCATCAAAGCCTCTCTCCAGGAGACCCACTATGAGTCGTCCTCCGCCCCCGACCTCCCCGACTCCCCCCACTCTGTAGAGGTAGACTCGGACGGAGACTCAGACGAGGAGCCCTTCTCCGACAGCGAGGGCCTCATCTCTGTCGACGGCTCGGATAACGAGACAACAGAACCACAGGAGGGCAGCTCCTGCTCCACAGGCGGAGACACCCCTCCTGGACCAGCCCCTCCCACATCTGCAGCTGTAGCCCCCCAGCCCCCGCCACAGCCGGACAGCCCACCTGCCCGTCACAGGAAGTCCCCCCACAACGAGAACAGCCACAGGAAAGAGGAGAGCAAAAAGAACCACCTGGAGCCTCTGGCGGCTGCGCCGGCCCGCTCCCAGGCCGACCCAGACTCAGAGCATCGTTCTGGGGAGAACCATCGCACCGCAACAGGCCAAAGCTCCAAATCTGTTAAGACGGAAACCTCCGACCTCGACTGCCTTGATGACAATGGTCCCAAGGCCAGACTGATGCTGCGCTAtccagacggacagagagagcagaTCGCCCTGTCGTCCAAGGCCAAGCTTATGgctCTGGTTAGACATGTCCAGTCGAAGGGCTACCCCAACGAACGCTTCGAGCTCGTCACCAACTTCCCCCGACGGAAGCTGGCCCACTTGGACTATGACGTCACACTGCAGGAGGCAGGGCTTTGTCCACAGGAGACTGTATTTGTGCAGGAAAGGAACTAAGCCATGCATTTTCTATCTTCAGACCACGCCCATTTCACCAGTGACCCGGGAGGACGTTACAGGCCGCTACTCCTGGGCTTTTTTTATTTTGGAATTAGACCATGCCCCTATTTGGGGACAACGAACTGTGGATGAACTTCATTACCCATCATTCCACTGGGAGGAAGTGACTGGCCTGTGTACTCTTTTTAGTAGGCATTGTTGTTCATCGTCAATTACCGAATGGATTCTATTCTGATTTTAGTTTTATTCTGAGGTAATAAACCAATCGGAGTAGAACACCTTAATGATACTGTTACAAATAAGCTGAGGCCCCTTAATAATGATCAGAGCTGGCATCAGAGTTGGCTCAGGAAAACTTTACAGACTATTATCCATAAAGGATGTCAAATGTCAGATATTTTTTTGAAGTTAATACTTATTTTTTGATTCATGAACACCTACAGCCAGGTAAAGGAGCGACTTGAACTCTGATTGGTCCCAAATTTGCTCTTCTACGTGTTGATTGGGTGAGGAGGGGACTTTGAATACAGGAATTGATGGAGAGGGGTGTAGGGTCGTTCAAgggataattttttttttttggggggggggggttcctcaaCTGTCAACCTGCACTACAGGAGTGGTGTAGCGATTGACATTTAGTCTTAgtcggtatatatatatatacacacctcttTTTTTTCTACCCCATTTCCAAGAAAAGATGCTGAAATATAATCATACAAACAAAGGGAAACTTGTTTGCTCTATTCCATTTCTACCATGTATTTGTCTATCTGCAATCTGTCTAAATTGTGACCACAACCTCAAAAGTATAGTGTTGGTGATGATGATCATTTCTTGATACCTCCGCCCCAATGTACCGAACGATCTGGGTCAGTGTAAGCAATGGGTGGTGCCGTTTGGTGTTATCACTCTTACTAGCCCAACTATAACTAATATCTATTTTGTCTAGTCAGATATGAGGGAGAGGTAACAAGTAGATTCTGATTGGGGCCATGTCCAATATTACTAATCTGCTTTAAACCTTTACCCACAGACTGGATATGTCTGTCACAGGGTTTCATCAACTTAGCTGTGAGCTAATAATCATAACCGTGGGAGAGCTGTCAAGCTGTGGAGTTCTGGTCTGAATGAGAAGTTTAACATGGGGTCTTGTTGCATACAACTGTCTTGAATACATTTTGGAGTATTTGTATGGCGATTTCTAGATTCCTAGAACCCAGTACATTGAATTTTATCCAAATCTAATTCAAATGTCAGGTCAGGTTAAAGGGATACTGCAAGATTTTGGCAATTAAGCTGCATTTTTTTACTTACCtggagtcagatgaactcgtagaTACCATTTATACTCTActtgtagacttccagtcattgttctaatgctagttagcattgctTCACGAAACTACCTATTAAATAACTTCATACTGCACGCAGACATACAATTTTTATCCACAagctcatctgactctgggtaagttgAAAAATGACTTCATTACCAGAATCTCACAGTATCCCTTTAATCATTCTGGGAAGTCAAAGTCCCCATTTCAgttatgtacagtcgtggcaaaaagttttgaatgacacaaatattaattttcacaaa

Function

NR:

description
UBX domain-containing protein 7-like isoform X1

GO: NA

KEGG:

id description
K24350 UBXN7; UBX domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589642.2 False 3684 mRNA 0.48 11 27033696 27046353
XM_021589641.2 True 3299 mRNA 0.49 11 27033696 27046481

Neighbor

gene id symbol gene type direction distance location
tfa LOC100136298 coding downstream 35303 26974438 ~ 26998393 (-)
LOC110508196 LOC100380746 coding downstream 60385 26925269 ~ 26973311 (-)
LOC118944898 NA coding downstream 105289 26928284 ~ 26928407 (-)
LOC118944904 NA coding downstream 105912 26927654 ~ 26927784 (-)
LOC118944878 NA coding downstream 113271 26912928 ~ 26920425 (-)
ppp1r7 ppp1r7 coding upstream 4777 27051258 ~ 27055816 (-)
tox LOC106599578 coding upstream 95063 27141544 ~ 27243306 (-)
LOC110508819 LOC106599582 coding upstream 257264 27303745 ~ 27316749 (-)
LOC110508822 LOC106599166 coding upstream 430542 27477023 ~ 27501636 (-)
LOC110508824 LOC106599165 coding upstream 465720 27512201 ~ 27517367 (-)
G2123290 NA non-coding downstream 96227 26936445 ~ 26937469 (-)
G2123281 NA non-coding downstream 112001 26921406 ~ 26921695 (-)
G2123275 NA non-coding downstream 121633 26911759 ~ 26912063 (-)
G2123273 LOC106599558 non-coding downstream 122630 26907953 ~ 26911066 (-)
G2123334 LOC106599575 non-coding upstream 46372 27092853 ~ 27093157 (-)
G2123349 NA non-coding upstream 93461 27139942 ~ 27140186 (-)
G2123449 NA non-coding upstream 169297 27215778 ~ 27216140 (-)
G2123495 NA non-coding upstream 219014 27265495 ~ 27265695 (-)
LOC110508791 LOC106568850 other downstream 964487 25677135 ~ 26069268 (-)
G2122515 NA other downstream 1083243 25946733 ~ 25950453 (-)
G2121457 NA other downstream 1759070 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 1885176 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2298709 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1498460 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1580574 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1616227 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1645658 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1838987 28885468 ~ 28885854 (-)

Expression


Co-expression Network