tox (LOC106599578)


Basic Information

Item Value
gene id tox
gene name LOC106599578
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27141544 ~ 27243306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966420.1
GGCAATCCTACCATGCCCCATTCGCTTGCAGATGACGGTAGCCGCTGGATAGAAACAACTACTGTCGCTGCAAATGCATCTGTCAGAAAGAGAAAGACGCGCAATAACTTCTTCAACAATAGAGTGATAGCTTacatattttgaaagttacaaCATTTTAACTGCGTTTACCCGTTTACCAAGTCCGTCGTTCATAGTGCGTTGATAATATAAGTTTTTCTTTCTCCTGAAAAACCGCGAACGCATGTGAGAGCATAATAGTTTGCCATTTTTAGATTCAAACCCTACACTTTTTCCGACTTCGTCCATCAGTCTTTATAGAGCCTTCAACTTTTGAGGAATCGAAAGTAGAAGCCTGAGTGGAAAAGcttgtgtggagattgatgttTTACTGAAATGGACGTGAGAGTATATCCACCTCCACCACAGTCTTTATCAGCAACAGATTCTTCCCGATTGGGACCCTTGCAGTATACCGATTCCCCGTACTGCAATAAGTACGACAGTGAGGCCATGTTCCTGGGCATGCCAGAGGCTGGCCTGGACTTTGTGCCAACCAACCAGTTCCGTGTGCCTCCCAATCCCCACCAGACGCATCTCAGCGCCAAACAGACTGGACCCCTGTGGAAACGAGATGGCCCTGCTCACTCCGATGGATCCCGGCTACCCTGGTCCTACCCAGTGCCCAGTTTGGGGGATGAAGACTTCAACATTCCCCCCATCACACCTCCCACCATCCCAGAACACATGCTGCACCCCCACCTACCAGAGTCGGAGTCTGGCTCCTACCACCCGCTGGCTCCCGTTCACTCCCAGAGTGGCCTACACCCCTTCCACCTTCAGGGAATGGACATGATGGGCCAGGATGGAGGGCTCTTGAGCCAAAATGGCAGCCTGATGTCCAGCACCCTGTCTGTGATGCAACAAATGGTCAACTCCGATTCCCGGTACAGCAGCCATCAGCCAATGGAAGCACTCAGATCCAGGAGCCAATCAGGCATGGGACATCAGAGTCAACTTACCACCATCAACCAATCACAACTCAACACCCAGTTGGGACTGAGCGGAAACAACGTTACCCATAATTCCCCATCTCCCCCTGGGAGCAAGTCGGCCACACCCTCTCCTTCTAGCTCTGTTCATGAGGATGACAATGAAGAGTCAATAAAGCAGGCAGAGAAGCGACCGGCAGCGGTCGAGACGCCCAAAAAGCCCAAGACccccaagaagaagaagaagaaggatccCAACGAACCCTCGAAGCCAGTCTCTGCCTACGCTCTGTTCTTCAGAGACACCCAGGCAGCCATCAAGGGATCCAACCCCAATGCTACTTTTGGAGAGGTATCCAAGATAGTGGCCTCCATGTGGGACGGCCTTGGAGAGGAACAGAAACAGGTGTACAAAAAGAAGACAGAGACGGCCAAGAAGGAGTACCTGAAACAGCTGGCTGCGTACAGAGCGAGCCTGCTCTCACAGaGTTACATTGATCCAGGTGAAGTCAAGGTGTCCCAGGCCACCTCTATGCTGGGGCCCAAGCCCCCCGTGTTCCCCGGATCAGGCCAGCagcacccccacccccatcactcCCACCCCAGCCTCTACATGAGCCACCCCTACCACCACCAGAgccaccacccccacccccaccaccagcaACAGCAGTCCCAGCAGCACCAGGCCGGCCTCAGCCCCCACCTGTCCCCCCTCCAGGGTCTCTCCAGGGGGGTGGCCCCCCGGGCCAGTGGACCCCATCCAGGCGGAGTGTCTCTGGGCAGCATGGCGGCGGCGACAACCCCTCCCCTCCAGATCAGCCCGCCCCTCCACTCCCACTCTCACCTAGGAATGCACCACCAGCAACAGCTCAGCGGACACCCGCTGTCTCTGCACTCGCCCTCCATGGCCCAGGGATTCCCTCTCCAGTCAGAATTCCAGAACATGCTCAACTCGTCCGGTGGGCAGGGACTGTCCCCATCCATGGACTACAGACAGGTGTGTCGGAATGGGCCCAGCCAGCACCTCGACTGGACCAGCGAATACTGTGGCAACGGAGCTCTTCAGAGAGACAAGCCTCTGTTCCTGACCtgatctgacctctaacctccaCAAAACCAGCCCCGGAACAGACTACAATCCGACCCGGTCCACATTCGGTCCCACTCTGCGTTCACTGGACCAAGGCATTGCCCTCAACCCCAGAAGAAACTCCTTGACCACCACCCCCCACTCTGGCTAAACCATCTGACCGTCACTCAAACAAGAAAGGCAGAAGCACATTTTCCAAAACAtccatattttgatatgttttgaTTCTTTGTGATCTACTTTGAAAATAATCATACTGATGTCATGAGTGGGTTTTGGATTCTTTGTGACCCACACTCTACCCTCACCTGATATTAGATACAAATGTCAAGTTAATGTTTTTGGACTTTGCAATGCATGCCCATAAAGGCACAAATAAATGTGTTCAGAGATGTGAAAGAATAGGCAGTACTGTCCTCTCTACTGACGTGTCATTGGATCATTATTGGTATGTCACTGGGTTGTGTTTTGAGGAAGACAAGCTGGTGACGTAGAAGCGTTATGGTAGACCAGTGTTCAAATCCCAGAAGTTCATTTAGCACTTAGGGGCTCTTAGGTCTTTTTTTCCACACATCGCAAGATGTAAACCAAAACCCCAAattgacttttattttgaaaggaAAAGCAAGATCATCTTTATcatttgaaaaaataaataaagaacacCTATTATATTTCTATACCTCTttatctctcactctcgctctctgctACTGGACTGCCTTAGAGACTGTTGTGTCTTTGAGCAGTGTTGTGTTGCTCTTTCTAAACTGATGCTGATCATGTTCATAGGATCCTCTGTGGACTATGCCGAGGCTGGTTAGTATAGACATCACCTCAAGCTGTACATAGAATTTTGTGTTACTCTTGGTCCTAGGGTATAACAACAAAAGCTTTTTTCAAGTGCAGTGTGATTGTGAATTGGATCACACTGGTTTTAATTTAACTATCAAAGAAGGGAAATTGATTAAACGGCTGTTATAGTTGTTTGGATTTTATTGGGGCGTAAACATTTTCAAAATCATGATATTTGTAAGATAAAACTTGCTAAATCAGTAGTTTCCATTCTCTGAAATAAAGTCGTAAACTTTGGCTGCCCTTTACCTGGAAAACATCACAAAATATGAGTTTTGTGAAATTAGACAAATAAAAAGTTAGATTTGGTACAAGGAAAACATCTTTTTTGGTACGACTTCTGGGCATATTGATTACATGGATTCTCATCCCACTCCTGTGTCTGAGGTTGTTTCTCTTTATCAGTAGAAAGCGTCAGAATGAGAGTGGTAGAGACAGATTGGTAGAGTGGCAATATATATAACCCTGACATCTGGCTCGTCGTCACTCTTCTGATcactcccatctctctttctccaagtCTGTTCATCATGCTGCGCCTATTTATGAAACAATAACTGTAGGTGTTTTTTTAAAGTCCTTATGTTTAATAGCGTTGATGATGGCTGTCTTCTCTGTTCCATCTGGGTTCCTTTCTCTTTGGCAGAAAAACGCCTCCAGGCAACAACAATGTGAAAAATTGTGTTCTTATTTTTAGTTTCTAATGTGTTTGAAAAAAATAAAGTCAAACCTGCATTTTTGTGCAGTAATCACTCA
>TU2427848
AGCCCGCCCCTCCACTCCCACTCTCACCTAGGAATGCACCACCAGCAACAGCTCAGCGGACACCCGCTGTCTCTGCACTCGCCCTCCATGGCCCAGGGATTCCCTCTCCAGTCAGAATTCCAGAACATGCTCAACTCGTCCGGTGGGCAGGGACTGTCCCCATCCATGGACTACAGACAGGTGTGTCGGAATGGGCCCAGCCAGCACCTCGACTGGACCAGCGAATACTGTGGCAACGGAGCTCTTCAGAGAGACAAGCCTCTGTTCCTGACCtgatctgacctctaacctccaCAAAACCAGCCCCGGAACAGACTACAATCCGACCCGGTCCACATTCGGTCCCACTCTGCGTTCACTGGACCAAGGCATTGCCCTCAACCCCAGAAGAAACTCCTTGACCACCACCCCCCACTCTGGCTAAACCATCTGACCGTCACTCAAACAAGAAAGGCAGAAGCACATTTTCCAAAACAtccatattttgatatgttttgaTTCTTTGTGATCTACTTTGAAAATAATCATACTGATGTCATGAGTGGGTTTTGGATTCTTTGTGACCCACACTCTACCCTCACCTGATATTAGATACAAATGTCAAGTTAATGTTTTTGGACTTTGCAATGCATGCCCATAAAGGCACAAATAAATGTGTTCAGAGATGTGAAAGAATAGGCAGTACTGTCCTCTCTACTGACGTGTCATTGGATCATTATTGGTATGTCACTGGGTTGTGTTTTGAGGAAGACAAGCTGGTGACGTAGAAGCGTTATGGTAGACCAGTGTTCAAATCCCAGAAGTTCATTTAGCACTTAGGGGCTCTTAGGTCTTTTTTTCCACACATCGCAAGATGTAAACCAAAACCCCAAattgacttttattttgaaaggaAAAGCAAGATCATCTTTATcatttgaaaaaataaataaagaacacCTATTATATTTCTATACCTCTttatctctcactctcgctctctgctACTGGACTGCCTTAGAGACTGTTGTGTCTTTGAGCAGTGTTGTGTTGCTCTTTCTAAACTGATGCTGATCATGTTCATAGGATCCTCTGTGGACTATGCCGAGGCTGGTTAGTATAGACATCACCTCAAGCTGTACATAGAATTTTGTGTTACTCTTGGTCCTAGGGTATAACAACAAAAGCTTTTTTCAAGTGCAGTGTGATTGTGAATTGGATCACACTGGTTTTAATTTAACTATCAAAGAAGGGAAATTGATTAAACGGCTGTTATAGTTGTTTGGATTTTATTGGGGCGTAAACATTTTCAAAATCATGATATTTGTAAGATAAAACTTGCTAAATCAGTAGTTTCCATTCTCTGAAATAAAGTCGTAAACTTTGGCTGCCCTTTACCTGGAAAACATCACAAAATATGAGTTTTGTGAAATTAGACAAATAAAAAGTTAGATTTGGTACAAGGAAAACATCTTTTTTGGTACGACTTCTGGGCATATTGATTACATGGATTCTCATCCCACTCCTGTGTCTGAGGTTGTTTCTCTTTATCAGTAGAAAGCGTCAGAATGAGAGTGGTAGAGACAGATTGGTAGAGTGGCAATATATATAACCCTGACATCTGGCTCGTCGTCACTCTTCTGATcactcccatctctctttctccaagtCTGTTCATCATGCTGCGCCTATTTATGAAACAATAACTGTAGGTGTTTTTTTAAAGTCCTTATGTTTAATAGCGTTGATGATGGCTGTCTTCTCTGTTCCATCTGGGTTCCTTTCTCTTTGGCAGAAAAACGCCTCCAGGCAACAACAATGTGAAAAATTGTGTTCTTATTTTTAGTTTCTA

Function

NR:

description
thymocyte selection-associated high mobility group box protein TOX-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966420.1 False 3696 mRNA 0.48 10 27141544 27243306
TU2427848 True 1831 lncRNA 0.42 3 27141597 27158968

Neighbor

gene id symbol gene type direction distance location
ppp1r7 ppp1r7 coding downstream 85728 27051258 ~ 27055816 (-)
LOC110508807 LOC106599567 coding downstream 95063 27033696 ~ 27046481 (-)
tfa LOC100136298 coding downstream 143151 26974438 ~ 26998393 (-)
LOC110508196 LOC100380746 coding downstream 168233 26925269 ~ 26973311 (-)
LOC110508819 LOC106599582 coding upstream 60439 27303745 ~ 27316749 (-)
LOC110508822 LOC106599166 coding upstream 233717 27477023 ~ 27501636 (-)
LOC110508824 LOC106599165 coding upstream 268895 27512201 ~ 27517367 (-)
LOC110508198 LOC106599164 coding upstream 275069 27518375 ~ 27561560 (-)
LOC110508825 LOC106599162 coding upstream 348465 27591771 ~ 27595809 (-)
G2123349 NA non-coding downstream 1358 27139942 ~ 27140186 (-)
G2123334 LOC106599575 non-coding downstream 48387 27092853 ~ 27093157 (-)
G2123309 NA non-coding downstream 65657 27023890 ~ 27075887 (-)
G2123290 NA non-coding downstream 204075 26936445 ~ 26937469 (-)
G2123281 NA non-coding downstream 219849 26921406 ~ 26921695 (-)
G2123495 NA non-coding upstream 22189 27265495 ~ 27265695 (-)
G2123505 NA non-coding upstream 30646 27273952 ~ 27274192 (-)
G2123510 NA non-coding upstream 32473 27275779 ~ 27276393 (-)
G2123519 NA non-coding upstream 36846 27280152 ~ 27280521 (-)
G2123531 NA non-coding upstream 44464 27287770 ~ 27288089 (-)
LOC110508791 LOC106568850 other downstream 1072335 25677135 ~ 26069268 (-)
G2122515 NA other downstream 1191091 25946733 ~ 25950453 (-)
G2121457 NA other downstream 1866918 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 1993024 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2406557 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1301635 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1383749 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1419402 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1448833 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1642162 28885468 ~ 28885854 (-)
LOC118944898 NA coding downstream 213190 26928284 ~ 26928407 (-)
LOC118944904 NA coding downstream 213813 26927654 ~ 26927784 (-)
G2123449 NA non-coding upstream 56810 27215778 ~ 27216140 (-)

Expression


Co-expression Network