LOC110508819 (LOC106599582)


Basic Information

Item Value
gene id LOC110508819
gene name LOC106599582
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27303745 ~ 27316749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589654.2
AACTTACCTAGAGTGTCTGTTGATGGGAGAGTCTACACTgcagccgagagagagagagactttcacTCTCTCCTATTAGATGGACTGAGCAGGACGAAAGAAAACGGATCAAATCAAAAGCCAAAGACTTTGACATCAAATCAAAGCAGGTGTGTTCAGTAAAAAGACTTGTTCCATACTGCCATGGCAGACAGCATGACTGAGGAGTCTGACTACTACCCTGGGAAGGATGATCTGGACTGGGGATATCAGGAAGGTGTAGAGTGGGGTTTGCTGTTCCCTGATGCGAATGGGGAGTACCAGTCCCCGATCAACCTGAACTCCCGGGAGGCCCGTTATGACCCCTCTCTCCTGGACGTGGGGCTCACGCCCAATTATGTGGTGTGTCGGGACTGTGAGGTCATCAACGATGGACACACCGCACGCATCATTCTGAGGTCCAAATCAGTGGTAACTGGTGGCCCATTGCCAAGTGACCACGAGTATGAGCTGCATGAGGTGCGCTTCCATTGGGGCAAGGAGAACCAGCGGGGGTCAGAACACACCGTCAACTTTAAGGCCTTCCCCATGGAGCTCCATCTGATCCACTGGAACACAACGCTGTTCAACAGTGTGGAAGAAGCCCTGGCGAAGAAGAACGGAGTTCTCATCATCGCTCTGTTTGTGCAGATAGGGAAGGAGCATCTGGGGTTGAAGGCCATAACAGAAGTGCTGCAGGACCTACAATACAAGGGGAAGACCAAAATAATACCGTGCTTCAATCCCAACACACTACTTCCTGACCCCCTCCTGAGAGACTACTGGATATATGAGGGCTCCCTGACCACACCTCCATGTAGTGAGAACGTCACCTGGATCCTGTACCGCTACCCACTCACTATCTCACAGTTACAAatTGAGGAGTTCAGGAGGCTGAGGTCCCATCTAAAAGGTGCTGAGCTTCCTGAGGGAAACGATGGGATGTTGGGAGACAACTTCCGCCCCACTCAGCCCCTTAGTGACAGGACGGTCCGGGCTGCCTTCCAGTGACACCCCCTCCCCCAGTCCATCCTCCATGGGGAATCCCTAGCTACATGTTCCACAGTGAAACAAGAGGAggagataaaggagaggagagggagaaacaacCTTGCTGACTCGGCTGGATGGTTGGATGTTATGTTACATTGGATCACTTGGACTGGGAGGGAGCTAACAAAGGCACCATTTTACTCTGTGTTGATGAAGGCAGTGCTGACAGATCAACCGGCTTACTTCACCTGTGACCTGGAACCaatggcattaatacgtgtcataTATCAGTtttcaaacaatgtaaaaaatatatatatatattgagttaataaagtcgcatacaaacatg
>XM_021589653.2
TGAAACTTACCTAGAGTGTCTGTTGATGGGAGAGTCTACACTgcagccgagagagagagagactttcacTCTCTCCTATTAGATGGACTGAGCAGGACGAAAGAAAACGGATCAAATCAAAAGCCAAAGACTTTGACATCAAATCAAAGCAGGTGTGTTCAGTAAAAAGACTTGTTCCATACTGCCATGGCAGACAGCATGACTGAGGAGTCTGACTACTACCCTGGGAAGGATGATCTGGACTGGGGATATCAGGAAGTAGGTAAAGAACCCAAAGAAGGTGTAGAGTGGGGTTTGCTGTTCCCTGATGCGAATGGGGAGTACCAGTCCCCGATCAACCTGAACTCCCGGGAGGCCCGTTATGACCCCTCTCTCCTGGACGTGGGGCTCACGCCCAATTATGTGGTGTGTCGGGACTGTGAGGTCATCAACGATGGACACACCGCACGCATCATTCTGAGGTCCAAATCAGTGGTAACTGGTGGCCCATTGCCAAGTGACCACGAGTATGAGCTGCATGAGGTGCGCTTCCATTGGGGCAAGGAGAACCAGCGGGGGTCAGAACACACCGTCAACTTTAAGGCCTTCCCCATGGAGCTCCATCTGATCCACTGGAACACAACGCTGTTCAACAGTGTGGAAGAAGCCCTGGCGAAGAAGAACGGAGTTCTCATCATCGCTCTGTTTGTGCAGATAGGGAAGGAGCATCTGGGGTTGAAGGCCATAACAGAAGTGCTGCAGGACCTACAATACAAGGGGAAGACCAAAATAATACCGTGCTTCAATCCCAACACACTACTTCCTGACCCCCTCCTGAGAGACTACTGGATATATGAGGGCTCCCTGACCACACCTCCATGTAGTGAGAACGTCACCTGGATCCTGTACCGCTACCCACTCACTATCTCACAGTTACAAatTGAGGAGTTCAGGAGGCTGAGGTCCCATCTAAAAGGTGCTGAGCTTCCTGAGGGAAACGATGGGATGTTGGGAGACAACTTCCGCCCCACTCAGCCCCTTAGTGACAGGACGGTCCGGGCTGCCTTCCAGTGACACCCCCTCCCCCAGTCCATCCTCCATGGGGAATCCCTAGCTACATGTTCCACAGTGAAACAAGAGGAggagataaaggagaggagagggagaaacaacCTTGCTGACTCGGCTGGATGGTTGGATGTTATGTTACATTGGATCACTTGGACTGGGAGGGAGCTAACAAAGGCACCATTTTACTCTGTGTTGATGAAGGCAGTGCTGACAGATCAACCGGCTTACTTCACCTGTGACCTGGAACCaatggcattaatacgtgtcataTATCAGTtttcaaacaatgtaaaaaatatatatatatattgagttaataaagtcgcatacaaacatg

Function

NR:

description
carbonic anhydrase-related protein-like isoform X1

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589654.2 False 1363 mRNA 0.50 9 27303745 27316746
XM_021589653.2 True 1387 mRNA 0.50 10 27303745 27316749

Neighbor

gene id symbol gene type direction distance location
tox LOC106599578 coding downstream 60439 27141544 ~ 27243306 (-)
ppp1r7 ppp1r7 coding downstream 247929 27051258 ~ 27055816 (-)
LOC110508807 LOC106599567 coding downstream 257264 27033696 ~ 27046481 (-)
tfa LOC100136298 coding downstream 305352 26974438 ~ 26998393 (-)
LOC118944898 NA coding downstream 375338 26928284 ~ 26928407 (-)
LOC110508822 LOC106599166 coding upstream 160274 27477023 ~ 27501636 (-)
LOC110508824 LOC106599165 coding upstream 195452 27512201 ~ 27517367 (-)
LOC110508198 LOC106599164 coding upstream 201626 27518375 ~ 27561560 (-)
LOC110508825 LOC106599162 coding upstream 275022 27591771 ~ 27595809 (-)
LOC110508831 LOC106599206 coding upstream 516611 27833360 ~ 27837602 (-)
G2124169 NA non-coding downstream 3236 27300281 ~ 27300509 (-)
G2124168 NA non-coding downstream 3925 27299520 ~ 27299820 (-)
G2123531 NA non-coding downstream 15656 27287770 ~ 27288089 (-)
G2123519 NA non-coding downstream 23224 27280152 ~ 27280521 (-)
G2123510 NA non-coding downstream 27352 27275779 ~ 27276393 (-)
G2124191 NA non-coding upstream 27027 27343776 ~ 27345757 (-)
G2124230 NA non-coding upstream 76845 27393594 ~ 27394370 (-)
G2124233 NA non-coding upstream 85531 27402280 ~ 27403122 (-)
G2124236 NA non-coding upstream 90243 27406992 ~ 27410682 (-)
G2124257 NA non-coding upstream 119920 27436669 ~ 27437199 (-)
LOC110508791 LOC106568850 other downstream 1234536 25677135 ~ 26069268 (-)
G2122515 NA other downstream 1353292 25946733 ~ 25950453 (-)
G2121457 NA other downstream 2029119 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 2155225 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2568758 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1228192 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1310306 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1345959 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1375390 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1568719 28885468 ~ 28885854 (-)

Expression


Co-expression Network