LOC110508820 (rab2a)


Basic Information

Item Value
gene id LOC110508820
gene name rab2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27330799 ~ 27345830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589655.2
AATAATTGCTTTTAGTTTGCGTGGCGAGGGCGGAACGTATGACGACGTCAGCTGAAGCTTGGAGGTGTTATTTGTTCCTTCCCGTCGAAGAGCGAAAGGAGGCTAGAAAGGGGAAGATTTAACGATTACACAGACCATTTTCATACGGTTTCAATTATACAAAACAACGGCAGAGGAAGGTTGACACAGGACCCAGTGGCCATGGCATATGCATACCTTTTCAAATACATCATTATCGGAGACACAGGTGTGGGGAAATCATGCCTATTATTACAGTTCACAGACAAGCGGTTTCAGCCGGTGCACGACCTCACTATCGGTGTGGAGTTTGGGGCGCGGATGATCACCATAGATGGTAAACAGATCAAGCTGCAGATCTGGGACACGgccggCCAAGAGTCCTTCCGCTCCATCACCCGGTCTTACTACAGAGGGGCAGCTGGCGCCCTGCTCGTGTATGACATCACAAGAAGGGACACCTTCAACCACTTGACAACCTGGTTAGAGGACGCTCGCCAACATTCCAACTCCAACATGGTCATCATGCTCATTGGGAACAAGAGTGACCTGGAGTCCAGGAGAGAGGtgaagaaggaggagggagaggcctTCGCCAGAGAGCACGGCCTTATCTTCATGGAGACCTCCGCCAAGACCGCATCCAATGTAGAAGAGGCATTCATCAACACAGCGAAGGAGATCTACGAGAAGATCCAGGAGGGTGTCTTCGACATCAACAATGAGGCTAACGGCATTAAGATTGGGCCCCAGCACGCTGCCACCAACTCCACACTCTCCGGTAGCCAGGGGGGCCAACAGGCTAGAGGGGGATGCTGCTGAACACCCTGCCCCTCTGTCTCATACTCCCTCCCCCAACCACCCATCCTGCCCCTTGCGTTTCTTCTGGACTGGTCGGGCTCACTAACATTTTCTTAACCCCTCCCTCTACACAGCCTTGCCACAGGAGAGTCTAATTGTATACTCCATGACTGTCAGTCAAAATATACCAAGCAAAACATGTTAAAGTACCCCTGGTCCTGGGGCAAAAATGCTTGTCCTGCATTGGAGCCTGTCTGGGTTGTAGAATGGTAGGGTTTACTGTTACTATTGTGGCAGGATACTTTAGGATAAGGGTCTCATATCTATCTGTACATCAAACAGGCAGGATGCTTTAGGATAGGGACTCATCTATCTGTACATCTGTGAGCCAGTTGTGGATCATGTTTTTCTTTTTGACGTTTTGACTTAAAGCTGAATTGTATAGAGCTTGGTCATCAATTGGTTGGTCATCAATTAGTATTTGAATTGGTTTCATGTGGGAGAAAGAAAGCTTTGGGAACGTGTGGTTAACGCAGAAGTTTGAAATAAAAGAGAAAAAGAAATGTAGAGTTGTGTCGAGCAGCGGCCATGTCTGAAGTGAAGAAACTAAAAGGAGAAAAAACAGGGCTGTTTTAATTCTGTATTTATCACTCAcattctgtatatatatatagtaatcCTTTCTTGCTTTGGTGTATGTTGACCGAGCTAGAATTCTTTGAATTTCCTGGAAAAATCTAGACTTTACGAATAGAGCTTGAAACTGCAACAGTATTGCTAAAAAACCTACTTGGACACCATTTTAAGATTTGACTTTTAGTTTGTCCTGCCAtctgcctcccccctcccctcgctATCTCTCTGTGCCCTAGATCTGCTATGACTGTGTATGGAAACTTTGGCTCAATATTCTGCATCTTATCTATTTTAATGCCAAAATGTTGTTTACCTGTGTTCAATAACCACGAACCCCAGAATTTGATCACCTCTACTCTGGAAAGGGATCTCAGCTGTTTGCCTTAACGAAAAGATTGGGACAGCAGAAAAACAATAGAAAAACATAATCAGGTTGCAAAGGAATCATTCCACTAACTACATATGCATAGTCTTATACATACACAGCACATACACAGcacttttttaaatttatttttttacattcaaaCATGTGTTGCATACATTCAGACATTCTCTAAATCACTGGttctcaaccctggtcctggggacccaaaggggtgcacatGTTTTCTTTTTGAActacacacctgactctaatTATCGAAGCCTGATGATGAGTTGGTCATTTGACTCAGGTGTGCAGTGTTATGGCAAAAACAGAACTGTACACTCCTTTGGATcaccaggaccaggattgagaacccctgctctaaatgtgtgtatgtatacacgTATATTAAGAAAGTACATGCATTCCTAAATGTATACATGTGTACCTACATGCGCACACACAGTTGTCTATTTATACATATAAGTCTGCATGCATACATATTTTCTCTTCAGGATTTTGTTTTCCAAGCAGTCCGCTGTGGAGCATCAGTGCAGAGCAGCGTTTTACTGTAGGTGTGAGTGGCTGTGTAAAGCCTTGCTTTCTTTGGCAGTGCGTTCTGTTAGTAGATATTATGGTGAACATCGCGTCTGTTGTAAGAGCGGCGCGGGAAAAGCCGAACCTGGAGTGTCTGTGACCCCCCGACGTTTGCTGTGTTGGtttttcttaaaaataaaaaatgctatcgcaaataataaaaaattataaaatgaAATATAAATTTATGTGGAAGAAATGTGCAATGTTTAAACTTACATTTTGTAATTTCCTTTTTAGAGTTGACGTTTTGCATTTTGCATCTCCCTATAGTACTTTTCTGAGTGTCTGTGTTGGTATATGAATGAAACGATTATATATGGATCCATACTGTATTGTATCTCTTGATTTATCAATTTATAAAGTGAAGCATGTGTGTCCTCAGA

Function

symbol description
rab2a Predicted to enable GTP binding activity and GTPase activity. Predicted to be active in Golgi membrane. Is expressed in axial mesoderm; nervous system; neural plate; notochord; and solid lens vesicle. Orthologous to human RAB2A (RAB2A, member RAS oncogene family).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07877 RAB2A; Ras-related protein Rab-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589655.2 True 2808 mRNA 0.43 8 27330799 27345830

Neighbor

gene id symbol gene type direction distance location
xrn1 LOC106599575 coding upstream 194070 27069045 ~ 27136729 (+)
LOC110508195 LOC106599554 coding upstream 420902 26782925 ~ 26909897 (+)
LOC110508806 LOC106570393 coding upstream 485309 26845034 ~ 26845490 (+)
LOC110508800 LOC106599548 coding upstream 621231 26707377 ~ 26709568 (+)
LOC110508797 LOC106599544 coding upstream 643991 26679791 ~ 26688506 (+)
LOC110508821 chd7 coding downstream 2274 27348104 ~ 27454444 (+)
LOC110508826 LOC106599160 coding downstream 286646 27632476 ~ 27674752 (+)
LOC110508827 LOC106599210 coding downstream 374719 27720549 ~ 27725061 (+)
LOC110508828 LOC106599159 coding downstream 384488 27730318 ~ 27745041 (+)
LOC110508829 LOC106599157 coding downstream 405322 27751152 ~ 27820731 (+)
G2123551 LOC100846954 non-coding upstream 28582 27301948 ~ 27302217 (+)
G2123528 NA non-coding upstream 44522 27286019 ~ 27286277 (+)
G2123527 NA non-coding upstream 44883 27285585 ~ 27285916 (+)
G2123525 NA non-coding upstream 46129 27284434 ~ 27284670 (+)
G2123514 NA non-coding upstream 51551 27279019 ~ 27279248 (+)
G2123613 NA non-coding downstream 50098 27395928 ~ 27396624 (+)
G2123632 NA non-coding downstream 104450 27450280 ~ 27450622 (+)
G2123633 NA non-coding downstream 109723 27455553 ~ 27455761 (+)
G2123638 NA non-coding downstream 117058 27462888 ~ 27463149 (+)
G2123644 NA non-coding downstream 128523 27474353 ~ 27474694 (+)
G2123170 NA other upstream 221517 27106034 ~ 27109282 (+)
G2123174 NA other upstream 226529 27101312 ~ 27104270 (+)
G2123101 NA other upstream 385612 26942200 ~ 26945187 (+)
G2122177 NA other upstream 956239 26357538 ~ 26374560 (+)
LOC110508851 LOC106599130 other downstream 1176397 28522217 ~ 28551515 (+)
LOC110508880 NA other downstream 1924955 29270737 ~ 29274454 (+)
G2125614 LOC106599059 other downstream 1974913 29320743 ~ 29323384 (+)
G2126497 NA other downstream 2864417 30210247 ~ 30211633 (+)

Expression


Co-expression Network