LOC110508198 (LOC106599164)


Basic Information

Item Value
gene id LOC110508198
gene name LOC106599164
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27518375 ~ 27561560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966011.1
GACGCCACAACCACGTCACTTTCTGCCCAACGATGGCGACTCAACGACCTCACAGCACAAGAGGCTAGGGGCTGTTACCTCAGAAACAATGTAGTCCAAGTAATAATCAAAGGCGAAAAAACATGTTATTATAGTGACAACGTAGCTAGTTAAGATAAAGGCGGAGAGGAGCATTTTCTTGAAGTAATGTTTCGTGGCTGTCACTCAGGTTCTCCGACCATAATGTGAGACGGAGAAAAGGGGATCTTCGACCGAGCAGCACAGTCATAATCTGGATGACAAACATTGCTAAGTGGTGATTCTCTATCAAACCGGACTCGCTGGTTTTattttagctggctggctagctgtaTGATATCCTCCATCGCAAAGAAAGTCATCTGACAGCAAGTATTTCAACGTCGAAACCCCAGAGGGGAACCACTGAGGAAGGATGAAATTCACGGAGCACCTTTCGGCGCACATCACCCCTGAATGGAGAAAACAATACATCCAGTATGAGgcTTTCAAGGATATGCTGTATTCTGCCCAGGACCAGGCTCCCTCTATCGAAGTCACAGACGAGGACACAGTCAAGAGATACTATGCCAAGTTTGAGGAGAAGTTCTTTCAGGCGTGCGAGAAGGAGCTGGCCAAAATCAACACATTCTACTCAGAAAAGCTAGCCGAGGCCCAGCGTCGTTTCGCCACTCTCCAAAATGAGCTGCAGTCGTCGCTGGATGCCCAGCGGGAAAGCAGCATGCAAGGCCTCCGTCGCCGCCGCAAGGCCGTGTTCCACCTGTCCCAGCAGGAGCGCTGCAAACACCGCAACATCAAGGACCTGCAGCTGGCCTTCTCCGAGTTCTACCTCAGCCTCATCCTGCTGCAGAACTACCAGAATCTGAACTTCACAGGTTTCCGTAAAATCCTGAAGAAGCATGATAAGATCCTGGAGACGTCGCGGGGGGCCGACTGGCGCGTGGCCCATGTGGAGGTTGCCCCCTTCTACACCTGCAAGAAGATCACCCAGCTCATCTCTGAGACTGAGGCCCTGGTAACACAAGAGTTGGAGGGCGGAGACAGACAGCGAGCCATGAAGAGGCTAAGAGTGCCACCACTAGGTGCTGCACAGCCTGCTCCGGCATGGACCACCTTTAGGGTTGGGTTGTACTGTGGAGTCTTCCTAGTCCTCATGGTCACCGTCGTCATCACAGCTGCGGTTGTGATAGAGAATGCCAACGTGTGGCCACTGGTGAGGATCTACCGCGGCGGCTTCCTGCTGATCgagttcctcttcctgttgggCATTAACACGTACGGCTGGCGCCAGGCAGGGGTTAACCACGTGCTTATCTTCGAGCTCAACCCACGCAACAACCTCTCCCACCAGCACCTCTTTGAGATTGCTGGTTTCCTGGGGGTGCTGTGGTGTGTGAGCATCCTTTCCTGTCTGTTCTCCAAATCCATTCTGGTGCCCATGCAGGCCAACCCGCTGGTCCTCTATGGCTTCTTCTTACTCTTCCTCATCAACCCCTTCAAGACCCTCTACTACAAGTCACGCTTCTGGCTCCTCAAACTGCTGttCCGTGTGGTGACAGCCCCGTTCCACAGGGTAGAGTTTGCAGACTTCTGGCTGGCTGACCAGCTCAACTCTCTAGGGGTGGTTCTGATGGACCTGGAGTACCTCATCTGTTTCTACAGCTTCGAGCTCGACTGGAAGCAACAGGACGGGCTACTGCAGGACAGTGGAGGCGTGTGTCACTCCTACTCGTACGGTGTGCGGGCCGTGATCCAGTGTCTACCGGCGTGGTTCCGCTTCGTGCAGTGCCTGCGCCGTTACCGTGACTCCAAACGGGCTTTCCCTCACCTGGTCAACGCCGGGAAATACTCTACCACTTTCTTCGTGGTCACCTTCGCTGCCCTGTACAGCACTCACAAAGAGAATTCTGCGAGTCACAACGAAGCTAAGATCTTCTTCTACCTGCTGATTGGCTGTTCCATAGTCAGCTCCTGTTACACCCTGGTGTGGGACCTGAAGATGGACTGGGGCCTGTTTGACCGAAACGCAGGCGATAACACCTTACTCAGAGAGGAGATCGTCTACCCCCAGAAAGCCTACTACTACTGTGCCATACTGGAGGATGTGTTGCTACGTTTTGCCTGGACGATACCCCTCTTCCTGAGCACAGTCAGTGGGATACCCTCCGCTGCAGACATCCTGGCCACCATCCTAGCCCCTCTGGAGGTCTTCAGGCGTTTTGTCTGGAACTTCTTCCGTCTGGAGAACGAGCACCTGAATAACTGTGGCGAGTTCCGAGCCGTGAGGGACATCTCAGTGGCTCCACTGAACGCTGACGACCAGACGCTGCTGGAGCAGATGATGGACCAGGAGGACGGAGTCCGGAACCGCCTGGGCAAGAAGAACTGGAAACGCTCCTACAGCATGTCCCTAAGACGGCCTCGCCTTGCTTCCCAgacCAAGACCCGAGACACCAAAGTTCTCATCGAGGACACTGACGAGGACACCTGACATCAGGCCAGACCCATTGCATCCATAGCATGGGTTCAGAACCTCTTTAAAGGACCACGCCCCTCCTAGGGGCACGCCCCCTGacccccttcctcccccatcAATCAGTCGATCGATCGTTTGATTGACCTGCCCCCTCGTCAGCTTCTCCAATCAGTCCATCACAGAGCTGCCTATCTGCACCTTACATGTATtgacataaatacacacacacacacacacagagagagagggagtacaaAGACATGAATATAGGAGTAGGTAGAGGAACAAAATATTACACACACCTTGGAACAGCTACTTTTAAGAAACTTTCTTTTTGTTACATTCATGGACCATTTAGGACTGAGTTGACGTCACCCGTTATTTTTCAGATTCATGGGAAAGAGACGAAACAACAAGACTGTACATGTTGATGTAGATATTAGGAAGAACAAACGGGTGGACTAACTTTTGATTTCAAGATGGCTAATCAGAAATGATAGAATATAAAAAAAAAGACTGAGAGCGTTGGACTCTGAACAGTGATTGCAGAGGAGTGTCTGACCAGTCTGGTTCTTTGACTTCCTCGTTCCATGTTTTGATGaacatgatgatgaagatgactaTATTAATGTGGCTGTTCTTTCCATGTGCTATAAGTTCTTCCACGAATACCTTGgttcttattttattttgttgAATGTACATTTAATTGTTATTTATGCGAGGGGAGAGATGCCTAAAACATTTTGGGAGTGAATTAttttaaattaaaaacaaaatGGGTGTTTCTGATTTGAAATGGCTTCTAAAGTCTCTGCCTGACGTTGCCCATAAGAACTGTTCCAGGACCTGTTGGGGATTGGGATTCATTCTAATGGTTAAGTGGGTCGGCCTGAATAGAAGTCTGGTCAGAGACCAATGTTTTTTGGGCATCTCATCCTATAAAAGGACTTTGTATGTTCAAAAACCCTCAGGAGGCTCCGATGTAGACAATTCTCTCAAAACAAGCCACCCCCTTCCCTGTCTTCAGAACCTTCCAATCTGGGTTAACTATAACATTATGTTTACTTTCATGCCAAATCTAGTCTTTTGTCTTTTTAGATACCAGTGTGAGCTAATGCAATCTCTCAGTAAGCTGTGTGAGAATGGCAGAATTTTCTACTATCGTTATATCGCTTGCTCTTCTCAGAGCTAGCCAAATATCTGCAACATTCCATTGAGAGCTGGACTGTGCTTCCACGGCACAACGCCGCCTAAGTCACATAGCACAGCAGATATAAATAGAATCTATAGAAGATATTTCACTATTAACAGCCCTCACTTTTTCTTGGTCATGTGACGAGTTGTCAGGTCAGGAGAAAATCAGAGCCCTACTCACTTTTTAATATATACCTTCCGTTCTAGACATCTGAGTTCTATCTGCGTTGCTTCGCAGCCTTTTGTCCCCATACAGCATAACGCAGATCTCTGTTGTCAACTTCAGTTTAGCCATCTTTATTGGCCCTGTGTTGTTCCTGGTCCGGTCCATTCCATTAGATCTCAGGGCAGCACACCCAATGCCAGTTAGGAGTCCGGTGTCTGGGGGTGTGCAGGGATTGGCCTCTTCACCAACCAATCATCTCCATTCTGATCCACCCATCCTGTTCATTCTGATGTCCACTTCCTGGGTGTGTCTAGcgtcttttttaattttttactaGATAACTGAAATGAATATTTTCAGTTGAATGAAATGATAAAACATCATTATATTCCTCTGTAGTAGAAATCTAAGTCAGTCCATCCATTCAATAGTTTTTATTCGTTCCTAGCTTGAACACTTCTCACTTTGGGTCATTTGTTGAATGTATCATTCTGTTAGTAATTCCAGCCAACAAACACGGTGTGTGTGCGTTCTCACATTTAGTCCCGAAGAGAAGTGTCTGTGTTGACTCACCTAAGGAGTCTTTAATATTAGAATGCATTCAATGCATATTCTCAGTTCTAATGAAGGCAAAAGCTTTAAATGTTCTACTCTTACTGAGTAAACACAATTTCCTAGAATTCCTGCCTCTCCCAAAAGCCACCTGAGGGTTTTAACCCCCATTTGTGTGCCCTGGTAGATTTACTAACCCTGTAAAGATATAAGCAATCATTTAGGGCAGATTCCTAACTTGATATGCCCGGATAACTCGTCTCCCATTGACATTAATGCACAATATTCAAAGGTTTGAGTTAACCCAGGTGTATCTCAGGTTAGGATTTGGCCCATACTTCTTGAAGTTCAAGCTGCATTTGTAGTGTAGAGGTCAACCACAATAATGATTGTGGAAAGCCTGATGGAGCTTAAATGTCTGGGGAAACTTAAATAATGTGATGAAGAAGATAACCACATAAAGACAACACGGTGTTCGATTTGTGGCTTCATCCGAAATGACATCCTATTCTCAATATAGGGCACTTATTTTTAacttagtgtactatataggcaatagggtgccatttcagatatGTCCCTGTGATGCTTGAGCTTTCTTGTCGACCATGTCATGACCAGCTCAAAGGGAGCCGACTTCGGAGGCTCTTAGACTTGAATGGAGCTGGTTAGCAATAACAGCCATGCATTATCCCTGTAATAAGTCATAAGTATAAAGTGATGTTTgcagcagagggaggagggacCCCAGTGCCTCAGGGCAAACTGTTGGTTTTCATTGGGCCTCAGTGTGTTGTAGATCAAATAGTTCCTATTTAACTAGAGTCACCTCATCTGAATGATTTGCCAGAAATGCACTTTAGCTGCTAAAAAGAACCATAGTAGACACAGAATAAACAGAAACGCAGAAGCTGGGGCCCAATGACAACTAATAACAATTCAACACCCTGTGCACCTTGGGTCCCCCGCCTCTTGAAAAGATTGTGATGGTCACCTGTTGTTACTTTTTCAAATATTGTGGTCTCTACCGGTCTGGAGACTGTACCACCTAGGTCAACCAATGAACCTAGTGGGGAAATAGAGAATATCTCTATCTTTTTGTTACATTCCTAAAGTAACATCTCACCCTTGAGAGAGTGAGCTGGagggcccacacacacacatacaaagcctTGTAAATATTAATGCACACTCTCGCTGAAGTGCTTACACACACCCTGCTTACAATTATACCCTgtacacacacccaaacacctTGCTTGGAGTATGTTCCAGCTATGAATGCTAAGGGTGGAGTTGCACTggacctgtctccctgtagcttcTCATTGGATCACTGAGCTGTCACTCAAATAGATCCTCCTATGGAAGAAGAGTGGAACCTACTGTACCAAAAGCCTGGACCAAAACAAAGCTCTTTAGAAAGTTCTTCCTTCCTTCTGCCTAGAACGCTATAAAGACGGAAAAACCCCAAGTGAAGGAAGGGCCCTGTATGAACTATATGAAACGGACTGTTGCCCATGTCCAATATGTCCCGCCAGCGTTGTGTTTTTATGTTACAGTTTTTTAATATGCTTGCCCTATGTACTGTCATCATACCCTAGTCACTGTAACTACTACCTTTAGAGTACACCTCATGCATTTGGCATTCTCTGCTAACTGAGGTGCCTGGATTGACTCCCTGTCCCTGTTACATGGtttttgagtttaaaaaaaaaagtctaaaCA

Function

NR:

description
xenotropic and polytropic retrovirus receptor 1 homolog

GO: NA

KEGG:

id description
K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966011.1 True 6137 mRNA 0.47 14 27518375 27561560

Neighbor

gene id symbol gene type direction distance location
LOC110508824 LOC106599165 coding downstream 1008 27512201 ~ 27517367 (-)
LOC110508822 LOC106599166 coding downstream 16739 27477023 ~ 27501636 (-)
LOC110508819 LOC106599582 coding downstream 201626 27303745 ~ 27316749 (-)
tox LOC106599578 coding downstream 275069 27141544 ~ 27243306 (-)
ppp1r7 ppp1r7 coding downstream 462559 27051258 ~ 27055816 (-)
LOC110508825 LOC106599162 coding upstream 30211 27591771 ~ 27595809 (-)
LOC110508831 LOC106599206 coding upstream 271800 27833360 ~ 27837602 (-)
LOC110508834 LOC106599151 coding upstream 347654 27909214 ~ 27924382 (-)
mrpl37 mrpl37 coding upstream 362207 27923767 ~ 27930096 (-)
LOC110508837 LOC106599149 coding upstream 371649 27933209 ~ 27937812 (-)
G2124290 NA non-coding downstream 9024 27509073 ~ 27509351 (-)
G2124278 NA non-coding downstream 46622 27471521 ~ 27471753 (-)
G2124268 NA non-coding downstream 57712 27460401 ~ 27460663 (-)
G2124266 NA non-coding downstream 58618 27459492 ~ 27459757 (-)
G2124257 NA non-coding downstream 81176 27436669 ~ 27437199 (-)
G2124319 NA non-coding upstream 3521 27565081 ~ 27565425 (-)
G2124322 NA non-coding upstream 7055 27568615 ~ 27568884 (-)
G2124324 NA non-coding upstream 7839 27569399 ~ 27569602 (-)
G2124325 NA non-coding upstream 8089 27569649 ~ 27570575 (-)
G2124335 NA non-coding upstream 25138 27586698 ~ 27586921 (-)
LOC110508791 LOC106568850 other downstream 1449166 25677135 ~ 26069268 (-)
G2122515 NA other downstream 1567922 25946733 ~ 25950453 (-)
G2121457 NA other downstream 2243749 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 2369855 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2783388 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 983381 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1065495 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1101148 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1130579 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1323908 28885468 ~ 28885854 (-)

Expression


Co-expression Network