LOC110508843 (LOC106599203)


Basic Information

Item Value
gene id LOC110508843
gene name LOC106599203
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27999061 ~ 28002198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589692.2
ACGAGGTACCAGCAGCACTGTGAGAGCAGTTATCTAACAAACTTTGAAGTGTTATTTTTAGACGAACACTAGCAACACTGACTCAAGGGGAGACAATCAGCATTCATTATTCGTTTTCGATAGTAAGAGGCTACTGCTACTGCCCGTAACATTTTGGATTATGATGGATGTAAGAACTCCTGTTCACTTTGGTGTTTCACTCTTATCGGTACTATTCACGATTGGAGCATCTGGGGAGGATTATTTCCCAGAGGCGCAgaatgttaaatgggtgtccaaTAACTTCAAGACTATTCTAACATGGGGCCCTGAACCCACCAACTACACATACACCGTTGAATTTTCTGAggtcgGCAAGGATAGACAGAGAAAACCCTACTGCATTCGGAGCTCGGGGACAGAGTGTGACCTCACCAACGAGCTGCGGAACCTGGAGGAGACCTACTCTGCCGACGTCCTATCAGAACCCCTGCCTGGCGTGAACTCTGACCTTGTAGAGTTCCCCTACACCCGGGCCGAGAGGTTCTGTCCCTACAAAGACACTCAAATAGGAGCACCGAGTTTCAACATCAAGCAGAGCGAAGACAAGACCAAGATGACACTCCACATACAGAACCCTCTCACTCCCATCTACAAAGATGACCAGCTGGTGACTATCAGAGACATCTTTAAGAATGACCTGAAGTACAACGTCATATACAACAAAGCCGGGAGCACAGGAAAGAAAGAGACAATGTCAGACCTGAGAGATGTCGAGCTGAACAACCTGGATAAAGGAGAGAGCTACTGCTTCATGGTGGCAGCCTATATCCCTTCCCGCTCTGTGGAGAAGAGACTTGGAGATTGGAGCAAGCCGCAGTGCTCACCCAGAGAGAGCAAGACCATCTTTGAGGAATTCCCCTTTGGTGTGATCGCAGGTGCCATTGCCATCATGCTGGCAAtgctcatcatcctcatcactcTAACCGTGGTGTGCTGCAAACACTTCTGCTGCATCAAAAAAGAAACTGTGGACAAGGAGAACCTGCAGTTGAGTCCAGTGTAAAGGTTTGTGTATGTATAGAGTACGTGTGTCTTATAAATAATGGTACTTCACTAAATCAACCCTTTCAGAGGGAGGGAGCTGTGCTTCCAATAATTTAGCACAAATGTGTCTTAACACTGGAAATGCATGAGGTCTGTGTTCACATTGCCTTTGTAAGTCTCATTATTAGCTGGTTCTTTTAAATGGGTAGATCATTTTTTACATGtcttatttatttgtttaataaTGTTGAACAATTAGATGAATCCttgagaaatatatatttttgccaCTATGTAGAAAAAACATTTAATTACTTCGCCACTTATTTATTTCAATCAATTTTATTctgttaaatatttatttttgtatgtCTAATATGTTGATGTATAGTTCATGTTGAATGGGATTTGTCCATATTGTGTGCTGTTGGAACATGGATTTGGTACTTTTGGATGTGATCACTGTGGTGCATTGTTGTACTTTTAATGTTGTTTTACAAGTAAATGGATTGACACGA

Function

NR:

description
tissue factor

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0007596 blood coagulation biological_process
GO:0006826 iron ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K03901 F3, CD142; coagulation factor III (tissue factor)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589692.2 True 1544 mRNA 0.43 6 27999061 28002198

Neighbor

gene id symbol gene type direction distance location
LOC110508841 LOC106599142 coding downstream 14925 27964886 ~ 27984136 (-)
LOC110508837 LOC106599149 coding downstream 61249 27933209 ~ 27937812 (-)
mrpl37 mrpl37 coding downstream 68965 27923767 ~ 27930096 (-)
LOC110508834 LOC106599151 coding downstream 74679 27909214 ~ 27924382 (-)
LOC110508831 LOC106599206 coding downstream 161459 27833360 ~ 27837602 (-)
LOC118944862 LOC106599141 coding upstream 42652 28044850 ~ 28068458 (-)
LOC110508200 NA coding upstream 191678 28193876 ~ 28367209 (-)
LOC110508849 NA coding upstream 396307 28398505 ~ 28403893 (-)
plppr5a LOC106599133 coding upstream 461283 28463481 ~ 28506939 (-)
LOC110508854 LOC106599121 coding upstream 630517 28632715 ~ 28639924 (-)
G2124567 NA non-coding downstream 1044 27997277 ~ 27998017 (-)
G2124562 NA non-coding downstream 4094 27994399 ~ 27994967 (-)
G2124520 NA non-coding downstream 54373 27943375 ~ 27944688 (-)
G2124521 NA non-coding downstream 57114 27941117 ~ 27941947 (-)
G2124408 NA non-coding downstream 254052 27740633 ~ 27745009 (-)
G2124618 NA non-coding upstream 82918 28085116 ~ 28086921 (-)
G2124663 NA non-coding upstream 139556 28141754 ~ 28141985 (-)
G2124826 NA non-coding upstream 361998 28364196 ~ 28364426 (-)
G2124852 NA non-coding upstream 380514 28382712 ~ 28382993 (-)
G2124872 NA non-coding upstream 393586 28395784 ~ 28396006 (-)
LOC110508791 LOC106568850 other downstream 1929852 25677135 ~ 26069268 (-)
G2122515 NA other downstream 2048608 25946733 ~ 25950453 (-)
G2121457 NA other downstream 2724435 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 2850541 25144062 ~ 25148520 (-)
G2120836 NA other downstream 3264074 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 542743 28544941 ~ 28551514 (-)
G2125253 NA other upstream 624857 28627055 ~ 28685735 (-)
G2125270 agla other upstream 660510 28662708 ~ 28663426 (-)
G2125290 NA other upstream 689941 28692139 ~ 28692470 (-)
G2125723 NA other upstream 883270 28885468 ~ 28885854 (-)

Expression


Co-expression Network