LOC118944862 (LOC106599141)


Basic Information

Item Value
gene id LOC118944862
gene name LOC106599141
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28044850 ~ 28068458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966771.1
TTTACCGCAGGTATCTCTCgcgctgcacactttttttttGGTCTAGAGGAGCTACTGCAACTCAAACTTTCTGTACGAACGCagatcctttctctctctccatctgctcgCTGAAGAAGCAAATTATCTCGGTTTAGAAGATTGACGGTTTCACACTGTTGTACGGAACTTGTTACTTTGTAACACAGGAACCTTGGAAGAAGCAGCAACTTTTGTTGCAAATTATTGACACagttttacatttgcaaaacaaagGACCATGACTCAATTCAACAAGGGACCAGTGTACGGGTTGACTGCAGAATTGAGAAGCAAGATCGCAGGGAAGTATGACCTGCAGAAGGAGGAGGAGCTCCGGTTTTGGATTGAGGAAGTGACGGGCATGCCCATTGGAGAGAACTTCCAGAAGGGTCTTAAGGACGGAGTCATCCTCTGCGAGCTGATAAACAAACTGCAGCCTGGTTCCATCAAGAAAATCAACCACTCCAAACTCAACTGGCATAAGCTGGAAAATCTGGGGAATTTCATCCGAGCCATTCTGAAGTTTGGCCTTTGTCCCAACGACATCTTTGAGGCCAATGACCTGTTTGAGAATGGGAACATGACCCAGGTCCAGAGCACACTGCTGTCCCTGGCTGGTGTGGCGAAAACCAAAGGTTCAAACTCCAACTGTGACCTCGGTGTGAAGTATGCGGACAAGAGGACGCGCCATTTCGACGAGGAGAAAATGAAGGCTGGACAATGTGTCATTGGACTGCAGATGGGGACAAATAAATGTGCCAGCCAGTCTGGTATGACAGCATACGGGACCAGGAGACACTTATACGACCCAAAGTCACAGACGGACAAGCCCTATGACCAGACTACCATCAGTCTGCAGATGGGAACCAACAAAGGAGCCAGCCAGgcTGGCATGTCGGCGCCGGGTACCCGCCGTGACATCTACGACCAGAAGTCGGcaggacagacagcagacagCTCCACCATCTCCCTGCAGATGGGCACCAACAAGGTGGCTTCCCAGAAGGGAATGAGCAGCTACGGCCTGGGCAGGCAGATCTACGACCCCAAGTACTGCACCTCCTCCACGGAGCCCACCTCTCCCGTTACCCTCGGCAACAATGCCGGTAGCCATGGCAATGGGAGCCTAGGAACGGGAACCAATGGATCGGAGATTAGTGACAGCGACTACCAGGCGGAGTACCAGTATCACCATGACGACGAAGAGGAGTACCGGGGTGGGTACCAACAGCAGTACAGCGGGCACTATGACGAGGACCAGGGCATCGACTATTAGACTGACTGtgtgtcaaatggcaccctattcccctctaCAGGGTGTCATTTTATATTTTCCTGTTAGACTCTGTGGGCCCCATTTTGGCAGCTAAAAAATGTGCGCTTGTTTTGACAACAGCGCTTTTTTTTTGCGTTGTCAAAAAGTCACCCTGTGTAGTAGTAGTCCCAGTTGACATAAGTGTAACACAATGTGTCTGGGAATATGTGACGTTATAGTGGCCTTCTACCGGAATTGGAGTGGAGAAACATGTCCAAGTACCTTTATGGATCATATGAaccataggcctatatatttaGTTTGATACAGTTTTGTGGGACCACTTATGATGACGTTTTTTAAACTGATGCAAATTGTGTTACTCTAGTATTACTGTAATATAAAGAGTGTTGAGAGAGAGTGATTTTGTTATCAACAGAGCAAGAATTTTACTATCCTTGCTagcttttttaaaaacaaatgttttttgtcctatacagttgaagtcagaagtttacatacactttggttggagtcattaaaacttgtttttcaacca

Function

NR:

description
calponin-3-like

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966771.1 True 1835 mRNA 0.47 7 28044850 28068458

Neighbor

gene id symbol gene type direction distance location
LOC110508843 LOC106599203 coding downstream 42652 27999061 ~ 28002198 (-)
LOC110508841 LOC106599142 coding downstream 60714 27964886 ~ 27984136 (-)
LOC110508837 LOC106599149 coding downstream 107038 27933209 ~ 27937812 (-)
mrpl37 mrpl37 coding downstream 114754 27923767 ~ 27930096 (-)
LOC110508834 LOC106599151 coding downstream 120468 27909214 ~ 27924382 (-)
LOC110508200 NA coding upstream 125418 28193876 ~ 28367209 (-)
LOC110508849 NA coding upstream 330047 28398505 ~ 28403893 (-)
plppr5a LOC106599133 coding upstream 395023 28463481 ~ 28506939 (-)
LOC110508854 LOC106599121 coding upstream 564257 28632715 ~ 28639924 (-)
LOC110508857 LOC106599111 coding upstream 637630 28706088 ~ 28753683 (-)
G2124567 NA non-coding downstream 46833 27997277 ~ 27998017 (-)
G2124562 NA non-coding downstream 49883 27994399 ~ 27994967 (-)
G2124520 NA non-coding downstream 100162 27943375 ~ 27944688 (-)
G2124521 NA non-coding downstream 102903 27941117 ~ 27941947 (-)
G2124408 NA non-coding downstream 299841 27740633 ~ 27745009 (-)
G2124618 NA non-coding upstream 16658 28085116 ~ 28086921 (-)
G2124663 NA non-coding upstream 73296 28141754 ~ 28141985 (-)
G2124826 NA non-coding upstream 295738 28364196 ~ 28364426 (-)
G2124852 NA non-coding upstream 314254 28382712 ~ 28382993 (-)
G2124872 NA non-coding upstream 327326 28395784 ~ 28396006 (-)
LOC110508791 LOC106568850 other downstream 1975641 25677135 ~ 26069268 (-)
G2122515 NA other downstream 2094397 25946733 ~ 25950453 (-)
G2121457 NA other downstream 2770224 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 2896330 25144062 ~ 25148520 (-)
G2120836 NA other downstream 3309863 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 476483 28544941 ~ 28551514 (-)
G2125253 NA other upstream 558597 28627055 ~ 28685735 (-)
G2125270 agla other upstream 594250 28662708 ~ 28663426 (-)
G2125290 NA other upstream 623681 28692139 ~ 28692470 (-)
G2125723 NA other upstream 817010 28885468 ~ 28885854 (-)

Expression


Co-expression Network