LOC110508851 (LOC106599130)


Basic Information

Item Value
gene id LOC110508851
gene name LOC106599130
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28522217 ~ 28551515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966703.1
TTAGCATTTTCCTTCTCGAGTCGTTCCACATCGTTGTCACCTGCAAACACTAAATACTCACAAGGAATGTAATGTAATATTTGGAACATGTTTCTGCCCTCTAGATATCTAAATACGCACAATGTTTTGAATTGTATCATTTGGTTTTGTGGCTGGTTTCGATACAGTGATTTTTTGCGCGAGTGACTGACTGCAGTGGAGCGGTTCCTTCAACACAAGCGCGACACTTGGCGATGGAGCAGAAACCACCAGCTACAGAAGCATAATCTCTTACATTGCCAAAATTACGGGCGGAATTAAATACAACTCTCTGTCTCCGGCCTCtcaaaggagagacaggaggttCATCATGTCTGCAAAAGAGAGATTAAAAGGGAAGATGACCAAAGACAGCGTTACCTTACTGCCATGTTTCTATTTCGTTGAGcttcccATCCTGGCCTCTTCTGTGGTCAGTCTGTATTTTCTGGAGCTGACAGATGTGTTCAAACCGGTGCGGTCAGGTTACAGCTGCAATGACCGAAGTCTGAGCATGCCCTACATCGAGCCCGCTCAGGAGGCCATCCCCTTCCTCATTCTCTTCAGTCTGGCCTTCGCTGGACCTGCAGCCACGATAATGATAGGAGAAGGTATCCTGTATTGCTGTCTGTCCAGGAAAAAGAGTGGGGTCAAAACAGAGGCCAATATCAACGCAGCCGGCTGCAATTTCAACTCGTATATACGGCGAGCTGTTCGGTTTGTTGggGTTCATGTATTTGGCTTATGCATCACGGCTCTCATCACTGACATCATCCAGCTGTCGACGGGTTACCACGCCCCCTACTTCCTGACAGTGTGTAAACCAAACTACACCATACTCAACATGACCTGTGACGACAGCTCCTTCATCATAGAGGACATCTGTTCTGATGGAGCAGACCCAGCCGTCATCAACTCTGGCAGGAAGTCCTTTCCCTCGCAGCATGCTACTCTGGCTGCCTTCGCTGCTGTCTATATCTCTatGTACTTCAACGCGACGTTGACAGAATCCTCCAAGCTGCTGAAGCCCCTGTTGGTCTTCTCCTTCATCATGGGTGGCATCATCTGTGGGCTGACCCGCATCATCCAGTTCAAGAACCACGCCATCGACGTCTACTGTGGCTTCCTCATCGGAGGAGGGATCGCCGTCTACCTGgGTCTGAATGCAGTGGGTAACTTCCAGCCCAGTGAGGACACATCCAGACAGCAGCCCCAGCCTCCCCCGCTCCGAGAGCCCCCCAGGAGCAACACTGTGCCCAACGTCAGCCAGAATGCAGGTCGCCACCTGCAGCCCAACAGCCTCAACAGCATGAACAGCCTAAATAGCGTGAGCACAGCGGACGGCCTCACCGCGGCCCACCCCGAGACCATCCTGACCCGGGTGCCCTCCTGCCGCGAGTCCAGCTCCCTGAATAATCTGAAGAGGGCCAGCGCCGATTTGGAGTGCATCACCCCGCCGAGTCCCATGGGGAAACAGGACTGTCTGGTGACCTTTAACAGTAGCACGTTACCCAGGTCACATGGTGGCTCACTACCCGAGGAGCACCGCGTCCCTCGCCGCCACGCCAGCATCCACTCCTCCATGGACTCCACGCGCTCCAAGCAGCTGCTGTCTCAGTGGAAGAGCAAGAACGAGAACCGGAAGCTCTCTCTTCAGGTGATGGACAGCGGGGTGGTTGTGGGACGCCACCAttcaacatcctcctcctcctcgcctcAGAGGACCATGGAGCTGAGGTGCAGCTCTGAGCCATCCGCCATGGGCCTGGAGGCAGAGCTTCGTGCTCAGGGACACATCCCCGCCCAGTACATGAAGCTGGCAGCCAGCACCGTGCCACTGTCCAACCACCTCCCCCACAACGGGGGCAGCAGTGGCCTGGCAGGGGGGGCCCGCGTGTCCATCCAGTCCCGGCCAGGCTCCTCCCAGCTCGTCCACATCCCAGAGGAGACGCAGGAGCACGTCAACAGCGGCACCTCCAGTAGGGAGGACGAGGATGATGACGACAGGGAGGATAACTATGGCGGCGGTGGGATTCCTGGTGGGGGAGGCTCGGTTCGCTCCAAGTGGCTGAAGGAGGGCGCCCCCTGCAGGACTAACAGTCTAACTAACCAGCCACGCATCATGCAGGTCATCACCATGTCCAAGCAGCAGGGTCTGCTCCAGCACGGCAGCCCCAAGAGCTCCGAGGACGGCAGCGTGGTCAGCTGCACAGGCTCCATCCAGTACAAGGCCCTGATGGACCAGGAGGCCGGCCAGGGGATCGTGAGGGTGGAGGCCCATCCAGAGAACAAGCCTGTGATCAAGCCTCCGGACGGCAGTGGCTCCTGGAGGTGGAAGCCCCAGGAGCAGCGTGGCAGCATCCGCCAGGCCTTCGAGCTCAACGACCTCAACCGTGACACGGAGAGCTGCGACTCGCTCAAGGACGGCTACGGCTCCTTcgatggcaggaggagccagaCAGGCACCGACACCGGCAGCGAGCATGGCGGTGGCAGTGGGGGAGGCGGTCACCCACACGTGCACCAccctcactaccaccaccaccaccacccccaccaagGCATCACCACCATCCGTGTGACCCCTGTggagggactaggaggaggaaGTGAGGCCGCCTCCGAGACCCTCTCCATCGCCTCCAGCAGGGAGTCCACCCTGCGGAGAAAAGGCAACATCATCCTGCTCCCGGATAGAGGTCAGAGTCCAGACAACTCCAGGAACTATTTCAAAGGGACCTCCCCCACACCGCCCCCCACCCTGGGACTGGCCTATAGAGAGTGAACAGCTGCCCCAGTCATCCCTTACCCTTACCATTCCCCCTTACCGCCCATGTGGTGGCCTATCTGTCCCCCCATGAGTGGCCTTCTACACTGGGTCTAGTCTGGAACCCACAATAGGACCATTGAACACATTCAGCTACGACTGTATATTATCAAACCCATCATGGATTCAGTGGTGTTAACTGGGCTGGCTTACCTTTTCCAGTGCCATTCTGAAGGTCATAATTCATTAGCTAGCTCAGTGTGTCTAGTACAGGAAGGCCACTACAGTGTTTTTCCATTCTGcaaaaatctgttttttttttttgttttcagcAGTTTGTTGTTAGACTTGGTTTGATAGGACCGGattaaatgtatgtgtgtgttctttgagAAAtgcagtaaaaatatatatattttaatgaagTAAGCTTTATGTGACAGATTTTTGAGTGCAGACCCATTTCACCTCGTTGTTTGTCTGAATTCGTGGTTTTTACGCACCAGCCAAGCACCATGGTTCTTTTTTGATTTGAAAATGAAACTCTATCACACACAATGGTCCTTTAAGAATGCAGGAGATGCTGGAATAATCGCCACAAAGTCATTTTGCGCACACCTTTCAAACCTTATTTCATTACATAAACTTCCATTTGACAAGCACAAGTACTAACTCTTTTAATACAATGGCTATAGTGGTTTTAACTTCGAATTTGATACTATTTGTTATCAAATTGCAAGAGGCTTTGATGGCAATGAACCATGCAGGTTATGTATTAAGTTGATGGACATGATGTTTTGTAGGCCTTTTCCATTGATGTACTGTGCGCTTTCTCAGCAACATATAAATGTCCTTGTGTAATGTGACCATGATTGGGTGTTGCACTGCATAGCAACACTGGAGGGGCTTTTCATAAGACGACGAACCATGACAATtgtgaaaatacatttttatattttttgctATGTACATATTTATAGTTCCCCCGATTGATCTGCAACAATATTCAGATGTCTTCATTGGCTTATTACTAATTATTGATAGTCTATTTTAACAAATATGGGTTtattcaatgttgttgtttttagaaCTTTTGCGGGATATGAATTTGTTTGGCAGGTGATTTACAACAGAGCAATGTTTTAAGAAATCACCAAATATTATCCATGGGTTGCAAAATTCCGTTAACTTTCCACAAATTTCCTGGTtgtccagaaatcctggttgaattCCCTCACGACTCCAGGGTtcttccaactgggatttctgtaaaacctgggaattttggggaAATGAACATCATTTTGCAACCCTAATTATCGCTGTGAACACACCAGTCTTTCCCTGTGCTTTAGCCACACATTGTATCCCTCGAACAGTATAACATGCTTTTCTTAGCTTACAAGGGCAGCAAATGAAGTATGTTAATAGGGGCAGTGGATACAGTATGTAAGACAATATATTTCTAGGAGCAGTGGATTAACTATGTAAGATAATTACTTACCAGGAGCAGTGGATACAGTACCTTAATCAAATTAGTTTTGCTTAAAGACTGGAAATTCAAGAGGAACTTTACACTTTGCATCCTGTATTGCCTTTGACGAAGTATACTAACAAGTATTCGCTGTTTTTTGATACATACAGTGACCTTTTTCCTATTAGCAACCTGTATGGTAGTTtaagaaaatgtttgtttttttctgcaAAATGTTTAACAGCTGTACAAGTTTTTAATGCTACTCAAATATGTTTTAAGTAAATGTATCTATTGATGAGTGACATAAAAGGGAAACCACTCTCGGTAGAGGCTGCTCTTCCTGGTACATTGATATGTGCACAATAATTGATTTAATTGTCCAGTTTGATTTTCCCGATTGGACAATGTGGCAGCACAGCCTGTGCTGGGAACTTTGGTTATGCTGTTAGATTAAAATCAATCATACATTAGTGTTCCTTGGGCGATAATGAACCATGCACGATTCAGGACTGAGGAGAGGTTGTATAATGGCAATagcatccctctccctcccacaagAGAACAGTAAACAAGTGAGTCATACTCAGTATCCAAACTATGTAAGTGCAAAAATAACATTACAAACACTACCATTGATTAGTGGCACTGTAATTCTAACATTACTCTATGTGTGTTATATGCTGCCATTGAACAATATAATTGTTCAATGAAAACCTTTCAATGATTTTTATCCCGTTTGTTGTGCAAAGGTAGGGCCAATCAACAATACATGAATGAAAGTGTGGCTTTTACagtacatatttatttatttatttcacctttatttaaccaggcaggcaagttgagaacaagttctaatttacaattgcgacctgtaTAGTATACTATGCTGCAGAggaagctggtgggaggagctataggaggatgtgctcattgtaatgactggaatagaataaatggaatggtatcaaacacatcaaacatacggAAGCATATGGAAACCATTTttttcattccagccattacaatgagcccgtcctcatatagctcctcccaccagcctctgaTACCTTTATAAAACTGCCAAGAACGTACTGTTCATATACATCAGGGGTCTCAAAGACATTTCACCCAGTTCCACATTCTGTCTTTAATGAGGCCTGTCAGTTTGAGATCCCTGATATACAGTGCTATGTGCATAGAACACTAGCTTTACTCATGACACCTGAGATAGCTACAATAGTGTTTACACTCGTTTTTACAGTGGTCATAATATGCCAGTTGCATTTGGATTACCAATATAATTCATGTATTGAGCTTGTTTGTGTTTGTACCAGAGGTTGGAACTGAAATTCTTTTCCAATCGTTTCGTTCTGAACAGTACCAAccattctttttttgttgttcctTTATACTGTTCCGACCAGCTAAATAAAGTTCTGAAACGGTTCGAACCCCAAAAATGGTTAATATcgtttctgttcctttttaaaccttttaaaatatatatatatttaaatgacTTAATCAATCAgtggatagagcagcttgctatggagctATAGGTGTTTACATTGGACAGACAACTGTAGGTTGTGAGATGTGACAGAAATTTTGCGGGTggggagagaacaagagagggtgGAGGTGGCTTGGCTTGAAACACTGGGCATCTTGTTAAGACATGCATGATCTCAATTAGGCCTACAGAATTGTAGGAGGGGCTTCTATGGAGGAAcattgaatgtctttgaacttccgaGAGTTGGTTtaacgttggaccagagctagcttgtaagcttgtgtgtgcagagcggcacCAGAATAATAAATAACAAACACGTCctacctttttgtagttaataaatccaatgtgaaacgtaATTACTATAGTATCCTTAACAAGCATTGAAATAGTGAATCCATTCTTCTCCAATTAAAAATGTTTCTCCCTAATTTATGAATCACGCTAGTAATGTAAGTAGGCTGCAGTAGCCTATGCTTCAGAtgggaggggcaggtagcctacacacgtacacacacaggcaAAGATTTTCATCTGTGTCTCCCGATGGCatggtggtctaaggcactgcagtgctagctgtgccactagagattctgagtttgagtccaggctccagacccatagggcggcgcacaattggcccagcg
>TU2429614
CCTTCTCGAGTCGTTCCACATCGTTGTCACCTGCAAACACTAAATACTCACAAGGAATGTAATGTAATATTTGGAACATGTTTCTGCCCTCTAGATATCTAAATACGCACAATGTTTTGAATTGTATCATTTGGTTTTGTGGCTGGTTTCGATACAGTGATTTTTTGCGCGAGTGACTGACTGCAGTGGAGCGGTTCCTTCAACACAAGCGCGACACTTGGCGATGGAGCAGAAACCACCAGCTACAGAAGCATAATCTCTTACATTGCCAAAATTACGGGCGGAATTAAATACAACTCTCTGTCTCCGGCCTCtcaaaggagagacaggaggttCATCATGTCTGCAAAAGAGAGATTAAAAGGGAAGATGACCAAAGACAGCGTTACCTTACTGCCATGTTTCTATTTCGTTGAGcttcccATCCTGGCCTCTTCTGTGGTCAGTCTGTATTTTCTGGAGCTGACAGATGTGTTCAAACCGGTGCGGTCAGGTTACAGCTGCAATGACCGAAGTCTGAGCATGCCCTACATCGAGCCCGCTCAGGAGGCCATCCCCTTCCTCATTCTCTTCAGTCTGGCCTTCGCTGGACCTGCAGCCACGATAATGATAGGAGAAGGTATCCTGTATTGCTGTCTGTCCAGGAAAAAGAGTGGGGTCAAAACAGAGGCCAATATCAACGCAGCCGGCTGCAATTTCAACTCGTATATACGGCGAGCTGTTCGGTTTGTTGggGTTCATGTATTTGGCTTATGCATCACGGCTCTCATCACTGACATCATCCAGCTGTCGACGGGTTACCACGCCCCCTACTTCCTGACAGTGTGTAAACCAAACTACACCATACTCAACATGACCTGTGACGACAGCTCCTTCATCATAGAGGACATCTGTTCTGATGGAGCAGACCCAGCCGTCATCAACTCTGGCAGGAAGTCCTTTCCCTCGCAGCATGCTACTCTGGCTGCCTTCGCTGCTGTCTATATCTCTGTAAGTAATCCAgctacaagcacacacacacacacacacacatactgtaggggtacacacgcatacacacacacagaaacacacacacacacatacctcctC
>TU2429610
TTTGAGATCCCTGATATACAGTGCTATGTGCATAGAACACTAGCTTTACTCATGACACCTGAGATAGCTACAATAGTGTTTACACTCGTTTTTACAGTGGTCATAATATGCCAGTTGCATTTGGATTACCAATATAATTCATGTATTGAGCTTGTTTGTGTTTGTACCAGAGGTTGGAACTGAAATTCTTTTCCAATCGTTTCGTTCTGAACAGTACCAAccattctttttttgttgttcctTTATACTGTTCCGACCAGCTAAATAAAGTTCTGAAACGGTTCGAACCCCAAAAATGGTTAATATcgtttctgttcctttttaaaccttttaaaatatatatatatttaaatgacTTAATCAATCAgtggatagagcagcttgctatggagctATAGGTGTTTACATTGGACAGACAACTGTAGGTTGTGAGATGTGACAGAAATTTTGCGGGTggggagagaacAACACTGGGCATCTTGTTAAGACATGCATGATCTCAATTAGGCCTACAGAATTGTAGGAGGGGCTTCTATGGAGGAAcattgaatgtctttgaacttccgaGAGTTGGTTtaacgttggaccagagctagcttgtaagcttgtgtgtgcagagcggcacCAGAATAATAAATAACAAACACGTCctacctttttgtagttaataaatccaatgtgaaacgtaATTACTATAGTATCCTTAACAAGCATTGAAATAGTGAATCCATTCTTCTCCAATTAAAAATGTTTCTCCCTAATTTATGAATCACGCTAGTAATGTAAGTAGGCTGCAGTAGCCTATGCTTCAGAtgggaggggcaggtagcctacacacgtacacacacaggcaAAGATTTTCATCTGTGTCTCCCGATGGCatggtggtctaaggcactgcagtgctagctgtgccactagagattctgagtttgagtccaggctccagacccatagggcggcgcacaattggcccagcgtcgtccgggttagggaagggtttggccgggatatccttgtcccatcacgcactagcaactcctgtggcgggccgggcgcagtgcacgctgacacagtcaccaggtgtacggtgtttcctccgacacattggtgcggctggcttccgggttaagtgggcattgtgtcaagaagcagtgcggctttgttgtgtttcggaggacgcacggctctcgaccttcgcctctttcGAGTCCGTAcaagagttgcagcgatgagacaagactgtaactactaattggataccacaaagtaaaaaaataataatttaagacTTTCAGCTGGCAgtcaggcagacactggaatgtgtttctgagtgacagagtgagggctttgtATAGGCACTTTGTAGCATTTTTTTGTGGGACAGAAAAAAACATGCCTGGAGCATAAAATAACGTTATTAAATGGTTCCCATCCTTTTAAAATAAGAGTTATGTTCCGGAACAGTATAAATCACTTTCATTCccggttctgattctgttccttgaaaaatgttgtttatttccagtttttggttctgttccctgagCTGGTTCCAACTCCTGGTTTGTACACAATAATACAAAAGTAAGACTGGATGTATACATTTTAGATATTGTTGAACATTTCTATCAATAATCAaggttttcttttttttccattGAAACTGAATTGATATTATATAAATATTACACATATTTTTTACTTCTCAAAGGGTATATTAGCAGCGACAACTGAAGGGAAAAATTGGTATATTTTCCTGTATACTTGTACCTTCGATGATGGCTTTAAACTGTGGTCATATCTGCATGGTCATTTTATATGTACTGTATCTAAAGGCTTATTTTCTGTATATGACACCTTTTGAAAGTTATGGCTGGTACCTTGATTTATACCTACTcaattcatcaatcaatcaaccaattgATTAACTCTTCATTCTTTCTATCACTGTAAATACAATCTTTGTAACTTTGCCATGCAGACAATGCTGTTACAGTGTAGAGTAGGTAGGACAACATATCTACAGAAAGAAATCAGGTTTGGCAGAAGAAGATGTTTGACGTTTAGGCAGAGGATGTATTTGTATAGACTTGagagcatagaaatagaatttaTAGAAATATAATCTAGTCATTATATTTCCATGGTTGCTAGGTCAGTTGGCTTCATTATACATCTGTAAGATTGGCCTGTGTGCATTCAGAATAGACGTGGTGATTGGTGGATAGCGTGGTTGCTAACGAAACAGACGTCTCCGTCAGAAGTCACTCTGTATTTCACCATTCTATGAGGTCGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966703.1 False 6437 mRNA 0.47 7 28522217 28550195
TU2429614 False 1092 TUCP 0.48 5 28522227 28538412
TU2429610 True 2300 lncRNA 0.40 2 28549188 28551515

Neighbor

gene id symbol gene type direction distance location
LOC110508848 LOC106599136 coding upstream 351907 28160483 ~ 28170310 (+)
rwdd3 rwdd3 coding upstream 409640 28105364 ~ 28113908 (+)
LOC110508846 LOC106599140 coding upstream 418307 28090839 ~ 28103910 (+)
LOC110508844 tm56b coding upstream 435022 28079201 ~ 28087195 (+)
LOC110508842 LOC106599146 coding upstream 523806 27984309 ~ 27998411 (+)
palmda LOC106599129 coding downstream 42789 28592984 ~ 28609915 (+)
LOC110508852 LOC106599122 coding downstream 61294 28611489 ~ 28622256 (+)
LOC110508853 LOC106599119 coding downstream 89943 28640138 ~ 28649444 (+)
agla LOC106599117 coding downstream 104177 28654372 ~ 28685734 (+)
LOC110508856 LOC106599115 coding downstream 144160 28694355 ~ 28704608 (+)
G2124938 NA non-coding upstream 56437 28463529 ~ 28465780 (+)
G2124937 NA non-coding upstream 59647 28462240 ~ 28462570 (+)
G2124936 NA non-coding upstream 64828 28457092 ~ 28457389 (+)
G2124933 NA non-coding upstream 66578 28455408 ~ 28455639 (+)
G2124929 NA non-coding upstream 68821 28452972 ~ 28453396 (+)
G2125050 NA non-coding downstream 56238 28606433 ~ 28607639 (+)
G2124982 NA non-coding downstream 57633 28607828 ~ 28608575 (+)
G2125043 NA non-coding downstream 74202 28624397 ~ 28624953 (+)
G2125058 NA non-coding downstream 74794 28624989 ~ 28625331 (+)
G2125115 NA non-coding downstream 210511 28760706 ~ 28761145 (+)
LOC110508827 LOC106599210 other upstream 798229 27720549 ~ 27725061 (+)
G2123170 NA other upstream 1412935 27106034 ~ 27109282 (+)
G2123174 NA other upstream 1417947 27101312 ~ 27104270 (+)
G2123101 NA other upstream 1577030 26942200 ~ 26945187 (+)
LOC110508797 LOC106599544 other upstream 1833711 26679791 ~ 26688506 (+)
LOC110508880 NA other downstream 720590 29270737 ~ 29274454 (+)
G2125614 LOC106599059 other downstream 770548 29320743 ~ 29323384 (+)
G2126497 NA other downstream 1660052 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 1984656 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 2090492 30640687 ~ 30641243 (+)
LOC110508851 LOC106599130 other upstream 10776 28522217 ~ 28551515 (+)

Expression


Co-expression Network