Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508860 |
| gene name | LOC106599100 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 28817604 ~ 28840725 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: nucleoprotein TPR-like isoform X2 |
| id | description |
|---|---|
| K09291 | TPR, MLP1, MLP2; nucleoprotein TPR |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021589728.2 | False | 8065 | mRNA | 0.57 | 47 | 28817604 | 28840725 |
| XM_021589729.2 | True | 8062 | mRNA | 0.57 | 47 | 28817604 | 28840725 |
28,808,000
28,812,000
28,816,000
28,820,000
28,824,000
28,828,000
28,832,000
28,836,000
28,840,000
28,844,000
28,848,000
28,852,000
28,856,000
NC_048592.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dusp12 | dusp12 | coding | downstream | 57424 | 28757578 ~ 28760180 (-) |
| LOC110508857 | LOC106599111 | coding | downstream | 63921 | 28706088 ~ 28753683 (-) |
| LOC110508854 | LOC106599121 | coding | downstream | 177680 | 28632715 ~ 28639924 (-) |
| plppr5a | LOC106599133 | coding | downstream | 310665 | 28463481 ~ 28506939 (-) |
| LOC110508849 | NA | coding | downstream | 413711 | 28398505 ~ 28403893 (-) |
| LOC110508863 | LOC106599199 | coding | upstream | 20000 | 28860725 ~ 28862370 (-) |
| LOC110508862 | LOC106599098 | coding | upstream | 53090 | 28893815 ~ 28901239 (-) |
| LOC110508212 | LOC106599092 | coding | upstream | 142374 | 28983099 ~ 29003237 (-) |
| LOC110508867 | LOC106599198 | coding | upstream | 185283 | 29026008 ~ 29028895 (-) |
| LOC110508868 | LOC106599087 | coding | upstream | 204841 | 29045566 ~ 29073745 (-) |
| G2125685 | NA | non-coding | downstream | 6331 | 28810997 ~ 28811273 (-) |
| G2125684 | NA | non-coding | downstream | 7524 | 28809859 ~ 28810080 (-) |
| G2125660 | NA | non-coding | downstream | 41948 | 28773890 ~ 28775656 (-) |
| G2125659 | NA | non-coding | downstream | 43945 | 28773417 ~ 28773659 (-) |
| G2125336 | NA | non-coding | downstream | 48787 | 28768579 ~ 28768817 (-) |
| G2125696 | NA | non-coding | upstream | 3914 | 28844639 ~ 28844878 (-) |
| G2125698 | NA | non-coding | upstream | 10061 | 28850786 ~ 28851029 (-) |
| G2125699 | NA | non-coding | upstream | 10422 | 28851147 ~ 28851350 (-) |
| G2125708 | NA | non-coding | upstream | 24442 | 28865167 ~ 28865549 (-) |
| G2125725 | NA | non-coding | upstream | 46612 | 28887337 ~ 28888071 (-) |
| G2125290 | NA | other | downstream | 125134 | 28692139 ~ 28692470 (-) |
| G2125253 | NA | other | downstream | 131869 | 28627055 ~ 28685735 (-) |
| G2125270 | agla | other | downstream | 154178 | 28662708 ~ 28663426 (-) |
| G2125203 | LOC106599130 | other | downstream | 266090 | 28544941 ~ 28551514 (-) |
| G2122515 | NA | other | downstream | 2867151 | 25946733 ~ 25950453 (-) |
| G2125723 | NA | other | upstream | 44743 | 28885468 ~ 28885854 (-) |
| G2125813 | NA | other | upstream | 237314 | 29078039 ~ 29078744 (-) |
| LOC118944842 | NA | other | upstream | 277959 | 29118684 ~ 29123806 (-) |
| LOC110508917 | LOC106598978 | other | upstream | 1560488 | 30399711 ~ 30401807 (-) |
| G2127177 | NA | other | upstream | 1593710 | 30434435 ~ 30434854 (-) |
