LOC110508862 (LOC106599098)


Basic Information

Item Value
gene id LOC110508862
gene name LOC106599098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28893815 ~ 28901239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589730.2
tgcgtttagtTAATATTTCACTCATAAACAGGTATTACTAACTCTTGCAAGTAAGTATTCAAATAACTAAGAATAACATAACAACATAAAATAGGTTAGCTATTAATTAAGGACGTAAAAGACAAATGACATCGGTAATTACAACACCATGACACATTTGGCCACATGTTGGCGCCAAATGACAATAAATTCTTCCCGCCGTCCATATATAGTTTGTATGAACAATGATCGCCTTAATTTACTGGTAATTGCTTTGGAAGACTGTCCCTATTGCTTGTGGAGATATGCTCTGATGAAGGTCGACTGAACGAAAGCTTTTTGTCAGAAATTAATATCTGACAAGAAGTGTGTGGAGACGTTTTCCTGTGTCTTCACTAATCGATTTTGGATTAGTCTTTAGAAAATGTGTTACTTTTGTTATCAATCTTTATacaatataataaaaaaaaagaagacaacCTGATGTTGGCTACAGTGATTGAATACACTGTAAATACAGAAAcgtgtattgtattgttttaaATGACCACACTGTGTGGATGTCAATGTTAACTGGATGCAGAATAGACCAAATGCCTCCATGAGGAAGATGATTGGTCCAATTTTTCCGCTCACCTCTGGTCCTGGCCGGTTCCCTGACTTTATTAGCGTAATAGTTTGCGTAAGAGTTTGGGATGAGCATCGTACATAAATATGGAGCAGGCATCCAAGAATTTCAGAATCACTGTTACGAGGTGTGAGCTGTAGTCGGCTGGAATTTTACACCGGATTGCGATTCAATAGAATCTTTCGGAATGAATAAAGTAATCTGCGTTGTTTTGCTCTCTAACGTCTGGATCTATTTCTGCGAAGGAGTGGACCCTTGCTGTGCACAACCATGTGAAAATAGGGGCTTATGTAATTCAAAAGGCTTCGACGACTATGAGTGTGAATGCACAAGAACTGGATATTATGGAAAGAACTGCACAACTCCTGAATTCCTAACATGGATAAAGATATCATTGAAACCAGCCCCGAACACTGTGCACTACTTCCTTACACACTACAAAGGGGTGTGGAATGTCATCAACAAGATCAGTTTTGTGAGAAATGCTATCATGAGCTATGTCTTGACATCCCGCTCACATTTGGTGGACAGCCCACCGACTTACAATTCTGATTATGGCTACAAGAGCTGGGAAGCTTACTCCAACCTGTCTTACTATACACGGACCCTTCCCCCATTGCCAAAGGGCTGTCCTACACCTATGGGAACTGCAGGAAGAGCTGTGCTTCCAGAGGCCAAGCTTGTGGTGGAGAAGGTTATGTTGAGGAAGCGGTTCATTCCGGATCCTCAGGGTTCCAATCTCATGTTCGCCTTCTTCGCCCAGCACTTCACCCACCAGTTTTTCAAATCAGACTTCAAAAAAGGACCAGCTTTCACCAAAGCCTTGGGCCATGGCGTGGACTTACACCATGTCTATGGAGACACTCTGGAGAGACAGCACAAGCTGAGGCAGTTCAAGAATGGCAAACTGAAGTATCAGGTTGTGAATGGCGAGGTCTACCCCCCATTGGTAAGGGAGGTTGGGGTCGAGATGCACTATCCACCCCACGTGATCGAGGAGCACCGCTTCGCCGTGGGCCACGAGCTTTTCGGCCTGGTCCCCGGTCTCATGATGTATGCCACCATCTGGCTGAGAGAGCACAACCGCGTCTGTGACGTCATGATGCAGGAGCATCCCGAATGGGACGACGAACGCATTTTCCAGACCACACGCCTCATCCTAATTGGCGAGACCATAAAGATCGTGATCGAGGACTACGTCCAGCACCTGAGTGGCTACCACTTCCAGCTCAAGTTCGACCCGGAGCTCCTGTTCAACCAGCGCTTCCAGTACCAGAACCGTATTGCAGCTGAGTTCAATACCCTGTACCACTGGCACCCACTAATGCCTGACACCTTCAACATCGAGGGCCGCGCCTACACCTACCCCCAGTTTGTCTTCAACAACTCCCTGGTTACAGAGCACGGCATCAACAACCTGGTGGAGTCCTTCACCAAGCAGATCGCTGGAAGGGTGGCTGGTGGGCGTAACCTGCCTCCTTCAGTAGTGGGCGTGGCAGCTAAGGCCCTGGAGCACAGCAGAGACATGCGTTACCAGTCCCTCAACGCCTACAGGAAACGCTTCAACATGAGGGCCTACTCCTCTTTCGAGGATCTCACAGgagagaaagagctgGCTGCAGAGCTGGAGAGTCTATATGGAGAAGTGGATGCTGTGGAGCTGTACCCAGGCCTTCTGGTGGAGCGCCCCAGACCTAACTCTGTCTTTGGGGAGACTATGATTGAAATGGGCTCCCCTTATTCCCTGAAAGGTCTCCTGGGAAACCCCATTTGCTCGCCGGAATACTGGATGCCCAGCACGTTCGGAGGGATTGTGGGCTTTGACATCGTCAACACTGCTTCATTGGAGAGGCTGGTGTGCAGCAATGTCAAAGGTCCTTGTCCTATGGTGTCTTTTCAAGTGCCAGATTTTTTTAGAGTGTTTGAGCAGGCATCAGCCAACGCAAGTGAGACACACCCGAGTGATGTGAACCCAGGTGTTCTGCTGAAAGAAAGGACTTCCGAGCTTTAAAGAACTAAAGCAATAGGTTTTATTCAAATACACTTAGCAGTGTCTAGTGTTCTAAAGTTGCTCTCATTTTAGGTCGTTTTGCTGTATTTAAGATTTTATTGTGATATTTGCAAGCAAAAAGGCTTTATTTTGCTGCAGCAATTATGACATTTAGCATGGCAATATGCAATTATTTTGTCCAATTTGTTGCAAAACTGCACTGACGAGAGAGAACATTTGTTGACATTTGGCTAAATTGAACCATATCATGCTGTAAATGTGTGTGATTATCTGAAATTGCCAGGCCTCTTTTTGTACTGCAGTGTTGGATAATTTGTATGCAATAATATTTAGATGATTTAACTGTTTTATGAGGAAATAGTGCAGTGATGGGACAAATGTATAAATATTATAATTTGGGATTGCGGAATCCTTGAGGGACTTATTTAGTTATTTATTGTTTATTAATTTATGTATTTAATATTTATTAGTGTATTGTTGATTATTTAGTTATGATTATGTTTTTAAATATGAAAACCGTTTACTCATTTGTAATGCTTAACATGAACAAAAGTAAGTTAGTTTTCTCTGTATACACTGTGAAACTTGAAGGAGTTACATGGGGctgttaagagcattgggccaataactgaaaggtcgctggttcaagtccccgagctggcaaggtggaAAATCATTCGTTTTTCTGCCCTTgagaaaggcagttaacccccaacaactacTCCCCGGGTGCCGATGATAGAAGTCAATTTAGGCAACTCTCTGATTCCAAGGGGTgtggttaaatgcggaagacatttcagttgaatgctttcagttgtgcaactgTCTAGGTATCTCCTTGCTTGAAGCAAAGACCTATCCGAAATACTTTTATGTTGTTTATTGTCTGTCTAGAACTTGTACTACCGCATGGAAAATCAGCTGGGGTGTATTTGTCAGTCCTTTTTTTGGGTCAAATATAATGTTATTGCAAATGGAGGAAGTGAATATTTGTGAGACTGTATTATTACAGAGTGAAATGAATGAATGCAAATTAATCACACTAATACAATTCTTGGTAAATTGATTGTCTTTTAATGCTTTCTTAAGTGCCATACCATTTTAATTGGAATGTAAATTGTGACTTTACTGTTataaaaggggcaatctgcagttcaaacaacaacaaagtggACACCCTGCCCcagtttttggtaaacagctgagggatggggctggagaagtATAACCAGTTTTAAATTCATAGATAAAGctatagatgcaaggactgaccatccatgagatcaaaatgatagttttaaccatgttttgaggctagaTACTGTTATTACATTGTTAACAAGCAATGCAACAAATTAAACATGCTTACAGATGAGGTTTGGTAATTGAACAAAGCTCATGAGGAAttaataagttatattcttcaagaatcaatgtgtacatatcattaataaaacatttaagaatGGACGTAGGAAtcacagatttcccctttaacatGGTTGCATATAAAAAATAATTTGCCCTTCTGCCTGTGAATAAAACAAGTTAAATTTGACATTGCATTTATTATAGTGCTTTATTTATTAAGAACCATTAGTCCTTCTGGGCTAATATTCTTGGGATTGTAGACACAAaactatacaata

Function

NR:

description
prostaglandin G/H synthase 2-like

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K11987 PTGS2, COX2; prostaglandin-endoperoxide synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589730.2 True 4270 mRNA 0.42 9 28893815 28901239

Neighbor

gene id symbol gene type direction distance location
LOC110508863 LOC106599199 coding downstream 31445 28860725 ~ 28862370 (-)
LOC110508860 LOC106599100 coding downstream 53090 28817604 ~ 28840725 (-)
dusp12 dusp12 coding downstream 133635 28757578 ~ 28760180 (-)
LOC110508857 LOC106599111 coding downstream 140132 28706088 ~ 28753683 (-)
LOC110508854 LOC106599121 coding downstream 253891 28632715 ~ 28639924 (-)
LOC110508212 LOC106599092 coding upstream 81860 28983099 ~ 29003237 (-)
LOC110508867 LOC106599198 coding upstream 124769 29026008 ~ 29028895 (-)
LOC110508868 LOC106599087 coding upstream 144327 29045566 ~ 29073745 (-)
LOC118944842 NA coding upstream 219145 29118684 ~ 29123806 (-)
LOC110508284 LOC106598767 coding upstream 236913 29138152 ~ 29141013 (-)
G2125725 NA non-coding downstream 5744 28887337 ~ 28888071 (-)
G2125708 NA non-coding downstream 28266 28865167 ~ 28865549 (-)
G2125699 NA non-coding downstream 42465 28851147 ~ 28851350 (-)
G2125698 NA non-coding downstream 42786 28850786 ~ 28851029 (-)
G2125696 NA non-coding downstream 48937 28844639 ~ 28844878 (-)
G2125667 NA non-coding upstream 179 28901418 ~ 28902037 (-)
G2125728 NA non-coding upstream 2962 28904201 ~ 28904458 (-)
G2125745 NA non-coding upstream 31420 28932659 ~ 28991064 (-)
G2125754 NA non-coding upstream 48101 28949340 ~ 28954746 (-)
G2125789 NA non-coding upstream 128438 29029677 ~ 29029969 (-)
G2125723 NA other downstream 7961 28885468 ~ 28885854 (-)
G2125290 NA other downstream 201345 28692139 ~ 28692470 (-)
G2125253 NA other downstream 208080 28627055 ~ 28685735 (-)
G2125270 agla other downstream 230389 28662708 ~ 28663426 (-)
G2125203 LOC106599130 other downstream 342301 28544941 ~ 28551514 (-)
G2125813 NA other upstream 176800 29078039 ~ 29078744 (-)
LOC110508917 LOC106598978 other upstream 1499974 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1533196 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1652350 30553589 ~ 30555187 (-)

Expression


Co-expression Network