LOC118944842


Basic Information

Item Value
gene id LOC118944842
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29118684 ~ 29123806 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040213.1
AGTCAGGTTCTTTCAGAGACCAATCATGAACACAGGCCTACAGCCAGGAAACAGGTTTCTTGTTCAACATTCAAACAATTTTACATTCAAAGAGCACTAGCCCAAAGCTAGTCCTGTGATTTGACCACCTTCAGCATATCATGAGACCTACTCCTATCGGCAACATGTATTAAAACACAATGAAAACAATACATTTCTGGACGTGTGGTCCTCGGCCTCCCAATGGGGCTGGGGCCAGGGCTAAAGCAGGGGCCAAGATAGTGGATGGAGAACACACGGACCCCCTGAGGACTTATGTGCCATCGCTGCCCTCCTGTTACCGCTGCTGGAGGCTCCCGGACGGATAACGCCAACCACTccgctttctccctccctctgtccctatctctctgtttctctctctctttctttcatcatCCTGGAATTAAAGTGTGACTATGTTAATAACCTGTCAGGTCAGTTAAAAAAGATTGCTACTGGTGACACTGAAACCCAGTACTACCTGTGTCAGACTATTTGAGATATATATGGTTAAATTCAAAAAGATTTGTAATATTGATTTTGCGCGTGACTTAAAAATGTCCTTTGGAGTGGAACTTGAGGCAGAAGATTTTTCTGACTCTGGGCAGCCGACAATGATTCTGTTCAAACGCAAACGTCGGAGAAACATAACGGAGCCTTTACATTTTAGCTCTGCAACTGAGATCTTCATAAGTACAGAGGGTGCAGATCAGACATTGAGTGTGAAAAACAACATCATAGACTCTTCTCAGCGTTCCATCATATCAGATTCTGATATTTTAGACAGACGCAAACGTAGGAATAGCTTAGATATTCCACCAGATTTTGTAACATGCACACTGGAAAATATTCAGTATGTATACTTTGAAGTTTTATGTTTTATGTATACTTTGAAGCTACATAGTCACACTTTAAACCACATATATCTATTAAAGCCTTCATGACACCATCATAATGCCTTCATAATGTCCTACACTACATACATAGAAGCTTCACATATCATTTGTAAGCAAATGTCATGCTGGAAAAAGGAGGTGTGCAGATGCGGAAGCAGAGATGTGCCGACAGAAGCGAACTTTCGATGCATAATTCTGTTTAAACGAACCTAACGGACGGCGCAGAAGCTGCAAAATTAGGCTTTAGAGAGGTGGAAGGTTGCTGATTCAATCCACGGACAGGGTATAAAAACAGAACTGTGGGAACTGTTGGTCTATGATTCCAGGTACTCCctcctgccgttgtgcccttgagcatggGACTTAAACCCCAAAACTGCTCTCCATCCAGGGGTGCTGCTCTGTAGCTTATCAACTTAGCTTATCAATGATTTGTGCAGCGCCTATGAAATGTGATGAAGCAGATAATGAGGCTAAACTACTAACAATATTCAGTTAAGTAATGTACATTTAGAAGGTTATAATAGGGTCATACTCACATTGCTCCTATAACTATATTTAGCATTTCATTATCTTATATTCTGGCTTAGCTTTTTAATGCAATAAAAACTGTGACAAACTA
>TU2430565
CAACATTCAAACAATTTTACATTCAAAGAGCACTAGCCCAAAGCTAGTCCTGTGATTTGACCACCTTCAGCATATCATGAGACCTACTCCTATCGGCAACATGTATTAAAACACAATGAAAACAATACATTTCTGGACGTGTGGTCCTCGGCCTCCCAATGGGGCTGGGGCCAGGGCTAAAGCAGGGGCCAAGATAGTGGATGGAGAACACACGGACCCCCTGAGGACTTATGTGCCATCGCTGCCCTCCTGTTACCGCTGCTGGAGGCTCCCGGACGGATAACGCCAACCACTccgctttctccctccctctgtccctatctctctgtttctctctctctttctttcatcatCCTGGAATTAAAGTGTGACTATGTTAATAACCTGTCAGGTCAGTTAAAAAAGATTGCTACTGGTGACACTGAAACCCAGTACTACCTGTGTCAGACTATTTGAGATATATATGGTTAAATTCAAAAAGATTTGTAATATTGATTTTGCGCGTGACTTAAAAATGTCCTTTGGAGTGGAACTTGAGGCAGAAGATTTTTCTGACTCTGGGCAGCCGACAATGATTCTGTTCAAACGCAAACGTCGGAGAAACATAACGGAGCCTTTACATTTTAGCTCTGCAACTGAGATCTTCATAAGTACAGAGGGTGCAGATCAGACATTGAGTGTGAAAAACAACATCATAGACTCTTCTCAGCGTTCCATCATATCAGATTCTGATATTTTAGACAGACGCAAACGTAGGAATAGCTTAGATATTCCACCAGATTTTGTAACATGCACACTGGAAAATATTCAGTATGTATACTTTGAAGTTTTATGTTTTATGTATACTTTGAAGCTACATAGTCACACTTTAAACCACATATATCTATTAAAGCCTTCATGACACCATCATAATGCCTTCATAATGTCCTACACTACATACATAGAAGCTTCACATATCATTTGTAAGCAAATGTCATGCTGGAAAAAGGAGGTGTGCAGATGCGGAAGCAGAGATGTGCCGACAGAAGCGAACTTTCGATGCATAATTCTGTTTAAACGAACCTAACGGACGGCGCAGAAGCTGCAAAATTAGGCTTTAGAGAGGTGGAAGGTTGCTGATTCAATCCACGGACAGGGTATAAAAACAGAACTGTGGGAACTGTTGGTCTATGATTCCAGGTACTCCctcctgccgttgtgcccttgagcatggGACTTAAACCCCAAAACTGCTCTCCATCCAGGGGTGCTGCTCTGTAGCTTATCAACTTAGCTTATCAATGATTTGTGCAGCGCCTATGAAATGTGATGAAGCAGATAATGAGGCTAAACTACTAACAATATTCAGTTAAGTAATGTACATTTAGAAGGTTATAATAGGGTCATACTCACATTGCTCCTATAACTATATTTAGCATTTCATTATCTTATATTCTGGCTTAGCTTTTTAATGCAATAAAAACTGTGACAAACTATTCAGTGATGCTTTATTTGTCCTAATGCAATCCTCATTTTAAACTATGTATTTCAACTATGGTCAAATTGTTCCCTCTTACCAAGTCAGAGCTTTGGAACAAAATGTCTTGCATCATCAGCCCAGCATTGTTAATGCTGTTTTTTTCATCCTCTTGAAAATGCACTCAGTAAATGTACTGGAAtggtcatgtcttaaagtaaggtTGCCACTAAGGAACAAAGTTCAATGGGATTAACACCTAAACCTTAATGGGTGACTGACTGGAAAAACCACTGTCACTGGAGGATGAGAATGAGAGATGAATACTGTAAATTAGACCAGTGTTAACAATCTGCCTGTTTAAAAACATTCCAGAACATGTAAACAGTTCCATGATACAAGCGTGCTAATCAGAGGACAAGAGAGCATCTCATTACAAACAAAACAGAACATAGTACTTATTAATGCAGTCAATGAACACTTGATATTTATCGGTGTCAATTCTCTATGTTAAACAGCTGTAAGTATCTGAGAAAATCATTTGCGGTGCTTTCTCTGGCAATTGTTCAAAAGATTCAGCAATTGTACAATGGCAATGATGCATTATTAccaactgggcacagatgtcctttcaatgtctagttttgatttacatttggttgagttgtcaactaacagtgaattcaacgtgaaatcaacaacaaatgtcaccatgtcattggatttagagtaaaagttgggtgaaaaaaaagaCGAAATGCACTGATGTTGATGACTTTTACAAATCCagtcagttttccacgttgattgaAAGTCATCACATGTCCCTGCATATTTATGTGGTAAAGTTCGACACTCAACACAAATACAGAAGTTAGACATGGGGATTTACAAGAAGTCACGTGATTTTCAGGAAATTTTAGGCAGAAAAGAGAAACTGATACGATGCCAAATAAATGGTAACTGGGACAGTTTTTACTTCACTGTGCTTGTTGAGACAAAGACTTTCACATGGTACCTACTTTTCCACTTAGGTATTATTTGACCCAGTTAGATTCCTCTCATTGTATTATTGGTTCATGTTGCATTTAGAATGAGAGCACACGATGACCCAAATGGGAGTAAACAAACCCCAAGCTCACTTTCCTAACCATTTGTATTTTGAGTAAATTATCTCTTCAAGGTGTTGTCTTTAATTAACTACACTGCACTCTgtttcctctcaaggtttcttctCTTGCCAGTGTTGCCCGGTTTTTGAGGAGTATCTAAACTTAATTTGTGTAAAAATACAACATCAGCATAAAGACAGAGAGTGTGCAAGAAAAGATAGATGGGACTTTGTGACTTAAGTAACAAACCGGTTATATTAGTCATCACATCTACTCATCCATCTCATGTCAGGTTTAGACTCAACTGTTTCTGGCTACTGACCAACTGATTATGTTGATTTATATTTGTGCACCATCACTGCCTGTGCTGTTGACCTTTTCCACTTTCACTGTAGAAAAAAACACATACAGGAAATacttgttagtgtgtgtgtggctcccgTCCACAGTACACTTTTCCAAGGAGGTGTGtggatgttagtgtgtgtgtggctcccgTCCGCAGTACACTTTTCCAAGGAGGTGTGtggatgttagtgtgtgtgtggcacccgTCCACAGTACACTTTTCCAAGGAGGTGTGtggatgttagtgtgtgtgtggctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040213.1 False 1539 mRNA 0.42 3 29120384 29123806
TU2430565 True 3175 TUCP 0.40 3 29118684 29123742

Neighbor

gene id symbol gene type direction distance location
LOC110508868 LOC106599087 coding downstream 46639 29045566 ~ 29073745 (-)
LOC110508867 LOC106599198 coding downstream 91489 29026008 ~ 29028895 (-)
LOC110508212 LOC106599092 coding downstream 117147 28983099 ~ 29003237 (-)
LOC110508862 LOC106599098 coding downstream 219145 28893815 ~ 28901239 (-)
LOC110508863 LOC106599199 coding downstream 258014 28860725 ~ 28862370 (-)
LOC110508284 LOC106598767 coding upstream 14346 29138152 ~ 29141013 (-)
LOC110508873 LOC106599192 coding upstream 70792 29194598 ~ 29199181 (-)
LOC110508876 NA coding upstream 76782 29200588 ~ 29203038 (-)
LOC110508874 LOC106599072 coding upstream 79758 29203564 ~ 29220510 (-)
LOC110508877 NA coding upstream 105036 29228842 ~ 29239200 (-)
G2125817 NA non-coding downstream 38838 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 40126 29079529 ~ 29080258 (-)
G2125814 NA non-coding downstream 41358 29078750 ~ 29079026 (-)
G2125812 NA non-coding downstream 42872 29077146 ~ 29077512 (-)
G2125811 NA non-coding downstream 43585 29076554 ~ 29076799 (-)
G2125860 NA non-coding upstream 31423 29155229 ~ 29159013 (-)
G2125875 NA non-coding upstream 52847 29176653 ~ 29274480 (-)
G2125903 NA non-coding upstream 88140 29211946 ~ 29212438 (-)
G2125888 NA non-coding upstream 174000 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 174713 29298519 ~ 29299176 (-)
G2125813 NA other downstream 41640 29078039 ~ 29078744 (-)
G2125723 NA other downstream 234530 28885468 ~ 28885854 (-)
G2125290 NA other downstream 427914 28692139 ~ 28692470 (-)
G2125253 NA other downstream 434649 28627055 ~ 28685735 (-)
G2125270 agla other downstream 456958 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1277407 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1310629 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1429783 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1581279 30705085 ~ 30706591 (-)
G2128216 NA other upstream 2120285 31244091 ~ 31244692 (-)

Expression


Co-expression Network