LOC110508284 (LOC106598767)


Basic Information

Item Value
gene id LOC110508284
gene name LOC106598767
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29138152 ~ 29141013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040227.1
ataaaaacaatttaaatcaattttagaataaggctgtaatgtaacaaaatgtggaaaaagtcaaggggtctgaatacttcatatATATGGTATATCTCTATGTGTAGGACCCTGTCATGAGGCACCTACACAGCCTCAGAGGGGTGTGTTGTGTACCTATTGAGGAGGTGGTGTTGGGTTCACTGACCAGGCCACAACGCAGCACACTAGGGGGCTCAATTGTTCAACTTCAAGCCACACCCAACCAGTGTCAAGATAGAAGGTGGACATCCTACCCATAATGCCCTCTGAGAGGAGTTGTAAAAGTCAGCAGTACTGGAGCTAGACAGCCCGTCGTGCCActttgtggacaacgactcccacTGCTAGGGCGGTGAGACATGTATCTTGGcagtatatccataatctttggtTTCCTAAAGGTTGGTAGGATGTTGCATCAAGGTGCTCACTGGTCATGGAGGCTCGTTTGAGACATTCATCCCTCCCTCTGGGGTTGTGTTTTGGACCCTTCCACTTTGAGGTGCTGCCAGCGTGGTGTGGTCGTTGTGACGCCTGAGCGTACAGGTCCTGCCTCCATCTCAGGTCCAGCCAGACACACCTGCTGGCCCAAGCCTCAGAATACCAAGAAGTGCCGTCGCGGAGGTggcactggaggaggaggaggtggtggagtggGAGGAGGTGGTTCACTGCCATCCCGTCTGGGCTTCAGGCAGAACACCACCACAGAGTTCCAACCAGATGCCATGTTGTCCCCCGGGAAGGGCCACAGGGGAGAGGGGACCCCCAGGgccgagaggagagaggggacttCCAGGTGTACCTGGAGTGACAGGGGATGTTGGACTCATGAGACCTCCTGGACTGGATGGAATGGCTGGAGCTACTGGACTGGAAGGAGATAAAGGTGAGAAAGGAGATCAAGGAAACATGGGTCTGCCTGGTGCTCCGGGGCAACTTGGGAGACAAGGATAGAAAGGTCTACTCCAGAAGCGAGAACGACAGCATCTTCACCGTCTTCCTGCTCTATGCCGAACCCAAGGCCTGACCTACGACTTCGTCTGTGAACCCGGCTTGACCTCTGCATGAGCTTTATCTGACAACTTATGCTGACTGGATCGCCTCCAAACTCTTTTCACTACTCTGATAAATCATCTCTTTCAATATAGCTACTGCTGCTAACTTTGTTCCTGCTTATTGCTATCAAAATAATCTGACCAAATGCTTGCTGTATTTTGATGGTAAAGGCTGTAACACTGtatccagtggttcccaaacagtGGAAAAacttttcagtgtaaacttaaatgactaaaaccaaatataatgtatgtataaaagataatggacctatatttttttcaataatagCCTATAATTTTTGAGAATTTACAATCAAGAAAATAGCGCTAGACAATCAGGCCCCCATTGATTTAGTTAAAATGCTTGAGCATAAGAACACCAGCCATGTCAACGTTTGGAAATTAGcttaaaaacagaaaacaaaataTCTCAGCTCCGTGGCAAAACGCATAGAATTGCAGGGAATTGACTTTAAAATTGCAAAATGTTCTTTCAGCTCCATGGCAGGATGTGTGGAATTGCAGGAGATTAGCTTTGAAACTGCTTCATTTTCTTATCTAGATGCCAAGATAATATTTGTTACTTATTCTTTGGTCTGTGtctgttttttcttttttaacAGCTCGACCCTTATGTTGGGTCACGACTCAAAAGACACCTCAATCGGTGGGtcagtttgggaacccctgctttATACAACGCTTACAGTTGCTATCAATGCAATAAAACACTGCTAATGCTTGAAGTTAAAATTGCTTGAATTCTGTGAGTTTAGGTCTGAACCTATCTAGACTTTACTACGACTGATTTTAGATTTGTCAACTGCCCAATCCCAGCTCTGCTTAGGGACAATCTCACCCATTACTACTTTAATGTGATCCTAAGAGTAAAAAGCTGTCATCATTGTTGTGCCATAGAAATATAGCTCCAAGGTCTGTGGGTGATGGTGAGTGATGTATGAATGCATTATTTTTTATAGCCTACTGATGTACTAGTCCACGGTCACCACCAAAATATATCTGAATGAAACGTGCATGTTATTTCCCCCACTAGAGGGCACTGGGACATCACAGTTTGAAGAGGAGGGCTGAATGAGGATTGTATTAATTCTACAGTCTCAtgtaaaattattttttaaatacactaAAATAATGTTGATATTCAAGCAAATGTAGAGggggaaaacacacacatgctataATTATTTATGTTACACCACCCACATACATTTAAATCAAAATAAAGCAGGTTTGTACTAGCACAATTCCCCCCTGGCGGTGACTGTCATGCTTCATCCCTGTGACCTGTGATGTTGCCTCCCACCA

Function

NR:

description
PREDICTED: collagen alpha-1(IV) chain-like

GO:

id name namespace
GO:0045299 otolith mineralization biological_process
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040227.1 True 2411 mRNA 0.44 3 29138152 29141013

Neighbor

gene id symbol gene type direction distance location
LOC118944842 NA coding downstream 14346 29118684 ~ 29123806 (-)
LOC110508868 LOC106599087 coding downstream 64407 29045566 ~ 29073745 (-)
LOC110508867 LOC106599198 coding downstream 109257 29026008 ~ 29028895 (-)
LOC110508212 LOC106599092 coding downstream 134915 28983099 ~ 29003237 (-)
LOC110508862 LOC106599098 coding downstream 236913 28893815 ~ 28901239 (-)
LOC110508873 LOC106599192 coding upstream 53585 29194598 ~ 29199181 (-)
LOC110508876 NA coding upstream 59575 29200588 ~ 29203038 (-)
LOC110508874 LOC106599072 coding upstream 62551 29203564 ~ 29220510 (-)
LOC110508877 NA coding upstream 87829 29228842 ~ 29239200 (-)
LOC110508879 LOC106599070 coding upstream 123816 29264829 ~ 29269523 (-)
G2125817 NA non-coding downstream 56606 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 57894 29079529 ~ 29080258 (-)
G2125814 NA non-coding downstream 59126 29078750 ~ 29079026 (-)
G2125812 NA non-coding downstream 60640 29077146 ~ 29077512 (-)
G2125811 NA non-coding downstream 61353 29076554 ~ 29076799 (-)
G2125860 NA non-coding upstream 14216 29155229 ~ 29159013 (-)
G2125875 NA non-coding upstream 35640 29176653 ~ 29274480 (-)
G2125903 NA non-coding upstream 70933 29211946 ~ 29212438 (-)
G2125888 NA non-coding upstream 156793 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 157506 29298519 ~ 29299176 (-)
G2125813 NA other downstream 59408 29078039 ~ 29078744 (-)
G2125723 NA other downstream 252298 28885468 ~ 28885854 (-)
G2125290 NA other downstream 445682 28692139 ~ 28692470 (-)
G2125253 NA other downstream 452417 28627055 ~ 28685735 (-)
LOC110508917 LOC106598978 other upstream 1260200 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1293422 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1412576 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1564072 30705085 ~ 30706591 (-)
G2128216 NA other upstream 2103078 31244091 ~ 31244692 (-)

Expression


Co-expression Network