LOC110508873 (LOC106599192)


Basic Information

Item Value
gene id LOC110508873
gene name LOC106599192
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29194598 ~ 29199181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589743.2
TTTAAGCAATTTAGTGAGTCTGCGAAGCCGCCAAACTACATTCAGATTGCAAGCTCACAAATGGAGTTTATGCAAAAATCTCCGTGGTGGGTCGCGACCCTGCTGTCAATTTCTTTCCTCTCTGATTGTTATCAGCCTTTTAATCCTCGTGGTTATAGTTATAAAGATGTCAGTCAGGCCCAATCCTTTAAACCGAGTGAAGAGCCAACCAGTCCTCCTAGGCCGAGAACAGTCCTCGTGAAGTGCCACGAAGATTCTCTTGAAGTCGTGGTGAAAGCTGACCTATTTGACATAGGCATTCTGGTGGACGGCAGCGATTTGCACCTAGGTTCCAATCAAATGGGTAGCAAGGGCGTTGAAGATTCTTGCAGTGCGGTTCCAACGGGGGAGGCAGAGTTTATCATCTTTGCCCAGTTGACCGCATGTGGAACCAAACTCGCATTTATGGAGACGGAGCTGGTTTATTCCAATATTCTCAGCTATTCACCTGCACCCTCTTCTGGTGTCGTCAGATTTGAATTGGCTGTGATTCCCATCGAATGCCATTACGGAAGGAGGTATGCTGTTGACAGTGCTGCCCTGGCTCCCACCTGGATCCCCTTTGCCTCAACAGTGACTGCTGAGGACCATCTGCAATTCAGCCTCCGCCTCATCACGGATGACTGGCGCTCTGAAAGGGGATCAAATGTCTACTTTCTGGGTGACACCATACACCTGGAGGCAGCTGTCACCATGGGCAACCACATGCCCTTCCGCGTGTATGTGGAGCATTGTGTGGCCACGGCAACTCCTGACGCAGACTCAAACCCTAGACACAACTTCATAGAGTACTATGGATGCCTCACTGACGCCCAGCTGACCGGCTCTAATTCACGGTACATGCCCAGGGTCCAGGATGACAAGCTGCATATCATGCTGGATGCCTTCAGATTCTACCAGAAGGATTCCAATTTGATCTTCATCACCTGCCATCTGAAAGCTGTCCCTGCCATGTTTTCTGTGAAATCAAGGAGTCGAGCGTGCTCCTTCATTGAGAACAGCTGGAGGTCAGCAGATGGGAACGACCAGGTCTGTATAAGTTGTGTAGTCTCCAAACGCTTTGCGGAGCCTACTGCCCCCATGACCAGAACCAACACCAAGACTACTACTCCCAAACCAAATTCATCCAGCTTCCGCATTCGCCCAGGCCAGCGCACAGAGCAGCTCCAAAAGGTTGAGCCCAGATCCAAAAAGCCTTACTCTGGTTCCTGGAAGAGGGGAACGGACACAACAGAAGAGTGGAGCAAGACTACCATCTTGGGGCCCCTGATTGTTGTCCCTACTAAGGAAGTTATCAGCTTGGCAACGGACTCCACGACACTCTGCTCAAAATTGACACCGGGTGAGACCTCAGACTCGGTGGCAGTCCATCCCAAAGAGCTGCAGGAGGCTACAACAGACATCTCTATGGGCACTGGTGGTACTTGCAAAAGTAAAGACAGGAAATGCACGCTTTCTGAATGAGGCACTGCTGTGAACAGTCTTTCCAGTCACACAAGATGGCACCTCACTGGATTGAAGGGTGCTGTGCAGGAAGTCGACTGTGGAACTTGAATGCAATTCACTCTGATGGCAATTGACCAACCTTTGGCTTAAACCACTAACCAAGTTCTTGGTCCTTTTTTAAAGAATTGTGAATTCAAGTTGTTTTGAATGTTGCTCATCTGCTGTTCCATTTCACATTACCATGGCCAATGCAAATAAAAACATTACATCCGTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589743.2 True 1759 mRNA 0.49 8 29194598 29199181

Neighbor

gene id symbol gene type direction distance location
LOC110508284 LOC106598767 coding downstream 53585 29138152 ~ 29141013 (-)
LOC118944842 NA coding downstream 70792 29118684 ~ 29123806 (-)
LOC110508868 LOC106599087 coding downstream 120853 29045566 ~ 29073745 (-)
LOC110508867 LOC106599198 coding downstream 165703 29026008 ~ 29028895 (-)
LOC110508212 LOC106599092 coding downstream 191361 28983099 ~ 29003237 (-)
LOC110508876 NA coding upstream 1407 29200588 ~ 29203038 (-)
LOC110508874 LOC106599072 coding upstream 4383 29203564 ~ 29220510 (-)
LOC110508877 NA coding upstream 29661 29228842 ~ 29239200 (-)
LOC110508879 LOC106599070 coding upstream 65648 29264829 ~ 29269523 (-)
LOC110508881 ap2m1 coding upstream 84735 29283916 ~ 29293425 (-)
G2125860 NA non-coding downstream 35585 29155229 ~ 29159013 (-)
G2125817 NA non-coding downstream 113052 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 114340 29079529 ~ 29080258 (-)
G2125814 NA non-coding downstream 115572 29078750 ~ 29079026 (-)
G2125812 NA non-coding downstream 117086 29077146 ~ 29077512 (-)
G2125903 NA non-coding upstream 12765 29211946 ~ 29212438 (-)
G2125888 NA non-coding upstream 98625 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 99338 29298519 ~ 29299176 (-)
G2125937 NA non-coding upstream 116973 29316154 ~ 29316379 (-)
LOC110508885 LOC106599059 non-coding upstream 130360 29320737 ~ 29330605 (-)
G2125813 NA other downstream 115854 29078039 ~ 29078744 (-)
G2125723 NA other downstream 308744 28885468 ~ 28885854 (-)
G2125290 NA other downstream 502128 28692139 ~ 28692470 (-)
G2125270 agla other downstream 531172 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1202032 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1235254 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1354408 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1505904 30705085 ~ 30706591 (-)
G2128216 NA other upstream 2044910 31244091 ~ 31244692 (-)

Expression


Co-expression Network