LOC110508874 (LOC106599072)


Basic Information

Item Value
gene id LOC110508874
gene name LOC106599072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29203564 ~ 29220510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589746.2
AGTGTGGTTCCTATTCCTACTTTGAAGCAAAGAGTCTAGGTTTCAACCAAATTCTCACATCTTGTTTAGTGAGAGCTTCTTGAATGAATGACGTATGGACTGTTATGATGACTGAAAAGTCTTGCTTACTGAAGGTGACTGAGAGTCTGTTTGACTCGTCATCACTGTGGCTGAGAGATTTCAATGGTTCCAATTATTATGTCATTTTATGGGtctggttgtttaatttacctttTTGTTATTGCTTGTGACGATATATGATGTTACCAAACGAAACCGCACAATGCCCAAGgCCTCAAAGCGGTGTGAATCTGCAGGTGTGTTTTGTGAATGACAGCAACAGTGACAAGGACAGCGATGCAgaggacagcaggacagagacCAGCCTGGACACGCCGCTGTCACCTGTGAGCAAGCAGAGTTCATCCCTGTCGGACCGGGACACGGGAGAGGAGGACTCAGACCCCCTGGAGGATTGTGGCTTCTGGCGGGTGCAGCGGCGGCTCCAAGAGGAGGCACGGGTGGCCCTGGCGTTGGCTCGCCCTATGGCCCGCAtgcaggtagaggtggagagacagatccagatccaCCGCCGCTCGCCTGTCGCCGACCTGCTGCCCCACCTGCCCCATATCAGCGAGGGTCTGATGAAGAGGAGTCTGAGGAGGGGAGACATGAGGGACATGAGCCTGGGCCAGCTTCAGGTCATCACCAACGATCTGCACTCGCAGATACAGAGCCTGAATGAGGAGCTGGTGCAGCTGCTGCTAATGAGAGATGAGCTCCATGTGGAGCAGGACGCCATGCTGGTGGACATAGAGGACCTGACCAGGCATGCTCAGAGCCTCCAGAGACACATGGCAGAGAAAACCCTCTCCAAATAAAACCCATAGTCACCTGTCCCCATCATCACCTATGTCACATGACAGCCAGAACCAACTCAGAGCAGTGGTcaacaaccctggtcctggagaccAATAAGGCATGCAGGGTTTTGTTCCAGGTCAGCACTTTCACACCTGATTTAACTGATTAATACCTTTAATGACTAGGCAAATGGTTGATTCAGGGTTGTTTTagtgctggaacaaaagcctggaTATGCTTTAACTCTCCAGAACGAGGGTTGTTGTCCACGGCTACAGAGGGACCAAACCCAACCGGGAGTCATACAAAGTCCTGAGTTTTAAGAGTTCAGGCAAAACTCCGGGCCCCAGTCATAAACCATGTGTGGTAGTGACAGTTTGATCACAGAAGATGACTAGGGTTCTGTTTGTTGCCCCGCTCAGCCAGTCGTGGTGCTTTGTAGAATACTAAACACACATAGCTGTTTGTGCTGTTGCTAAGAAATTAGCTCCTAGGCTTCCCAGTGTATAAACATTGTGGCAACTACACAGATCTTGTATGAATAATTTATACACACAAATGGATGTAGTACAGCTGTTGTTGCATAATTCCACCTGTTTAAACATTCTGATGTTTTGAAGCTTTACTGGTTGATCCTTGATTTTgccaaatgtttacagacagattgcaATGACCTTTTGTCTGCACTTTAAATTAAATGGAAGATAAGAGTCCTTTTGGTGTTTTTTGTGGCAGAGTTCAAATAATGGGGGTGCTTAACTAATATTGATACCCATATGTTCAAAATATTAACAGATTTTTAGGGCGCGACCAAAGGTCAGTGTGTAATTCGATCCCTGCTTTGTGACCCAAATGCTACTCCACAGAAAAAACAATTATTTTAAGACAAAATATTATTGACAAAGTCAAATCTCAATGGTTAAGAACTAAAGATGTCTGAGCTGACTGTTCTTGACACTGGTAAAGTGATAGCTGGTCGGTCTGGACTAAATAAAGAACCCGTTGCTGAGCAGGAAAGAGACTTGGATGCCTTGTGGCCTGGCTCAAGATGGCATCTTTGTTCAGTATGATTAGTCCATCTTCAGCAtttagagagtgtcattttccATCagctctttttatttatttattattctcTGTCGTATTATACTAAGGTCCTTCAACCGTATTATGCTGCATTCTGAAAACGTTTTGTGTACAGAGATTAAAATTATGGATAAACGTTTGAA
>XM_021589744.2
gCCTACGTCTTTCCAtcagaggagagtagtggagagcgCCTACGTCTTTCCAtcagaggagagtagtggagagcgCCTACGTCTTTCCATCAGCTGAGCAgaatctctcccctccctctatccatcccgctccctccccctctccctcttcttcctcctcccttctgcATGTAGCTGAGGCTTATGAGTGGGTCTCCTGGGTCTGGCTCACTGCAGTGTATGGAAGGGTAGGGCTGCTGCCTGTACAATGTGCTGAAGAATGGTGCACCAGGAGAAACGTGTTtaccagGCCCAGAGGAATGACAGAGAGTCCATCAGGCAGAAGCTAGCCTTTGGCAGTTTCTATGACGACGAGGAGCCAGCCATCTACACCAGCTGCAACAAGAATGGCATTTCCTCCCGgCCTCAAAGCGGTGTGAATCTGCAGGTGTGTTTTGTGAATGACAGCAACAGTGACAAGGACAGCGATGCAgaggacagcaggacagagacCAGCCTGGACACGCCGCTGTCACCTGTGAGCAAGCAGAGTTCATCCCTGTCGGACCGGGACACGGGAGAGGAGGACTCAGACCCCCTGGAGGATTGTGGCTTCTGGCGGGTGCAGCGGCGGCTCCAAGAGGAGGCACGGGTGGCCCTGGCGTTGGCTCGCCCTATGGCCCGCAtgcaggtagaggtggagagacagatccagatccaCCGCCGCTCGCCTGTCGCCGACCTGCTGCCCCACCTGCCCCATATCAGCGAGGGTCTGATGAAGAGGAGTCTGAGGAGGGGAGACATGAGGGACATGAGCCTGGGCCAGCTTCAGGTCATCACCAACGATCTGCACTCGCAGATACAGAGCCTGAATGAGGAGCTGGTGCAGCTGCTGCTAATGAGAGATGAGCTCCATGTGGAGCAGGACGCCATGCTGGTGGACATAGAGGACCTGACCAGGCATGCTCAGAGCCTCCAGAGACACATGGCAGAGAAAACCCTCTCCAAATAAAACCCATAGTCACCTGTCCCCATCATCACCTATGTCACATGACAGCCAGAACCAACTCAGAGCAGTGGTcaacaaccctggtcctggagaccAATAAGGCATGCAGGGTTTTGTTCCAGGTCAGCACTTTCACACCTGATTTAACTGATTAATACCTTTAATGACTAGGCAAATGGTTGATTCAGGGTTGTTTTagtgctggaacaaaagcctggaTATGCTTTAACTCTCCAGAACGAGGGTTGTTGTCCACGGCTACAGAGGGACCAAACCCAACCGGGAGTCATACAAAGTCCTGAGTTTTAAGAGTTCAGGCAAAACTCCGGGCCCCAGTCATAAACCATGTGTGGTAGTGACAGTTTGATCACAGAAGATGACTAGGGTTCTGTTTGTTGCCCCGCTCAGCCAGTCGTGGTGCTTTGTAGAATACTAAACACACATAGCTGTTTGTGCTGTTGCTAAGAAATTAGCTCCTAGGCTTCCCAGTGTATAAACATTGTGGCAACTACACAGATCTTGTATGAATAATTTATACACACAAATGGATGTAGTACAGCTGTTGTTGCATAATTCCACCTGTTTAAACATTCTGATGTTTTGAAGCTTTACTGGTTGATCCTTGATTTTgccaaatgtttacagacagattgcaATGACCTTTTGTCTGCACTTTAAATTAAATGGAAGATAAGAGTCCTTTTGGTGTTTTTTGTGGCAGAGTTCAAATAATGGGGGTGCTTAACTAATATTGATACCCATATGTTCAAAATATTAACAGATTTTTAGGGCGCGACCAAAGGTCAGTGTGTAATTCGATCCCTGCTTTGTGACCCAAATGCTACTCCACAGAAAAAACAATTATTTTAAGACAAAATATTATTGACAAAGTCAAATCTCAATGGTTAAGAACTAAAGATGTCTGAGCTGACTGTTCTTGACACTGGTAAAGTGATAGCTGGTCGGTCTGGACTAAATAAAGAACCCGTTGCTGAGCAGGAAAGAGACTTGGATGCCTTGTGGCCTGGCTCAAGATGGCATCTTTGTTCAGTATGATTAGTCCATCTTCAGCAtttagagagtgtcattttccATCagctctttttatttatttattattctcTGTCGTATTATACTAAGGTCCTTCAACCGTATTATGCTGCATTCTGAAAACGTTTTGTGTACAGAGATTAAAATTATGGATAAACGTTTGAA

Function

NR:

description
schwannomin-interacting protein 1-like isoform X1

GO: NA

KEGG:

id description
K24832 IQCJ; IQ domain-containing protein J

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589746.2 False 2096 mRNA 0.46 6 29203564 29213045
XM_021589744.2 True 2206 mRNA 0.48 7 29203564 29220510

Neighbor

gene id symbol gene type direction distance location
LOC110508876 NA coding downstream 526 29200588 ~ 29203038 (-)
LOC110508873 LOC106599192 coding downstream 4383 29194598 ~ 29199181 (-)
LOC110508284 LOC106598767 coding downstream 62551 29138152 ~ 29141013 (-)
LOC118944842 NA coding downstream 79758 29118684 ~ 29123806 (-)
LOC110508868 LOC106599087 coding downstream 129819 29045566 ~ 29073745 (-)
LOC110508877 NA coding upstream 8332 29228842 ~ 29239200 (-)
LOC110508879 LOC106599070 coding upstream 44319 29264829 ~ 29269523 (-)
LOC110508881 ap2m1 coding upstream 63406 29283916 ~ 29293425 (-)
LOC110508883 LOC106599063 coding upstream 80140 29300650 ~ 29315173 (-)
LOC110508885 LOC106599059 coding upstream 100227 29320737 ~ 29330605 (-)
G2125860 NA non-coding downstream 44551 29155229 ~ 29159013 (-)
G2125817 NA non-coding downstream 122018 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 123306 29079529 ~ 29080258 (-)
G2125814 NA non-coding downstream 124538 29078750 ~ 29079026 (-)
G2125812 NA non-coding downstream 126052 29077146 ~ 29077512 (-)
G2125888 NA non-coding upstream 77296 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 78009 29298519 ~ 29299176 (-)
G2125937 NA non-coding upstream 95644 29316154 ~ 29316379 (-)
G2125943 NA non-coding upstream 129511 29350021 ~ 29350402 (-)
G2125813 NA other downstream 124820 29078039 ~ 29078744 (-)
G2125723 NA other downstream 317710 28885468 ~ 28885854 (-)
G2125290 NA other downstream 511094 28692139 ~ 28692470 (-)
G2125270 agla other downstream 540138 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1180703 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1213925 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1333079 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1484575 30705085 ~ 30706591 (-)
G2128216 NA other upstream 2023581 31244091 ~ 31244692 (-)

Expression


Co-expression Network