LOC110508877


Basic Information

Item Value
gene id LOC110508877
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29228842 ~ 29239200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966624.1
AACTTAAACAGAGACAAGGGTGCTCAACCAATGAATACAGTGCATTATATTAACCAAGCTAATCCTGAAGAGAATGCTGCCCTGGGAGTTCAAGATGGAGGGAGTTTGATTGATCAAGGAGGTGAAACCACTTCTGTCGATCTGTCCTCTGAGAGAGAAGATCTTACAAATGCACCCGATGCTGAAGGTGAAAACGATGAAGCCTATGGAAGTCGTGGAAGCTCTGATTCAGACCTGTCACAGATTCAACGAACCTTATTGGAATTCAACACAGACCCAGCTGACAACTAGTACAGGGTCTTAAGTAGGTACTTTGAAACACTCTTATCCGATTGTCAATTTCCAAGTGTTTTACGTGCCAACTGAAGATAACCCAGAGTTTATAATTATGCATTACCTCTGCCTGGGATCAAGTTACCAGAGGTAACTGACTACAAGAGGAGACGCTCAACGCTAACATGGACTGACACAATACAGTAAAGAATACTGAGGAAATAAAGGGCTTGTTAGAGACATTTCCATGTGTCCTGATCGTTGTCTGGCTGTTATCACAGAGCTCATTACTAAGATGGTGATAGATATGTTATGGTGATAGATATTTTACTATGTATTTGTAATGTTTCTGTAAAGACGGCTAGTTacgtcctgtgtggctcagttggtagagcatgacacttgcaacgccagggttgtgggtgataTTCCCACGGGGGAGCATTATGAAGTATGAAAATATATGCACTTTCTTCTGTAAGCCGCTCTTGTCTTGTAAATGTACTCGGAATTACAAGTCATGCTGTAATTGTCCCAAACTTCTTCAACTTGGGGACAGCTCAGGGATCAAGTATCAAAAATAGAAGTTACAATTTTCTACTTTTTCATGTAATGTATTGTTAAGATATTTTATCAAAGTTTAAGATAAATTATTAAATAATTCTACCCAGAAACGTAACCATTAGGATTAGAGGTTATGTAGCATGGACAATAATTGGAAATGATAACCATTGTGGAAGaaggaatgtatgtgtgtgtcgaaAGTAAGCAAAGAGGTTAATGAACCTATGTTTGAACCGACCCAGCTATAACTCTGTGGACATAAAATAAGACAGCGAGAGCTCCTCTGGGTTTTCCGTATCtggggggggggactggaactgtcagctaagtggtaaTAAACTGTGGTGAGACTTTAGGAAATAATCCAGATATAGTGTGTGCGTTAGTGGGTTGGAATGGACTTTTGAAGCTGCTTTGTCGGAGAAGAGGAGGGACATCTAAAAACTATGATGAAATGTGAGGTATATTAAGCAATGTACATGGCATTATGACCAGCGCTCTCGAGAATAAATGCTTTTGGCTAATTTCGgttga
>XM_021589751.2
tAGGAGGGGAATTGACTGCAATGCAAAAAAATATTCTATCCGCGAGGGTGGTTTGATCGTAAGAATCTAACCCTGCCATCATTAGCCCACAAAAATATGTTCCGATACTTATGTATATTCATGCTTTTCTCGTTAATTTCCCAATCTGATGTAAAGTTAGGCTCTGAAGAGGAACATATACTTGAGTACATGTACACCTTCTTTAATTCCTCCCACTATGAAGTTGTTGGTTTGTTGGATGGGGAACCAGTGGATTTCTACAGTAGTGTTCTCAAGTCCCCTGTACCTAAAAAGATCTGGAATGAAAAGGAGAGAAGCTTTGGGAATCAGTACTGGCAAGACCATATTACAAGTCGACAGAAGATTGATAAGTGGTTTTTATCCAGTGCTGAAGACCTGAAAATGCACATGACAAAAAATCAAAGCGGTGATGTTGTGCAGATGAGGTTTGGCTGTAAGAACATCCCTGAACGCAACCCTGTTCACGATGAGGAAACCCTGTTTGCTGAGTTTGCCTATGATGGAGAAACAACAATGAACTTCATTCATAACACAAATAAATGGACTCCAGTAGATTTTGCTGCTCAGTTAATTATAAACAATTGGAACAGAAAAAGGAGCATCAAATATCAAATAACCAACTTTCTGAATGTGGAATGTTATCAGGCACTCTATAATTTTCAGAAATTTGAACTCAATGCAACTCAGTACAATAACTCATCTGATCCACTTATCTACACTGTCCCTCGTGGCTCTCTAAAACCTGGGCACAACAACCTGACGTGTCTAGTAACCGGAACCTATCCCAGCTCCTCACCCATCGAGATGAATCTGTTTAGGAATAATGTAAACCTAACAGAGATGGAGGGTGTCCGGTCATCAGGGGTCAGACCTAACGAAGACAATACCTACCAGCTGAGAAAGACAGTGATGATTAATGCCTCCGAGTCTGAAGTGTATCAATGTGTGGTCAATCATAAAAGCTTTCCCGGAACACGGAAAAACACTTGGGAGGTGAAAAAAAGTGAAGAGTCAAGTGGAGGGATCAAATCCAGCTTCTATTGGACTATTGGACTACCGTTTTTTCTACTGGCTGTTTtagtggttgtggttgttgtatGGTTTTTCAAATACAAATGGAGATCTGAGCCTAATAGACATTTGGCTGCTAATCCTGAAGAGAATGCTGCCCTGGGAGTTCAAGATGGAGGGAGTTTGATTGATCAAGGAGGTGAAACCACTTCTGTCGATCTGTCCTCTGAGAGAGAAGATCTTACAAATGCACCCGATGCTGAAGGTGAAAACGATGAAGCCTATGGAAGTCGTGGAAGCTCTGATTCAGACCTGTCACAGATTCAACGAACCTTATTGGAATTCAACACAGACCCAGCTGACAACTAGTACAGGGTCTTAAGTAGGTACTTTGAAACACTCTTATCCGATTGTCAATTTCCAAGTGTTTTACGTGCCAACTGAAGATAACCCAGAGTTTATAATTATGCATTACCTCTGCCTGGGATCAAGTTACCAGAGGTAACTGACTACAAGAGGAGACGCTCAACGCTAACATGGACTGACACAATACAGTAAAGAATACTGAGGAAATAAAGGGCTTGTTAGAGACATTTCCATGTGTCCTGATCGTTGTCTGGCTGTTATCACAGAGCTCATTACTAAGATGGTGATAGATATGTTATGGTGATAGATATTTTACTATGTATTTGTAATGTTTCTGTAAAGACGGCTAGTTacgtcctgtgtggctcagttggtagagcatgacacttgcaacgccagggttgtgggtgataTTCCCACGGGGGAGCATTATGAAGTATGAAAATATATGCACTTTCTTCTGTAAGCCGCTCTTGTCTTGTAAATGTACTCGGAATTACAAGTCATGCTGTAATTGTCCCAAACTTCTTCAACTTGGGGACAGCTCAGGGATCAAGTATCAAAAATAGAAGTTACAATTTTCTACTTTTTCATGTAATGTATTGTTAAGATATTTTATCAAAGTTTAAGATAAATTATTAAATAATTCTACCCAGAAACGTAACCATTAGGATTAGAGGTTATGTAGCATGGACAATAATTGGAAATGATAACCATTGTGGAAGaaggaatgtatgtgtgtgtcgaaAGTAAGCAAAGAGGTTAATGAACCTATGTTTGAACCGACCCAGCTATAACTCTGTGGACATAAAATAAGACAGCGAGAGCTCCTCTGGGTTTTCCGTATCtggggggggggactggaactgtcagctaagtggtaaTAAACTGTGGTGAGACTTTAGGAAATAATCCAGATATAGTGTGTGCGTTAGTGGGTTGGAATGGACTTTTGAAGCTGCTTTGTCGGAGAAGAGGAGGGACATCTAAAAACTATGATGAAATGTGAGGTATATTAAGCAATGTACATGGCATTATGACCAGCGCTCTCGAGAATAAATGCTTTTGGCTAATTTCGgttga
>XM_021589754.2
tAGGAGGGGAATTGACTGCAATGCAAAAAAATATTCTATCCGCGAGGGTGGTTTGATCGTAAGAATCTAACCCTGCCATCATTAGCCCACAAAAATATGTTCCGATACTTATGTATATTCATGCTTTTCTCGTTAATTTCCCAATCTGATGTAAAGTTAGGCTCTGAAGAGGAACATATACTTGAGTACATGTACACCTTCTTTAATTCCTCCCACTATGAAGTTGTTGGTTTGTTGGATGGGGAACCAGTGGATTTCTACAGTAGTGTTCTCAAGTCCCCTGTACCTAAAAAGATCTGGAATGAAAAGGAGAGAAGCTTTGGGAATCAGTACTGGCAAGACCATATTACAAGTCGACAGAAGATTGATAAGTGGTTTTTATCCAGTGCTGAAGACCTGAAAATGCACATGACAAAAAATCAAAGCGGTGATGTTGTGCAGATGAGGTTTGGCTGTAAGAACATCCCTGAACGCAACCCTGTTCACGATGAGGAAACCCTGTTTGCTGAGTTTGCCTATGATGGAGAAACAACAATGAACTTCATTCATAACACAAATAAATGGACTCCAGTAGATTTTGCTGCTCAGTTAATTATAAACAATTGGAACAGAAAAAGGAGCATCAAATATCAAATAACCAACTTTCTGAATGTGGAATGTTATCAGGCACTCTATAATTTTCAGAAATTTGAACTCAATGCAACTCAGTACAATAACTCATCTGATCCACTTATCTACACTGTCCCTCGTGGCTCTCTAAAACCTGGGCACAACAACCTGACGTGTCTAGTAACCGGAACCTATCCCAGCTCCTCACCCATCGAGATGAATCTGTTTAGGAATAATGTAAACCTAACAGAGATGGAGGGTGTCCGGTCATCAGGGGTCAGACCTAACGAAGACAATACCTACCAGCTGAGAAAGACAGTGATGATTAATGCCTCCGAGTCTGAAGTGTATCAATGTGTGGTCAATCATAAAAGCTTTCCCGGAACACGGAAAAACACTTGGGAGGTGAAAAAAAGTGAAGAGTCAAGTGGAGGGATCAAATCCAGCTTCTATTGGACTATTGGACTACCGTTTTTTCTACTGGCTGTTTtagtggttgtggttgttgtatGGTTTTTCAAATACAAATGGAGATCTGAGCCTAATAGACATTTGGCTGCTAATCCTGAAGAGAATGCTGCCCTGGGAGTTCAAGATGGAGGGAGTTTGATTGATCAAGGAGGTGAAACCACTTCTGATGAAGCCTATGGAAGTCGTGGAAGCTCTGATTCAGACCTGTCACAGATTCAACGAACCTTATTGGAATTCAACACAGACCCAGCTGACAACTAGTACAGGGTCTTAAGTAGGTACTTTGAAACACTCTTATCCGATTGTCAATTTCCAAGTGTTTTACGTGCCAACTGAAGATAACCCAGAGTTTATAATTATGCATTACCTCTGCCTGGGATCAAGTTACCAGAGGTAACTGACTACAAGAGGAGACGCTCAACGCTAACATGGACTGACACAATACAGTAAAGAATACTGAGGAAATAAAGGGCTTGTTAGAGACATTTCCATGTGTCCTGATCGTTGTCTGGCTGTTATCACAGAGCTCATTACTAAGATGGTGATAGATATGTTATGGTGATAGATATTTTACTATGTATTTGTAATGTTTCTGTAAAGACGGCTAGTTacgtcctgtgtggctcagttggtagagcatgacacttgcaacgccagggttgtgggtgataTTCCCACGGGGGAGCATTATGAAGTATGAAAATATATGCACTTTCTTCTGTAAGCCGCTCTTGTCTTGTAAATGTACTCGGAATTACAAGTCATGCTGTAATTGTCCCAAACTTCTTCAACTTGGGGACAGCTCAGGGATCAAGTATCAAAAATAGAAGTTACAATTTTCTACTTTTTCATGTAATGTATTGTTAAGATATTTTATCAAAGTTTAAGATAAATTATTAAATAATTCTACCCAGAAACGTAACCATTAGGATTAGAGGTTATGTAGCATGGACAATAATTGGAAATGATAACCATTGTGGAAGaaggaatgtatgtgtgtgtcgaaAGTAAGCAAAGAGGTTAATGAACCTATGTTTGAACCGACCCAGCTATAACTCTGTGGACATAAAATAAGACAGCGAGAGCTCCTCTGGGTTTTCCGTATCtggggggggggactggaactgtcagctaagtggtaaTAAACTGTGGTGAGACTTTAGGAAATAATCCAGATATAGTGTGTGCGTTAGTGGGTTGGAATGGACTTTTGAAGCTGCTTTGTCGGAGAAGAGGAGGGACATCTAAAAACTATGATGAAATGTGAGGTATATTAAGCAATGTACATGGCATTATGACCAGCGCTCTCGAGAATAAATGCTTTTGGCTAATTTCGgttga

Function

NR:

description
zinc-alpha-2-glycoprotein-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966624.1 False 1371 mRNA 0.40 6 29228842 29232607
XM_021589751.2 False 2481 mRNA 0.41 10 29228842 29239200
XM_021589754.2 True 2421 mRNA 0.40 9 29228842 29239200

Neighbor

gene id symbol gene type direction distance location
LOC110508874 LOC106599072 coding downstream 8332 29203564 ~ 29220510 (-)
LOC110508876 NA coding downstream 25804 29200588 ~ 29203038 (-)
LOC110508873 LOC106599192 coding downstream 29661 29194598 ~ 29199181 (-)
LOC110508284 LOC106598767 coding downstream 87829 29138152 ~ 29141013 (-)
LOC118944842 NA coding downstream 105036 29118684 ~ 29123806 (-)
LOC110508879 LOC106599070 coding upstream 25629 29264829 ~ 29269523 (-)
LOC110508881 ap2m1 coding upstream 44716 29283916 ~ 29293425 (-)
LOC110508883 LOC106599063 coding upstream 61450 29300650 ~ 29315173 (-)
LOC110508885 LOC106599059 coding upstream 81537 29320737 ~ 29330605 (-)
copb2 LOC106599054 coding upstream 91901 29331101 ~ 29346369 (-)
G2125903 NA non-coding downstream 16404 29211946 ~ 29212438 (-)
G2125860 NA non-coding downstream 69829 29155229 ~ 29159013 (-)
G2125817 NA non-coding downstream 147296 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 148584 29079529 ~ 29080258 (-)
G2125814 NA non-coding downstream 149816 29078750 ~ 29079026 (-)
G2125888 NA non-coding upstream 58606 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 59319 29298519 ~ 29299176 (-)
G2125937 NA non-coding upstream 76954 29316154 ~ 29316379 (-)
G2125943 NA non-coding upstream 110821 29350021 ~ 29350402 (-)
G2125813 NA other downstream 150098 29078039 ~ 29078744 (-)
G2125723 NA other downstream 342988 28885468 ~ 28885854 (-)
G2125290 NA other downstream 536372 28692139 ~ 28692470 (-)
G2125270 agla other downstream 565416 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1162013 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1195235 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1314389 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1465885 30705085 ~ 30706591 (-)
G2128216 NA other upstream 2004891 31244091 ~ 31244692 (-)

Expression


Co-expression Network