LOC110508879 (LOC106599070)


Basic Information

Item Value
gene id LOC110508879
gene name LOC106599070
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29264829 ~ 29269523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589758.2
gttgcaGTTATATTACGTGCCGCGCGTTCAATCAGTTAGCAAGTCGGAAATGTAAGTATTTCCGAATTCCGTCTAGAACGTGAACCTGGCAATAGTTTCACAGAGCAGAGTGGGGGACGGGAGCACCGGACTGATGCAGTAGTGAAGAAATCGTAGCAGAATGGCGGAGAGGTGGCTACCTTTTTCGATCATATTTCTAGGAGTTCTCTCCTTGTATTGTGCTGCGTCGGCTGATAACAGCGGCATTAAGAAGATGAAGATGCAATTTGCAACAGGGCCACTTCTTAAATTCCAAATCTGcATCTCCTGAGGGTACAAGAGGGTGTTTGAGGAGTACATGCAGGTCTTGTACCAGCGGTACCCAGACATCCGCATTGAGGGAGAGAACTAccttcctctacccctctaccgACATGTTGCTTCCTTCCTGTCCATGTTCAAGCTGGCACTGATCGGACTGATCATCATCGGCAAGGACCCTTTTGCCCTCTGCGGTATGCAAGCCCCAGGCATCTGGGTCTGGGGACAGGAGAATAAGATTTATGCCTGcatgatggtgttcttcttcagCAACATGATTGAAAACCAGTGTATGTCAACAGGAGCGTTTGAAATCACGTTAAACGATGTGCCAGTGTGGTCCAAGCTGGAGTCAGGTCACCTGCCCTCCATGCAGCAGCTGGTCCAGATCCTGGAGAACGAGATGAAGATGAATGTACCCATGGACACACTCCCCCACCACCGCTCCTAACCCTGTCTCATCCCCCTGGATGGAGCCATAGACCCCTCCACGTTTGAGGTGGGTTTCTCAATGGACTGTGAGGTGATGTTAATGAAGGTCTGCGCTGAAGGCAGGAAGACTGCTAGCTCAGACTGGATGTCCCCATTGCTCCTCACCACGCCCCTTAGACGCCCTGCCCCTGATGCTGGCTTGGGATCTATGGCAACCGCAACAGCCATTTTCTTGTACTATTACTACTGCAGATCATTCATCTTGTTGCAATAAACATTCAGTTTTGTCTCTTATGCTCACATGGATCAATTTAAGCGCAACAATATTGATGTGAATGGTCAGATATTAGAGATTAATAtagattctccccccccccccccccccccccccacccttccaGATCACAGGTCTTTAATTAGCCACACATCGATCCATGTGAGTTAGGCATGACTATAGGTGGCGTGTCCATAAGGCCAAAATGATATAGCCTAATTAGCCTTTtcctgtctatacagaaataaataaaatcatttaaAATGGGCTACTAAAGTATGATTTGCCCACAGCGGGTCATAAGCATTGCCTGCAGTCGGAAGGAAAGGCAGCACACGGCATACACCAAATGCATGATTGTTTTGTTGTGACTGTCATTGAAAAGCAAAGGCTCAGCCAGGCATTTCACAATGTTTCAAAATACAATCGAAGAAAACCTAGTTTGAGAAGTAAACCTTTATTGCTGTCAGGAGAAAACAATGAAAA

Function

NR:

description
selenoprotein T1a-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG:

id description
K22366 SELENOT; thioredoxin reductase-like selenoprotein T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589758.2 True 1492 mRNA 0.47 6 29264829 29269523

Neighbor

gene id symbol gene type direction distance location
LOC110508877 NA coding downstream 25629 29228842 ~ 29239200 (-)
LOC110508874 LOC106599072 coding downstream 44319 29203564 ~ 29220510 (-)
LOC110508876 NA coding downstream 61791 29200588 ~ 29203038 (-)
LOC110508873 LOC106599192 coding downstream 65648 29194598 ~ 29199181 (-)
LOC110508284 LOC106598767 coding downstream 123816 29138152 ~ 29141013 (-)
LOC110508881 ap2m1 coding upstream 14393 29283916 ~ 29293425 (-)
LOC110508883 LOC106599063 coding upstream 31127 29300650 ~ 29315173 (-)
LOC110508885 LOC106599059 coding upstream 51214 29320737 ~ 29330605 (-)
copb2 LOC106599054 coding upstream 61578 29331101 ~ 29346369 (-)
LOC110508887 LOC106599048 coding upstream 86128 29355651 ~ 29360875 (-)
G2125903 NA non-coding downstream 52391 29211946 ~ 29212438 (-)
G2125860 NA non-coding downstream 105816 29155229 ~ 29159013 (-)
G2125817 NA non-coding downstream 183283 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 184571 29079529 ~ 29080258 (-)
G2125814 NA non-coding downstream 185803 29078750 ~ 29079026 (-)
G2125888 NA non-coding upstream 28283 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 28996 29298519 ~ 29299176 (-)
G2125937 NA non-coding upstream 46631 29316154 ~ 29316379 (-)
G2125943 NA non-coding upstream 80498 29350021 ~ 29350402 (-)
LOC118944842 NA other downstream 141087 29118684 ~ 29123806 (-)
G2125813 NA other downstream 186085 29078039 ~ 29078744 (-)
G2125723 NA other downstream 378975 28885468 ~ 28885854 (-)
G2125290 NA other downstream 572359 28692139 ~ 28692470 (-)
G2125270 agla other downstream 601403 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1131690 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1164912 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1284066 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1435562 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1974568 31244091 ~ 31244692 (-)

Expression


Co-expression Network