LOC110508881 (ap2m1)


Basic Information

Item Value
gene id LOC110508881
gene name ap2m1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29283916 ~ 29293425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589764.2
TTTAATGTAACTGGGTCGTGactggcctcacactccagtacagttgGTGGCGGTGTACTCACCAAGAAGAAGACGACGCTGGTCAACTGACTTCTAAAGAGGAGGGGAAAGCAGTAGGAGCATAATTAGCGAGTGTGTGTTGTAGAACTTTTGCTAACGAACCCTGAAATATATCGGAGTAAAAAGGGACGTGGACTTAGGTGTGTGAGAAGACTGAGGTGGGTGTTGTTTTCACCATGGCCAGTTTGGACTAAGGAGCAGCCACGATGATTGGAGGACTGTTTATCTACAACCACAAAGGGGAGGTCCTTATCTCTCGTGTCTACCGCGATGACATAGGGCGCAACGCGGTGGACGCGTTCCGTGTGAATGTGATCCATGCCCGGCAGCAGGTGCGCTCTCCTGTGACCAACATTGCACGTACCAGCTTCTTCCATGTCAAGCGCTCCAACATCTGGCTGGCGGCGGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGGCCGCCTACTTTGGCAAGGTCAGCGAAGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTCGACGAGATCCTGGACTTCGGGTATCCCCAGAACTCTGAGACCGGAGCACTAAAGACCTTCATCACCCAGCAGGGCATCAAGGGCCAGCATCAGACAAAGGAAGAGCAGTCTCAGATCACTAGTCAGGTGACTGGGCAGATTGGTTGGCGTCGCGAAGGCATCAAGTATCGACGCAATGAGCTCTTCTTAGATGTGCTGGAGAGTGTCAACCTGCTTATGTCACCTCAAGGTCAGGTCCTGAGTGCCCACGTGTCCGGCCGTGTGGTAATGAAGAGCTATCTCAGTGGAATGCCGGAGTGCAAATTTGGCATGAATGACAAAATTGTCATTGATAAGGCGGGTAAAGGCGGTGTCACTGATGAGGTGGGAAAGAGTACCAGTGGTAAGCAGTCCATAGCCATCGACGACTGTACGTTCAACCAGTGTGTGCGTCTCAGTAAGTTTGACTCGGAGCGCAGCATCAGCTTCATCCCCCCGGATGGAGAGTATGAGCTCATGAGGTACCGTACCACTAAAGACATCATCCTACCTTTCCGAGTCATTCCACTGGTCAGGGAGGTGGGCCGCACCAAACTGGAGGTCAAAGTGGTCATCAAGTCCAACTTCAAACCCTCGCTCCTGGCTCAGAAAATTGAGGTGCGCATTCCCACACCGCTCAACACAAGCGGTGTCCAGGTGATCTGCATGAAAGGCAAGGCCAAGTACAAGGCCAGCGAGAACGCCATCGTATGGAAGATCAAGCGCATGGCTGGGATGAAGGAATCTCAGATCAGTGCTGAAATCGAGCTGCTGCCCACCAACGATAAGAAGAAGTGGGCCCGTCCTCCCATCTCCATGAACTTTGAGGTTCCATTTGCCCCCTCTGGGCTGAAGGTGCGTTACTTGAAGGTGTTTGAGTCCAAGCTGAACTACAGTGATCATGATGTTGTCAAATGGGTGCGCTACATTGGCCGAAGCGGCATCTACGAGACTCGATGTTAGAGCGCGAGCTGAGGCATACCTAACATACTCCCTCCACACTTTACATATTTTCTtatgtccctctctcttcactccatctctcttccctttaTTCTGCAATGTTAGGGATGAATTTAAATAACGTACAGATACTGTATATGCAAAATGTGAACCATAGTATGGCATCTCTTACTAtggttaaaggtagactcagcgatatgatgtagaaagtaaacagcatagtgggtcgtTTTCTGCAgcaactaagagcgttgaagctCAACTTCTCTACTATTTTGGTGCCCTGAACTGAGAGCTAAGTGTTGCATCttgctcatttcaatagccagtGCTGCTCATGGCAACATCATTTCGATGAGTCTACCTTCAACTTGCAAACAAGCTGCCCCTGTATAGAAGGAATACAAATAACGTGAAAACTGGTGGGGTTGAAGGGTCCATAATGTGGAGGAAAGTCCAGGTTAAGTGTTACTGTCCAGTCTGCAGTTTTTATTATAGGGTCAAGGTCTTTGAAGCGTCCACTTGTTATCCACCGTTTTTCTAAATGGCCTTTTGAGTCCAACATCCTCTCTTACCTGTGACATGCATCTAGTGAGCTTATTGATAATTGGCTGTTTGTAAATGGTAGTTTGTTTCTTTGGGTGGAATACAACCTGAGCACTACAGTGGCTTGGCGCTGACCTGCCTTTTCAGAGCCCGTGATGAGGTCGCCCCACCCCCCGGTGGTCACATTGCCTTGTTTGTAAAACCTGGTGACTGTCCAGTAAAATCCCATCATGTAACCAGC
>XM_021589762.2
GTTTAATGTAACTGGGTCGTGactggcctcacactccagtacagttgGTGGCGGTGTACTCACCAAGAAGAAGACGACGCTGGTCAACTGACTTCTAAAGAGGAGGGGAAAGCAGTAGGAGCATAATTAGCGAGTGTGTGTTGTAGAACTTTTGCTAACGAACCCTGAAATATATCGGAGTAAAAAGGGACGTGGACTTAGGTGTGTGAGAAGACTGAGGTGGGTGTTGTTTTCACCATGGCCAGTTTGGACTAAGGAGCAGCCACGATGATTGGAGGACTGTTTATCTACAACCACAAAGGGGAGGTCCTTATCTCTCGTGTCTACCGCGATGACATAGGGCGCAACGCGGTGGACGCGTTCCGTGTGAATGTGATCCATGCCCGGCAGCAGGTGCGCTCTCCTGTGACCAACATTGCACGTACCAGCTTCTTCCATGTCAAGCGCTCCAACATCTGGCTGGCGGCGGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGGCCGCCTACTTTGGCAAGGTCAGCGAAGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTCGACGAGATCCTGGACTTCGGGTATCCCCAGAACTCTGAGACCGGAGCACTAAAGACCTTCATCACCCAGCAGGGCATCAAGGGCCAGCATCAGACAAAGGAAGAGCAGTCTCAGATCACTAGTCAGGTGACTGGGCAGATTGGTTGGCGTCGCGAAGGCATCAAGTATCGACGCAATGAGCTCTTCTTAGATGTGCTGGAGAGTGTCAACCTGCTTATGTCACCTCAAGGTCAGGTCCTGAGTGCCCACGTGTCCGGCCGTGTGGTAATGAAGAGCTATCTCAGTGGAATGCCGGAGTGCAAATTTGGCATGAATGACAAAATTGTCATTGATAAGGCGGGTAAAGGCGGTGTCACTGATGAGGTGGGAAAGAGTGATttagggggaggaggaagTACCAGTGGTAAGCAGTCCATAGCCATCGACGACTGTACGTTCAACCAGTGTGTGCGTCTCAGTAAGTTTGACTCGGAGCGCAGCATCAGCTTCATCCCCCCGGATGGAGAGTATGAGCTCATGAGGTACCGTACCACTAAAGACATCATCCTACCTTTCCGAGTCATTCCACTGGTCAGGGAGGTGGGCCGCACCAAACTGGAGGTCAAAGTGGTCATCAAGTCCAACTTCAAACCCTCGCTCCTGGCTCAGAAAATTGAGGTGCGCATTCCCACACCGCTCAACACAAGCGGTGTCCAGGTGATCTGCATGAAAGGCAAGGCCAAGTACAAGGCCAGCGAGAACGCCATCGTATGGAAGATCAAGCGCATGGCTGGGATGAAGGAATCTCAGATCAGTGCTGAAATCGAGCTGCTGCCCACCAACGATAAGAAGAAGTGGGCCCGTCCTCCCATCTCCATGAACTTTGAGGTTCCATTTGCCCCCTCTGGGCTGAAGGTGCGTTACTTGAAGGTGTTTGAGTCCAAGCTGAACTACAGTGATCATGATGTTGTCAAATGGGTGCGCTACATTGGCCGAAGCGGCATCTACGAGACTCGATGTTAGAGCGCGAGCTGAGGCATACCTAACATACTCCCTCCACACTTTACATATTTTCTtatgtccctctctcttcactccatctctcttccctttaTTCTGCAATGTTAGGGATGAATTTAAATAACGTACAGATACTGTATATGCAAAATGTGAACCATAGTATGGCATCTCTTACTAtggttaaaggtagactcagcgatatgatgtagaaagtaaacagcatagtgggtcgtTTTCTGCAgcaactaagagcgttgaagctCAACTTCTCTACTATTTTGGTGCCCTGAACTGAGAGCTAAGTGTTGCATCttgctcatttcaatagccagtGCTGCTCATGGCAACATCATTTCGATGAGTCTACCTTCAACTTGCAAACAAGCTGCCCCTGTATAGAAGGAATACAAATAACGTGAAAACTGGTGGGGTTGAAGGGTCCATAATGTGGAGGAAAGTCCAGGTTAAGTGTTACTGTCCAGTCTGCAGTTTTTATTATAGGGTCAAGGTCTTTGAAGCGTCCACTTGTTATCCACCGTTTTTCTAAATGGCCTTTTGAGTCCAACATCCTCTCTTACCTGTGACATGCATCTAGTGAGCTTATTGATAATTGGCTGTTTGTAAATGGTAGTTTGTTTCTTTGGGTGGAATACAACCTGAGCACTACAGTGGCTTGGCGCTGACCTGCCTTTTCAGAGCCCGTGATGAGGTCGCCCCACCCCCCGGTGGTCACATTGCCTTGTTTGTAAAACCTGGTGACTGTCCAGTAAAATCCCATCATGTAACCAGC

Function

symbol description
ap2m1 Enables signal sequence binding activity and transmembrane transporter binding activity. Involved in several processes, including negative regulation of protein localization to plasma membrane; receptor-mediated endocytosis; and regulation of vesicle size. Located in clathrin-coated pit. Part of AP-2 adaptor complex. Implicated in autosomal dominant non-syndromic intellectual disability.

NR:

description
PREDICTED: AP-2 complex subunit mu-1 isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K11826 AP2M1; AP-2 complex subunit mu-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589764.2 False 2370 mRNA 0.49 12 29283916 29293424
XM_021589762.2 True 2392 mRNA 0.49 13 29283916 29293425

Neighbor

gene id symbol gene type direction distance location
LOC110508879 LOC106599070 coding downstream 14393 29264829 ~ 29269523 (-)
LOC110508877 NA coding downstream 44716 29228842 ~ 29239200 (-)
LOC110508874 LOC106599072 coding downstream 63406 29203564 ~ 29220510 (-)
LOC110508876 NA coding downstream 80878 29200588 ~ 29203038 (-)
LOC110508873 LOC106599192 coding downstream 84735 29194598 ~ 29199181 (-)
LOC110508883 LOC106599063 coding upstream 7225 29300650 ~ 29315173 (-)
LOC110508885 LOC106599059 coding upstream 27312 29320737 ~ 29330605 (-)
copb2 LOC106599054 coding upstream 37676 29331101 ~ 29346369 (-)
LOC110508887 LOC106599048 coding upstream 62226 29355651 ~ 29360875 (-)
LOC118944841 LOC106568934 coding upstream 78391 29370881 ~ 29378439 (-)
G2125875 NA non-coding downstream 9436 29176653 ~ 29274480 (-)
G2125903 NA non-coding downstream 71478 29211946 ~ 29212438 (-)
G2125860 NA non-coding downstream 124903 29155229 ~ 29159013 (-)
G2125817 NA non-coding downstream 202370 29080571 ~ 29081546 (-)
G2125815 NA non-coding downstream 203658 29079529 ~ 29080258 (-)
G2125888 NA non-coding upstream 4381 29297806 ~ 29298278 (-)
G2125887 NA non-coding upstream 5094 29298519 ~ 29299176 (-)
G2125937 NA non-coding upstream 22729 29316154 ~ 29316379 (-)
G2125943 NA non-coding upstream 56596 29350021 ~ 29350402 (-)
LOC118944842 NA other downstream 160174 29118684 ~ 29123806 (-)
G2125813 NA other downstream 205172 29078039 ~ 29078744 (-)
G2125723 NA other downstream 398062 28885468 ~ 28885854 (-)
G2125290 NA other downstream 591446 28692139 ~ 28692470 (-)
G2125270 agla other downstream 620490 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1107788 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1141010 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1260164 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1411660 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1950666 31244091 ~ 31244692 (-)

Expression


Co-expression Network