LOC110508887 (LOC106599048)


Basic Information

Item Value
gene id LOC110508887
gene name LOC106599048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29355651 ~ 29360875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589779.2
CAAGTAAACAGCGATATCGTATCTCCTTTACCCTTTTTACTGGAAATAAGGACACTAGAAACACACAGACAATATGCCAGTTGATCTGAATGGGTATTGGAAAATGATCTCCAATGACAACTTTGAGGAGTACATGAAAGCCCTCGATGTAAATGTTGCCATTAGGAAAATTGCCAACTTGTTGAAGACTGACAAAGACATCAGTGTTGATGGTGATCACATGGTCATCAAGACCCTCAGTACCTTTAAGAACTACAACATGGATTTCCATGTTGGCAAGGAGTTTGAGGAGGATCTGTCAGGGGTTGATGACAGAAAATGCATGACAACTATCTCATGGGAGGGGGACAAGCTGGTGTGTGTtcagaagggagagaaggagggccGAGGCTGGACCCATTGGGTGGAGGGAGATAAGCTTTATTTGGAGCTGAGAGTTTGTGGAGTTGTGTGCAAGCAGGCTTTCCAGAAAACCTAAACCAGCACTGGAACAACAGAACGGCGCACCCGGCCTGAGAGGGCAAGACAGACATGAACATGACCCGAGCCTGTGACAGAGAACCCCTATTGTAATCATCTGTCTGCTCATCCATCCATTCTTCCTTATTTCCATCCATCCTTTTACATTTAATTCCATCAAGACTGTTACATTGCCCCACTCAAACTATCCACAACAGGGGAGATGTAACAAAAAGGAAAACAACTGTTCATCACTGTACTGTAACTCTGTGCTCAATTGATGAACatgttatatgtgtgtgtacgCATTTGCACTGCAGTAGGTGTGGTAGGCTTTGTGATTAGTGCCTCAGTCTCTGATGATGCACCGGACTGATAACTGGTGGTAAGCTTGACCACTACCGAGGAAGTTTACAGTGTAAAGTCAACTCATATTTGGGCCATGAGAGAAGCAGTGAAATGAATTCAAACACACAAACTTTGGATGCTACATTTTAGGATACATAAAGAAATGAAAAATCTGTATAGAAAAGAGTGAagtaaatagtacaaataaatgtaaGAAGATGCAGTGATCACGTAACCAGGAAAACTGGATATGAAAAAGACAAGTGGATTATTCGTTGGATTCATGAAATTGAATgtaaaaaaattaattaaaaaaatacacaGTTTGTCTCTTTGTGTCTAAAAAAATCCACTCTTACCTTTGATCATCCCGAGGGATTTTAAAAGTACCCTTTCCCAATCCCAGTGACAGATGGAcctctggagacagacagacatggagagagaagaaaaaaaggtAATCACTCATTTTGGCTAAACCAATCAAATCAATACATTTTAATCTATAAAGCCCAACAgttatcacaaagtgctttacgtGGTCTATTCCCACAAATTCTGGTTTACATAATCAATCATTCAATGAGCAGCCCATTAAGCAATCTATCAAACAGTTATCATCACTAGCCTTCTCATACCTTTTTACTTTGCTTAGTCAGCTGCactggcgattttagcatgtaaatcttggtggggcaaaaaaaaaagaaggtgggatgcatgccagcaaagccacta

Function

NR:

description
retinol-binding protein 1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589779.2 True 1545 mRNA 0.41 4 29355651 29360875

Neighbor

gene id symbol gene type direction distance location
copb2 LOC106599054 coding downstream 9282 29331101 ~ 29346369 (-)
LOC110508885 LOC106599059 coding downstream 25106 29320737 ~ 29330605 (-)
LOC110508883 LOC106599063 coding downstream 40478 29300650 ~ 29315173 (-)
LOC110508881 ap2m1 coding downstream 62226 29283916 ~ 29293425 (-)
LOC110508879 LOC106599070 coding downstream 86128 29264829 ~ 29269523 (-)
LOC118944841 LOC106568934 coding upstream 10941 29370881 ~ 29378439 (-)
nmnat3 nmnat3 coding upstream 23997 29384872 ~ 29393924 (-)
LOC110508890 LOC105021148 coding upstream 321730 29682605 ~ 29806734 (-)
slc25a36a LOC106568938 coding upstream 461006 29821881 ~ 29872184 (-)
LOC110508894 LOC106599038 coding upstream 515874 29876749 ~ 29883535 (-)
G2125943 NA non-coding downstream 5249 29350021 ~ 29350402 (-)
G2125937 NA non-coding downstream 39272 29316154 ~ 29316379 (-)
G2125887 NA non-coding downstream 56475 29298519 ~ 29299176 (-)
G2125888 NA non-coding downstream 57373 29297806 ~ 29298278 (-)
G2125948 NA non-coding upstream 22460 29383335 ~ 29383852 (-)
G2126651 NA non-coding upstream 63774 29424649 ~ 29427466 (-)
G2126654 NA non-coding upstream 70607 29431482 ~ 29432039 (-)
G2126690 NA non-coding upstream 119469 29480344 ~ 29480852 (-)
LOC118944842 NA other downstream 231909 29118684 ~ 29123806 (-)
G2125813 NA other downstream 276907 29078039 ~ 29078744 (-)
G2125723 NA other downstream 469797 28885468 ~ 28885854 (-)
G2125290 NA other downstream 663181 28692139 ~ 28692470 (-)
G2125270 agla other downstream 692225 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1040338 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1073560 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1192714 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1344210 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1883216 31244091 ~ 31244692 (-)

Expression


Co-expression Network