LOC118944841 (LOC106568934)


Basic Information

Item Value
gene id LOC118944841
gene name LOC106568934
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29370881 ~ 29378439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966410.1
CGTTGGGCTATAGATGAATGTAGCCTTCCTCCTGTGTtgatctattttctctctcttctttccttgGGGACCTATCACACAGATGTAAATGTTGCCATTAGGAAAATTGCCACTTTGTTGAAGCCCGACAAAGACATCAGTCATGATGGTGACCATGTTGTCATCAAGACCCTCAGTACCTTTAAGAACTACAACATGGATTTCTCTGTTGGCAAGGAGTTTGAGGAGGATCTGTCAGGGGTCGATGACAGAAAATGCATGACAACTATCTCATGGGAGGGGGACAAGCTGTTGTGTGTTcagaagggagagaaggatggcCGAGGCTGGACCCATTGGGTGGAGGGAGATGCGCTTCATCTGGGGCTGAGAGCATGTGGAGCTATGTGCAAACAGCTCTTCAAGAACACTTAAACCAGCCCTGGAACAACAGAACGGTAGCCCTTACCTGAGAGTGCAGAGAGACACGGACACAACCCCCAACCTGAGAGTGAAGAGAGACACGGACAAGACCCAAGCCTGTGACAGAGAACCACCTATTGCACACATCCGTCCATCAATCCATCCTTTCATCCATCCTTCCTTATTTCATTCCATTCTTTCACATTTCATTCCATCAAGACTGTGGCCTTGACCCACCAAAGTCAAACTATCCACAACAAGGGTGATGTACATGTAGCTTCCTAACAAAAAGGAAAACTGTTTATTattaacctccaaacgagcttcaatgccatgcaacactccttccgtggtctccaactgctcttaaacgcaagtaaaaccaaatgcatgcttttcaaccgttcgctgcccacaccctaccgcccaactagc
>TU2430719
CAAGCTGTTGTGTGTTcagaagggagagaaggatggcCGAGGCTGGACCCATTGGGTGGAGGGAGATGCGCTTCATCTGGGGCTGAGAGCATGTGGAGCTATGTGCAAACAGCTCTTCAAGAACACTTAAACCAGCCCTGGAACAACAGAACGGTAGCCCTTACCTGAGAGTGCAGAGAGACACGGACACAACCCCCAACCTGAGAGTGAAGAGAGACACGGACAAGACCCAAGCCTGTGACAGAGAACCACCTATTGCACACATCCGTCCATCAATCCATCCTTTCATCCATCCTTCCTTATTTCATTCCATTCTTTCACATTTCATTCCATCAAGACTGTGGCCTTGACCCACCAAAGTCAAACTATCCACAACAAGGGTGATGTACATGTAGCTTCCTAACAAAAAGGAAAACTGTTTATTattaacctccaaacgagcttcaatgccatgcaacactccttccgtggtctccaactgctcttaaacgcaagtaaaaccaaatgcatgcttttcaaccgttcgctgcccacaccctaccgcccaactagcatcactactatggACAGTTCTAACTTAgaatgtggacaattacaaatacctaggtgtctggctaggtagactgtaaactctccttccagactcatattaaacatctccagtCCAAAgtaaaatctagaatcggcttcctatttcgcaacaaagcctccttcactcacgccgccaaacataccctcataaaactgactatcctaccgatcctcgacttcggcaatgtcatttacaaaatagcttccaatactctactcagcaaactggatgcagtctatcacagtgccatccgttttgtcaccaaagccccatatactacccaccactgcgacctgtatgctctagtcggctggcccttgctacatattcgtcgccagacccactggctccaggtcatctaaaagttgatgctaggtaaagctctgccttatctcagctcactggtcacgataacaacacccacctgtagcacgcgctccagcaggtatatttcactggccatccccaaagccaacatgtcctttggccgcctttccttccagttctctgctgccaatgactggaacgaattgcaaaaatcgctgaagctggagacttatatttccctcactaactttaaacatcagctatctgagcagctaaccaatctttgcagctgtacatagcccatctgtaaatagcccacccaatctacctacctcatccccatattgtttttatttacttttctgcttttgcacaccagtatttctacttgcacatcatcatctgctcatctatcactccagtgttaatttgctaaattgtaactactttgctactatggcctatttattgcctacctcctcacgccatttgcacacactgtatatagactttctttttttctattgtgttattgactgtatgcttgtttattccatgtgtaactctgt

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966410.1 False 837 mRNA 0.47 3 29371816 29378439
TU2430719 True 1488 lncRNA 0.45 2 29370881 29373120

Neighbor

gene id symbol gene type direction distance location
LOC110508887 LOC106599048 coding downstream 10941 29355651 ~ 29360875 (-)
copb2 LOC106599054 coding downstream 25447 29331101 ~ 29346369 (-)
LOC110508885 LOC106599059 coding downstream 41271 29320737 ~ 29330605 (-)
LOC110508883 LOC106599063 coding downstream 56643 29300650 ~ 29315173 (-)
LOC110508881 ap2m1 coding downstream 78391 29283916 ~ 29293425 (-)
nmnat3 nmnat3 coding upstream 6433 29384872 ~ 29393924 (-)
LOC110508890 LOC105021148 coding upstream 304166 29682605 ~ 29806734 (-)
slc25a36a LOC106568938 coding upstream 443442 29821881 ~ 29872184 (-)
LOC110508894 LOC106599038 coding upstream 498310 29876749 ~ 29883535 (-)
LOC110508897 LOC106599029 coding upstream 550563 29929002 ~ 29960541 (-)
G2125943 NA non-coding downstream 21414 29350021 ~ 29350402 (-)
G2125937 NA non-coding downstream 55437 29316154 ~ 29316379 (-)
G2125887 NA non-coding downstream 72640 29298519 ~ 29299176 (-)
G2125888 NA non-coding downstream 73538 29297806 ~ 29298278 (-)
G2125948 NA non-coding upstream 4896 29383335 ~ 29383852 (-)
G2126651 NA non-coding upstream 46210 29424649 ~ 29427466 (-)
G2126654 NA non-coding upstream 53043 29431482 ~ 29432039 (-)
G2126690 NA non-coding upstream 101905 29480344 ~ 29480852 (-)
G2126744 NA non-coding upstream 183140 29561579 ~ 29591924 (-)
LOC118944842 NA other downstream 248074 29118684 ~ 29123806 (-)
G2125813 NA other downstream 293072 29078039 ~ 29078744 (-)
G2125723 NA other downstream 485962 28885468 ~ 28885854 (-)
G2125290 NA other downstream 679346 28692139 ~ 28692470 (-)
G2125270 agla other downstream 708390 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1022774 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1055996 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1175150 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1326646 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1865652 31244091 ~ 31244692 (-)

Expression


Co-expression Network