LOC110508889 (LOC106599045)


Basic Information

Item Value
gene id LOC110508889
gene name LOC106599045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29410322 ~ 29661754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966206.1
CAGCCACGCCAAACCATCGCTCCACCTAGTAGACTGTTGACTGGCACAGCACGCTTTCTGTCTCTCGCAGTCAGCTTCAGTTCCCCGCTTACTTCGCATTGAGAAGGTGTGTCGAACAGACGTTGAAAGAAAGTAAGGTAATAtcaagtgtgtgagagagagagatcgactTGTGTTGGTCGAATTCGTTCTCCCATCATGGAGATGCTTGGAGTGCCATTTGCGCTGGTTTGGGTGGTTCTGGGGCTGTCCTGCATTCTCGCTGGAAAAGTGAACAAGCACAAGCCGTGGATCGAGACGTCGTACCATGGGGTGATCACAGAGAACATGGACACCGTTCTGCTGGACCCTCCCTTGGTGGCCCTGGATAAGGATGCCCCTGTCCCCTACGCAGGGGAGATCTGTGCATTTAAGATCCACGGGCAGGAGGCCCCGTTCGAGGCGGTGGTCCTGAACAGGACATCAGGGGAGGGGGTCCTGAGGGCCAAGGGCCCAGTGGACTGTGAGACCCAGAAGGAGTACACCTTCATCATCCAGGCTTACGACTGTGGGGCGGAGGCCAGTGGAGCCAGCTGGAAGAAGTCACATAAggcagTGGTTCACATCCAGGTGGATGACGTAAATGAGTTCTCTCCTGTGTTCCGGGAGCCTATGTACCACGCATCAGCAATGGAAGGGAAGATCTATGACAGCATCCTGCAGGTAGAGGCCTGGGACCAGGACTGTTCCCCGCAGTACAGCCAGATCTGCAACTATGACATCGTCACCTCCAACACGCCCTTTGCCATCGACCGCAACGGCAACATCAGAAACACGGAGCGTCTGAGCTACGACAAGAAGCAGCGCTACAAGGTCATGGTGACCGCCTTCGACTGCGGCCAGAAGAGGGCGACGGAGAGTGTGGCGGTGCACATCGACGTCAAGCCTGTCTGCAAACCTGGCTGGCAAGGCTGGAACAAGCAAGTGGACTACGAGCCCGGGACAGGAAGTAAGCAGCTGTTTCCCAAGATGCACCTGGAGACATGTGACGGCCCGCTGTCGGCGGTGAGAGCCATGGTGGAGCTGCAGACCAGCCACATTGGGAAGGGCTGCGACCGAGAGACCTACTCCGAGAAGTCCATGCAGAAACTCTGTGGTGCGGCGTCCGGCAGCACAGACCTCCTCCCCGCTCCCAGCATCTCCACCAATTGGACGGCTTCACTGCTGACGGACAGCGGGCGGGACAGTGACCTCATCTTCAACTTCGACGGGCGTCAGGCGGCCAACGTGCCAGAGCAGGTGGTTCCACAGAACTTGACTGACCAGTTCACCATCGCCACGTGGATGAAACACGGGCCCAGCCCCGGTCTGAGGGCCGAGAAAGAGACCCTGCTCTGCAACTCCGACAAGACCGAGATGAACAGGCACCACTACTCCCTGTACGTCCACAACTGCCGTCTGGTCTTCCTACTCAGGAGAGACTTCACCCAGGTTGACACCTTCCGCCCTGCAGAGTTCCACTGGAAACTGGAGCAGATCTGTGATAAGGAGTGGCACTACTACGTGATCAACGTGGAGTTTCCTGCCGTGACGCTCTTTGTGGATGGCGTGACCTACGAACCCTACCTGGTGACAGACGATTGGCCCATCCATCCCTCGTCAATCGACACCCAGCTGACAGTGGGTGCCTGCTGGCAAGgTGGTGAGGTGTCCACCCCACGGTTCACCCAGTTCTTCCGGGGCAGTCTGTCTGGGCTGACCATCCGGCCAGGGAGGATCGAGACCCAGAAAGTAATCTCCTGTCTACAGGCCTGTAAGGAAGGACTGGATATCCACTCACTGGAGAGCCTGGGCAAGGACATCAAGTTCCACTTCAACCCAGCCCAGTCGGTGctggtgatggagggagaggacctGGAGAGTGTCAACACAGCCATGGCCAAGGTCTCCTACATCAACTCACGCCAGTTCCCCACAGCAGGCCTCAGACAGCTACACATCACCACCACCGTACAGTGTTTCGGGGAGGACATATGCATCTCCATCCCAGACATTAAGGCTTTAGTAATGGTCCTGCCACCCAGCGAGCCACGGATCACCATCGCTGGTTCAGATCAACTCGTCAGGCCTGCCGCCGACCTGCGTGGAGCCATGGGCGTGGCACCCTTCAAGGAGCTGCGCATCACCAGCACTGTAACCAAGGGTGACGGTGTGCCATTCAGCGCAGtctACAGGCCTGGTGTTCTGGAGGCGATGCACAACCTGGATTACTGTGATGTCCTGGTGATCGGAGAGGAGCTCAACCCGGAGCAAGAGAGTCTGGAGATTCACCACAGCTCTCTAATGGGGAAACACCTGGACGCCACGAACTCCACCTCAGGAATATCCATATATGGTGTGGACTCCATGGCCCATTATGAGGAGGCCCTCAGGCAGGTGCGCTACAGGAACTGGCGCCCGGCGACCCTGAGTAACAGGAGGTTCAGGCTCACCTGCTCTGAGCTCAATGGACGCTACACCAGTAATGAGTTTAACTTGGAGGTTAGCCTCGTTCACAACGCAGCACCCGTAGAGCATGTCAATCACATGGCTGTCCAATCCCAGTACATGCGGTCAGTGCATCATCCACTGATGGTGCACTCTGTCAATTCCCACATCTCAGGCACCCCTCCAGCTGCCACAGTCGTGGTAGTGATCTGTATCGCCGCCCTGGTGTGTATAGTGGTGCTAGGCATCTACAGGCTCCACAGTACCCACCAGGACAGCTCCAAGAGTGAGGAGGATGAAGCCAAGGACCCAGAGATGGACTGGGACGACTCCACCCTCACCATCACAGTCAACCCTATGGAGAACGTCAGAGAGCCTCAGAcggtggaggaggaggtaaatgaggaagaggaagatgaacAGGCAGGCGACATCACGAGTGCAGAGTCTGATGACAGTGAtgaaacagaggaagaggaggacgacgaGAAGGAAGTGAAGGAGAGCAAGCTGAAGAGCAAGCTGGAATGGGATAGCTCTTCGATAACATATTAATCTTTCACGCATGCggacatgcacatacacacacacacacttacatataCAGAATTTGCTGagtcagtcaatcagttgtgAAAACAGCTACCCATCAAGTTTGCCACTGTCCAATGTTTTATGTCCAATGTCGCTCTCTTCTGGTCAAAATAAGGCATTACACACAAAAGGTTTCATTGTTTTCTGACTAACCAGTGGAGCTTATTTTCTCATATTTTGGTGTAACTACTTGTTCCTATTTAAAACCATCATTGACAACACAATAGGTAGGGCCAATTGAAAATTCAGTTGCATAAGCACATTTCCACCTTATATCCAATGGCTCGTTCATCTGTGTTTCATTATTTCTGGGTTTGGACACGAAACATTGGACAGCACATTTTCCTCTTATCTTCCTCAATTGCTGTTGAGTTACTAATACAAAAAGATCGTTGAATGCATTCATTGTAAATACCTTCTTTTGCATTAATACAAAATTATGCATTTCTTTGGATTTTGAGATTGTATTTCATTCATTTGAAATCTTGGAAATATATTTGAGGTCTTCTGAAAAACGGACTTACAAATTATCATTAgcatatttaatttatttaaggTATTTTAAGAGCCAATGTATTTACAAAACTAATTTTGAACATTTTTGATAGTCTCATTTTTCTTTGTCTGCCTGGTTCATGTTCTTGGACATATGAAACCAAGAGAAGTTCCTGTATGTTTTTATAAATCCCTCGTGAATATAGCAAGTAGTGTAGCTGAACTATCATTCACCTTGGGCCTGGTTCAATCCGTGGCGTTGAAGACCTGCGCTTCAACACGCAACATATGTAAAGGCAATGTTCGCAGAGTTTGCATTCAACGCTGCATAGGATGGCTCAATTACCTTTACCAATCGCACTATAGCGCAGATCTTCAGCGCtacggattgaatcgagccccTTGTCTCCCACCTACCTCTCCTCAAACTGTATGTTTAAACTTGCTTGCATCAGAGGCAGGGCATTTTGAGTAGTTGAGTTTctcctaaccacagatctaggatcagcttaccctcctTCACCTAACTTTAACCGTTAGAAaggaaaatgcaaaactgaccttagatcagcacTCATGGTCATGCCTCTATCTGTATTTGCCGTTGACTTGTGTCCATCTACTTCTTAGGCTGAGATGAGGGCCTGAGAATAGACACTTAACAGGATAGTTAACCCCATAATAAAGTTTGTCCGTTGTTTTTATACATCAAAAGTGGTATAAAGTCCATAAGTTGTGTAAATGTTTCATGCCATGTGTTGTTTAAAACAAGGAGTATGGGTCTGACAGATCATTTtggggtgaactatccctttagtcaccacctgggggcaacaTCATACAAAATCCCTATTCTCGGTTTGACAGGTTGGCATTTTTAGCCTGGGCAGAGACAATTTATCACATTCTCTTTGGCTGtctttacacaggcagcccatttTTGGGGAcacaaccaaattcacatagaaatatgagtTATGGAGCTGTcattcattgaaagcaagtctaagaagtggtagttCAGTTCTATGTGCActttttctatgcttcccgttcttaagttttgtttttgcatcttttgcttgtggttttgtacaccagcttcaaacagctgaaaatacgatatgtttggttatggaaaatacatttcaaagcggtttagatggtaaaaTGATTCTCTTCACAATGAAATTAGGCACATTTTAGAAACCAGGAAATGGAGCAATTTCTGCACATGGCACCTTTCAACACTTGTGGAATTTCTGTGTTAAATCATTGTATATATATtgattggtattttgaccaatcagatcagctctgaaaaatatctgatatGAAAAGATATGATTGGTCAAatgaccaattagtggaaaaccCCAAAATGGGCTGCCTGGGTGCATCTCAAAGGGCTGAATTGTCTTCTTcaccttgtctcctttccttcacatGTCCATCGAAAACACCGGTAAGGTGAAAGCAAACTGATGGGTTCCATTGCCTACCCAAATTTTGCTTTCACCAGCTCACTTCATGTCCATACAGAttaaggaaaggagacaaagagAGGAATCCACTTCTGACTATTGAGATACCCtctcatgttgttgttgttctatgATAAACCACCTCTGTCAGGAGTGCCACTGTAAGAAACCAGAAACTATTGATCCTCTCATTCTCTGGTGGCCTGTAACAGGGCTGCTGTAGCTGAATCTAGCCAACTCCTTTCTGACCCCTTGATTTTCCCAGAATGCCACTCTAAACTCTGCATCCGTTACATGTTTATGTCTGTAGCAGTGGTTAGAACTCTTCCCCGTCGGCCTTAATGCCTGTGGTTGTGATGTCATCATCGTGAGACGAGCCTTTCCCATTGCCTTGTTTCACCCCATCTTTACACCAAATGTGTCATAGAGGAGTAAAAATAAACTTTTGCATATAAACTGTGTCAAAACAGTTAAAGACAgttattttatatatatgtttcatttatttttgtttttgtaaagtttttttcttcttctctttggTGGTCACAGCAGCACTTTCTGTACATTGACCAATAAAGACTTGTTTTAGAATCTA

Function

NR:

description
calsyntenin-2-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22660 CLSTN2; calsyntenin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966206.1 True 5637 mRNA 0.48 17 29410322 29661754

Neighbor

gene id symbol gene type direction distance location
LOC110508882 LOC106599064 coding upstream 127168 29276406 ~ 29283154 (+)
LOC110508880 NA coding upstream 135868 29270737 ~ 29274454 (+)
LOC110508878 LOC106599189 coding upstream 154366 29246463 ~ 29255956 (+)
LOC118944852 NA coding upstream 177609 29228845 ~ 29233301 (+)
LOC110508872 LOC106599074 coding upstream 231425 29176760 ~ 29178897 (+)
LOC110508893 marh2 coding downstream 211735 29873489 ~ 29877319 (+)
LOC110508895 LOC106599036 coding downstream 226249 29888003 ~ 29893380 (+)
LOC110508896 NA coding downstream 242586 29904340 ~ 29906026 (+)
LOC118944851 NA coding downstream 253076 29914830 ~ 29921206 (+)
LOC110508899 LOC100136537 coding downstream 262472 29924226 ~ 29927553 (+)
G2125980 NA non-coding upstream 1562 29408555 ~ 29408760 (+)
G2125974 NA non-coding upstream 8401 29401714 ~ 29401921 (+)
G2125971 NA non-coding upstream 9685 29400339 ~ 29400637 (+)
G2125652 NA non-coding upstream 26476 29383620 ~ 29383846 (+)
G2125651 NA non-coding upstream 28686 29381002 ~ 29381636 (+)
G2126189 NA non-coding downstream 43334 29705088 ~ 29709362 (+)
G2126190 NA non-coding downstream 50316 29712070 ~ 29716882 (+)
G2126237 NA non-coding downstream 113860 29775614 ~ 29797906 (+)
G2126264 NA non-coding downstream 147354 29809108 ~ 29809317 (+)
G2126266 NA non-coding downstream 155882 29817636 ~ 29822158 (+)
G2125614 LOC106599059 other upstream 86938 29320743 ~ 29323384 (+)
LOC110508851 LOC106599130 other upstream 871910 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 1686334 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2301040 27106034 ~ 27109282 (+)
G2126497 NA other downstream 548493 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 873097 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 978933 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1978548 31594783 ~ 31643462 (+)
G2128189 NA other downstream 2077558 31739312 ~ 31740070 (+)

Expression


Co-expression Network