LOC110508893 (marh2)


Basic Information

Item Value
gene id LOC110508893
gene name marh2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29873489 ~ 29877319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589787.2
TGACCATAACGATACAGTCACTGCACAGCTGAGAGAGATGCGAGCAAGTCAGCTGACTGTCATAAATCCGTGAATAATACACCGTTTCTGCAAGAAGACGGGGAGATGGTTACGAACGAATAAATTATCCAGCCAATGCAGCAGATACACGACTTGCCATCATATATTGTATTCCTCCCAAAGCATCGTGTTCTGTCTAAATGTTAATGTCATTCTCGTCTCTAGCTAGCCAAATAGCTAGCTAAGGCCAGGGGGAGCTGGTGTCGACGTCCAAACAGTTGCCCACAGCAGTGGGAGGAGAGGTGTGTCACCCACACCAGGGCGCCATGACTACACCAGGCTGCTGCCACCTGCCTGGCTCCCTGTGTGACTACTCAGGCAGCGCTGCCGACCTTCCCAAGGAGGTAGAGGAGCCAGATGCCGGCCAGGCCCAGTACGTCGCTAAGGTTACAGCCAAAGATGGCCGCCCACTCTCCACTGTTGTCAAGGCTATGGGCTCACAGAGTAATGAAGGCATGTGTCGGATCTGCCACGAGGGGGCCGGTGGTGAGATGCTGCTCTCCCCTTGCAGTTGCACAGGGACCCTGGGTAAGGTGCACAAGAGCTGCCTGGAGAAGTGGCTGTCCTCCTCCAACACCAGCTACTGTGAGCTCTGCCACACCGAGTTCACTGTCGAACGGCGACCCCAGCCCCTCACACAGTGGTTGCGGGACCCAGGCCCTCGCAGTGAGAAGCGCACGCTTCTGTGCGACATGGCCTGCTTCATGCTCATCACGCCACTGGCGGCCATATCTGGCTGGCTGTGTCTGAGGGGAGCCCAGGACCACCTGACTCTCTACAGCCGGCTGGAGGCTGTGGGCCTCATCGCCCTCACCATTGCTCTCTTTACCATCTACGTCCTCTGGACACtgGTATCGTTCCGCTATCACTGTCAGTTATACTCGGAGTGGAGGAGGACCAATCAGAAAGTGCGCCTGCTCATGCCTGAAATTAAAGGAGCGCACTCTACCCAACATTCCGTCCCAACCAAGTCGACCAAGAAAATGACTGACGAGACCATTGTATGAGCGCTGTGGTCTCACTTAAAGTGTAATATATCTTGAACTTCTGCACTTGTGGACCATTCTGGGGATTATTTCGCCATAATCTCTATTATTTGAAACACTTGAGCCCAGATATGAACTATAACCAGTGGTTTTGGGACGTGTTGGACTCGTGGAATGAAGTGTCACTGATGTCATCGCTGGATTATGAACACTGGCCTGGAAAATCAGGACACAAATGGAAGGACACAGTTAATGTAGCAGGATGTAACTGATGCAGCatgttaatacagtatatctgaaACATACTACCCCCCCCTTCACAATGTATTTAGCTGTTTTTGGAAAACTGGCATCCAATAGCCCTATGAATTTACTCTCTCAGAACAATGACCACGTGAACAACCAAGTCTAAATATGATGTTTTCTGTTGTTAACTCTTTGCCCTTTGgaagaagtgggagagagagagagaagaagggaacaAACTGCAATGTTTTGGAGTGGGCTTTGGAGTGTCAGTCAATGTATGCTAAATCATTTTATGTTGCACTCCCTTGAGTAAGCTGGGTCATTGTGCAATAAAACATAAGGGACTCTTGGTCTTTGCAGTCGGCACATCTGGAATGCATGTGTGCTGAATCTGAGTTACTGATACAGGAGTATTAGATCGGTAATGATCACTTGATGCAGTTGACTGCACCAAACATACCACCATCTAGTGGACATTTAAGGGACTACACTCCTTGCAAGTGGTCCAGAATGTAGGAGCATACAAGTAACATGAGAGATCCACTCAACTACTGTAATATTGTAAAATTTTATTTTATGGCATTAATATAATGTGAGTTGACAAGCTATCAAAAACAAAAGTATATTACACAAAATGAAGAATGTTTGCACCACAACATTGAGATGACAGAAAGGGGAAGGTAAGCGTCATCATGGGTTACAGGTTCTGACAGCACTGCAGTTTGTTCCCTTTCTGGTCCGTGGTGGGCGGAACACTTATGTCCACCACATTGTTTCCAGGGGACTCGTCATGGGCGGACCGCTCAGCGATCTGCTTCTGCGATACGATGCGATAGATTTCTGTGGagagtagactagactgttgTGGTGCATCTCAATACTTCAAAAGAGGATTTTCTAGTTTACTTCATCTTCACTATGTCAAAGCAATTGGCTTTCCAGACAGTCCTTTTGCTGTTATACTGTACCTGTAAGGATATTCTTGAAAGCTTCCTCTACATTTGTTGAATCTAAGGCTGAAGTTTCAATAAAGGATAGAGTGTTCTTCTCTGCCGGTTTAGAGAAAGGGGGAAAGTGAGTCACAATCATTATTAAACAGTTCCTGGGAGGGGAAAAAAAAACT

Function

NR:

description
E3 ubiquitin-protein ligase MARCH2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589787.2 True 2418 mRNA 0.48 5 29873489 29877319

Neighbor

gene id symbol gene type direction distance location
LOC110508889 LOC106599045 coding upstream 211735 29410322 ~ 29661754 (+)
LOC110508882 LOC106599064 coding upstream 590335 29276406 ~ 29283154 (+)
LOC110508880 NA coding upstream 599035 29270737 ~ 29274454 (+)
LOC110508878 LOC106599189 coding upstream 617533 29246463 ~ 29255956 (+)
LOC118944852 NA coding upstream 640776 29228845 ~ 29233301 (+)
LOC110508895 LOC106599036 coding downstream 10684 29888003 ~ 29893380 (+)
LOC110508896 NA coding downstream 27021 29904340 ~ 29906026 (+)
LOC118944851 NA coding downstream 37511 29914830 ~ 29921206 (+)
LOC110508899 LOC100136537 coding downstream 46907 29924226 ~ 29927553 (+)
LOC110508902 LOC106599020 coding downstream 111321 29988640 ~ 29991589 (+)
G2126288 NA non-coding upstream 7169 29866105 ~ 29866320 (+)
G2126287 NA non-coding upstream 8061 29865087 ~ 29865428 (+)
G2126269 NA non-coding upstream 37205 29834989 ~ 29836284 (+)
G2126266 NA non-coding upstream 51331 29817636 ~ 29822158 (+)
G2126264 NA non-coding upstream 64172 29809108 ~ 29809317 (+)
G2126297 NA non-coding downstream 8746 29886065 ~ 29886364 (+)
G2126300 NA non-coding downstream 22758 29900077 ~ 29900320 (+)
G2126339 NA non-coding downstream 77932 29955251 ~ 29956186 (+)
G2126322 NA non-coding downstream 100575 29977894 ~ 29979426 (+)
G2126323 LOC106599023 non-coding downstream 103713 29981032 ~ 29982292 (+)
G2125614 LOC106599059 other upstream 550105 29320743 ~ 29323384 (+)
LOC110508851 LOC106599130 other upstream 1335077 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2149501 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2764207 27106034 ~ 27109282 (+)
G2126497 NA other downstream 332928 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 657532 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 763368 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1762983 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1861993 31739312 ~ 31740070 (+)

Expression


Co-expression Network