LOC110508894 (LOC106599038)


Basic Information

Item Value
gene id LOC110508894
gene name LOC106599038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29876749 ~ 29883535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589789.2
GTATGGAAACAGGGACTCCTCCCCAGTGCAGAGTTCTGAGATCTCTCTTCCTGCGGTCAGCCTTGTTTGACAGACAACATTGGCGCATTGTTTCACACATTTATAAAGACAATTATCCCGTACATACCGATAATTCAGAGGCATACAATTTTGCACATTCTTTTCGGGAACAAGCGCTGGAGAGGCCTCGTCTAGAATGGGGAACAGAGACGATGAATACGATTTCTTGTTCAAAGTTGTGCTAATTGGGGACTCTGGTGTCGGGAAGAGTAACTTGCTCTCTCGGTTCACACGGAATGAGTTCAACCTTGAGAGTAAGAGCACCATCGGGGTGGAGTTTGCCACCCGCAGCATCCAGGTGGATGGGAAGACGATAAAGGCCCAGATATGGGACACGGCTGGACAGGAACGTTACAGAGCCATCACCTCCGCCTATTACAGAGGGGCAGTGGGTGCTCTCCTAGTGTATGACATCGCCAAGCACCTGACCTATGAAAACGTGGAGCGCTGGTTGAAGGAACTGAGGGATCATGCAGACAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACCTGCGCCACCTCAGGGCCGTGCCCATGGATGAGGCCCGGGCTTTTGCAGAGAAGAACACTCTATCCTTTATTGAAACTTCAGCCTTAGATTCAACAAATGTAGAGGAAGCTTTCAAGAATATCCTTACAGAAATCTATCGCATCGTATCGCAGAAGCAGATCGCTGAGCGGTCCGCCCATGACGAGTCCCCTGGAAACAATGTGGTGGACATAAGTGTTCCGCCCACCACGGACCAGAAAGGGAACAAACTGCAGTGCTGTCAGAACCTGTAACCCATGATGACGCTTACCTTCCCCTTTCTGTCATCTCAATGTTGTGGTGCAAACATTCTTCATTTTGTGTAATATACTTTTGTTTTTGATAGCTTGTCAACTCACATTATATTAATGCCATAAAATAAAATTTTACAATATTACA

Function

NR:

description
PREDICTED: ras-related protein Rab-11B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589789.2 True 995 mRNA 0.47 5 29876749 29883535

Neighbor

gene id symbol gene type direction distance location
slc25a36a LOC106568938 coding downstream 4565 29821881 ~ 29872184 (-)
LOC110508890 LOC105021148 coding downstream 70015 29682605 ~ 29806734 (-)
nmnat3 nmnat3 coding downstream 482825 29384872 ~ 29393924 (-)
LOC118944841 LOC106568934 coding downstream 498310 29370881 ~ 29378439 (-)
LOC110508887 LOC106599048 coding downstream 515874 29355651 ~ 29360875 (-)
LOC110508897 LOC106599029 coding upstream 45467 29929002 ~ 29960541 (-)
LOC110508900 LOC106599024 coding upstream 84030 29967565 ~ 29977338 (-)
LOC110508901 LOC106599023 coding upstream 97568 29981103 ~ 29984528 (-)
LOC110508903 LOC106599022 coding upstream 108058 29991593 ~ 29998944 (-)
LOC110508904 LOC106599012 coding upstream 115919 29999454 ~ 30032487 (-)
G2126918 NA non-coding downstream 40410 29835008 ~ 29836339 (-)
G2126846 NA non-coding downstream 175879 29700531 ~ 29700870 (-)
G2126817 NA non-coding downstream 215023 29658952 ~ 29661726 (-)
G2126784 NA non-coding downstream 249045 29624558 ~ 29627704 (-)
G2126935 NA non-coding upstream 16593 29900128 ~ 29900394 (-)
G2126937 NA non-coding upstream 19986 29903521 ~ 29903841 (-)
G2126894 NA non-coding upstream 94254 29977789 ~ 29979415 (-)
G2126961 NA non-coding upstream 102358 29985893 ~ 29986103 (-)
G2126963 LOC106572245 non-coding upstream 103801 29987336 ~ 29987603 (-)
LOC118944842 NA other downstream 753007 29118684 ~ 29123806 (-)
G2125813 NA other downstream 798005 29078039 ~ 29078744 (-)
G2125723 NA other downstream 990895 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1184279 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1213323 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 517678 30399711 ~ 30401807 (-)
G2127177 NA other upstream 550900 30434435 ~ 30434854 (-)
G2127455 NA other upstream 670054 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 821550 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1360556 31244091 ~ 31244692 (-)

Expression


Co-expression Network