LOC110508896


Basic Information

Item Value
gene id LOC110508896
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29904340 ~ 29906026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966619.1
CCCCCTTCCACTCCACACAAAGGCACCTTTTAGATGATGACCGATACCCAAACTGTTTTTCATGCCCAAATTCTGTTTTCTACCTTAAttcgaaaacaaaacaaaataatctTAACAGCAAATGACATTTTTCAGTGTAGGTCACATTTCTGACACTCAAACTCCAAGATGAGTGATGTGCCCTCCTGGCTGGACTATGAACACTATGAACTGTTGTCCCCGACCCCAGCAAGTTTCCCCAGGGGCCCCTCAGGCACGGGGCTGCTGCCCGTAGCAGGCCACGTGGAACAGGGTACGGCCCTGTGCTTCGTGGgcctcctgctgctcctcctgctcttcctgaTAGTGCGCTGCATCCGCATCCTGCTGGACCCCTACAACAGTATGACTGCCACCTCCTGGACCAACGACCCCAGGGACCCGTTGGAGAGGGGTCAGTTTGACTATGCCCTGGTGTAGGAGGGTTTGGGAGAAGAAGAGGGATGTGGAGAGTTTTGGGACCCTGAAGCAGGTTCAAGGGGGATGTTGTCCTAACCTTCGGACGGACCTTGATGAGACCAAAAAAAGTAgctacatatgtaggatcttaatttgatcaccctgttgcatgagaacttgtagtgtatttgaggtttaataATGTTTCTGAAGTTTGAcatttcccttacgaaaaatgtatcaacccctacaaaaatatgaattataatccacataataattcacattttctgttgctgcaggattattttcctgctgcagcaaactgggtcaaattaagatcctacatctgtagctagAGAAGGAGAACACGTGGATGGAATTTGCTGTCCCTGTCTCATTGAAAACAATTACATCCGGTTTGGTCCTGTCATCATGAGTAGCCTATTTGAATGCAGTATTAGATAGTCTgcttcataataataatataataataacttTATTTCCATAGCGCTTTTCAATACAGGTCACAAATAATACAATTAAATAAAAGTACTAACAAAGAAAGGAGGAAGGAGAATGACTTAAGACAGCTCATTAAAATCATACATTGTAATCCTACATTAAAAACATCTTTATGAACGCGTATCTTCAGCAGTCATTTTATCAGCAAGCACTGAATCTGCAAGCCTGCACTCCTCTGGCAGACCATTCCAAGGTCTAGGGGCTCGCTGGCTCAGATGGTTTGGGAAGAAGAAGTGGACTTTCGTGAAGCAGCTTGTGGGAAGGACTGAGTCTCAAATCAATGCAATCCGATTTCCAATATAGGCGACAACAGTGACTAGGGTCTGGTAGATGTGACCCTAGGTGACAACAGTAACTAGGTTCTGGTAGATGTGACCCTAGGTGACAACAGTAACTAGGGTCTGGTAGATATGACCCTAGGTGACAACAGTGACTAGGGTCTGGTAGATATGACCCTAGGTGACAACAGTAACTAGGGTCTGGTAGATATGACCCTAGGCGACAACAGTAACTAGGTTCTGGTAGATATGACTCTCTTTGTAACTTTGATAAGGGATGGGTCATCTTCAGACAGACaactctcccaacaaatcacGAGGCAGACGTGCCAAAAGTCGCGACTCAAAACCAAAGTTTGCAGGCAAAACCTTTGCAGTGGTTTTTAAAGAGTGTGATCTGCACTCTTTCAAAGTAACCTTTGATCTCCATCTTGATAGCTACTTAT

Function

NR:

description
cortexin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966619.1 True 1687 mRNA 0.44 1 29904340 29906026

Neighbor

gene id symbol gene type direction distance location
LOC110508895 LOC106599036 coding upstream 10960 29888003 ~ 29893380 (+)
LOC110508893 marh2 coding upstream 27021 29873489 ~ 29877319 (+)
LOC110508889 LOC106599045 coding upstream 242586 29410322 ~ 29661754 (+)
LOC110508882 LOC106599064 coding upstream 621186 29276406 ~ 29283154 (+)
LOC110508880 NA coding upstream 629886 29270737 ~ 29274454 (+)
LOC118944851 NA coding downstream 8804 29914830 ~ 29921206 (+)
LOC110508899 LOC100136537 coding downstream 18200 29924226 ~ 29927553 (+)
LOC110508902 LOC106599020 coding downstream 82614 29988640 ~ 29991589 (+)
LOC110508214 LOC106569003 coding downstream 358124 30264150 ~ 30265990 (+)
LOC110508911 LOC106598992 coding downstream 377894 30283920 ~ 30336939 (+)
G2126300 NA non-coding upstream 4020 29900077 ~ 29900320 (+)
G2126297 NA non-coding upstream 17976 29886065 ~ 29886364 (+)
G2126288 NA non-coding upstream 38020 29866105 ~ 29866320 (+)
G2126287 NA non-coding upstream 38912 29865087 ~ 29865428 (+)
G2126269 NA non-coding upstream 68056 29834989 ~ 29836284 (+)
G2126339 NA non-coding downstream 49225 29955251 ~ 29956186 (+)
G2126322 NA non-coding downstream 71868 29977894 ~ 29979426 (+)
G2126323 LOC106599023 non-coding downstream 75006 29981032 ~ 29982292 (+)
G2126320 NA non-coding downstream 78733 29984759 ~ 29985703 (+)
G2126318 NA non-coding downstream 79850 29985876 ~ 29986384 (+)
G2125614 LOC106599059 other upstream 580956 29320743 ~ 29323384 (+)
LOC110508851 LOC106599130 other upstream 1365928 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2180352 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2795058 27106034 ~ 27109282 (+)
G2126497 NA other downstream 304221 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 628825 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 734661 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1734276 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1833286 31739312 ~ 31740070 (+)

Expression


Co-expression Network